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avrg: GSE58827: Dynamics of the Mouse Liver

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Results for Nkx2-4

Z-value: 0.45

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Transcription factors associated with Nkx2-4

Gene Symbol Gene ID Gene Info
ENSMUSG00000054160.3 Nkx2-4

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Nkx2-4mm39_v1_chr2_-_146927365_146927406-0.029.3e-01Click!

Activity profile of Nkx2-4 motif

Sorted Z-values of Nkx2-4 motif

Network of associatons between targets according to the STRING database.

First level regulatory network of Nkx2-4

PNG image of the network

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Promoter Score Transcript Gene Gene Info
chr7_+_26821266 1.98 ENSMUST00000206552.2
cytochrome P450, family 2, subfamily f, polypeptide 2
chr6_+_41331039 1.01 ENSMUST00000072103.7
trypsin 10
chr19_-_39875192 0.90 ENSMUST00000168838.3
cytochrome P450, family 2, subfamily c, polypeptide 69
chr19_-_39801188 0.69 ENSMUST00000162507.2
ENSMUST00000160476.9
ENSMUST00000239028.2
cytochrome P450, family 2, subfamily c, polypeptide 40
chr19_-_39637489 0.60 ENSMUST00000067328.7
cytochrome P450, family 2, subfamily c, polypeptide 67
chr8_-_110305672 0.41 ENSMUST00000074898.8
haptoglobin
chr17_+_37253802 0.27 ENSMUST00000040498.12
ring finger protein 39
chr4_-_40279382 0.25 ENSMUST00000108108.3
ENSMUST00000095128.10
NADH:ubiquinone oxidoreductase subunit B6
chr5_+_32293145 0.23 ENSMUST00000031017.11
fos-like antigen 2
chr6_+_41098273 0.23 ENSMUST00000103270.4
T cell receptor beta, variable 13-2
chr3_-_10366229 0.21 ENSMUST00000119761.2
ENSMUST00000029043.13
fatty acid binding protein 12
chr7_-_44320244 0.21 ENSMUST00000048102.15
myosin, heavy polypeptide 14
chr15_+_88703786 0.20 ENSMUST00000024042.5
cysteine-rich with EGF-like domains 2
chr1_-_175319842 0.19 ENSMUST00000195324.6
ENSMUST00000192227.6
ENSMUST00000194555.6
regulator of G protein signaling 7
chr3_-_102843406 0.19 ENSMUST00000199930.2
ENSMUST00000029448.11
ENSMUST00000196988.5
synaptonemal complex protein 1
chr9_-_31824758 0.18 ENSMUST00000116615.5
BarH-like homeobox 2
chrX_+_100427331 0.18 ENSMUST00000119190.2
gap junction protein, beta 1
chr2_-_63014622 0.17 ENSMUST00000075052.10
ENSMUST00000112454.8
potassium voltage-gated channel, subfamily H (eag-related), member 7
chr2_-_157408239 0.17 ENSMUST00000109528.9
ENSMUST00000088494.3
bladder cancer associated protein
chr18_-_3281089 0.16 ENSMUST00000139537.2
ENSMUST00000124747.8
cAMP responsive element modulator
chr2_-_147028309 0.14 ENSMUST00000067075.7
NK2 homeobox 2
chr4_+_48663504 0.14 ENSMUST00000030033.5
caveolae associated 4
chr19_-_45731290 0.14 ENSMUST00000111927.8
fibroblast growth factor 8
chr4_+_99544536 0.14 ENSMUST00000087285.5
forkhead box D3
chr13_+_63387870 0.13 ENSMUST00000159152.3
ENSMUST00000221820.2
aminopeptidase O
chr19_-_39729431 0.13 ENSMUST00000099472.4
cytochrome P450, family 2, subfamily c, polypeptide 68
chr13_+_63387827 0.13 ENSMUST00000222929.2
aminopeptidase O
chrX_+_102674181 0.12 ENSMUST00000033692.9
zinc finger, CCHC domain containing 13
chr1_+_85177316 0.12 ENSMUST00000161424.5
ENSMUST00000113402.4
predicted pseudogene 7609
chr8_+_46081213 0.12 ENSMUST00000130850.8
sorbin and SH3 domain containing 2
chr5_+_14564932 0.11 ENSMUST00000182407.8
ENSMUST00000030691.17
piccolo (presynaptic cytomatrix protein)
chrX_+_106132840 0.11 ENSMUST00000118666.8
ENSMUST00000053375.4
purinergic receptor P2Y, G-protein coupled 10
chr8_-_40761372 0.11 ENSMUST00000118639.2
fibroblast growth factor 20
chr12_+_105651643 0.11 ENSMUST00000051934.7
GSK3B interacting protein
chr18_-_3281727 0.11 ENSMUST00000154705.8
ENSMUST00000151084.8
cAMP responsive element modulator
chr11_-_102470287 0.10 ENSMUST00000107081.8
predicted gene 11627
chrX_-_139857424 0.10 ENSMUST00000033805.15
ENSMUST00000112978.2
proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
chr3_-_92496293 0.10 ENSMUST00000098888.7
sperm mitochondria-associated cysteine-rich protein
chrX_-_142716085 0.10 ENSMUST00000087313.10
doublecortin
chr16_-_92622659 0.10 ENSMUST00000186296.2
runt related transcription factor 1
chr19_-_45731312 0.09 ENSMUST00000026241.12
ENSMUST00000026240.14
ENSMUST00000111928.8
fibroblast growth factor 8
chr11_-_83320281 0.09 ENSMUST00000052521.9
growth arrest-specific 2 like 2
chr2_+_61634797 0.09 ENSMUST00000048934.15
T-box brain transcription factor 1
chr1_+_85454323 0.09 ENSMUST00000239236.2
predicted gene 7592
chr2_-_35995283 0.09 ENSMUST00000112960.8
ENSMUST00000112967.12
ENSMUST00000112963.8
LIM homeobox protein 6
chr10_-_62258195 0.08 ENSMUST00000020277.9
hexokinase domain containing 1
chr6_+_121320339 0.08 ENSMUST00000168295.2
solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12
chr3_-_129548954 0.08 ENSMUST00000029653.7
epidermal growth factor
chr11_+_53611611 0.08 ENSMUST00000048605.3
interleukin 5
chr18_-_3281752 0.08 ENSMUST00000140332.8
ENSMUST00000147138.8
cAMP responsive element modulator
chrX_-_35755483 0.08 ENSMUST00000169499.2
predicted gene 14569
chr15_+_81350842 0.08 ENSMUST00000230062.2
ring-box 1
chr14_+_55909816 0.08 ENSMUST00000227178.2
ENSMUST00000227914.2
guanosine monophosphate reductase 2
chr17_+_37253916 0.08 ENSMUST00000173072.2
ring finger protein 39
chr14_+_26414422 0.08 ENSMUST00000022433.12
dynein, axonemal, heavy chain 12
chr14_+_55909692 0.08 ENSMUST00000002397.7
guanosine monophosphate reductase 2
chr18_+_37085673 0.07 ENSMUST00000192512.6
ENSMUST00000192295.2
ENSMUST00000115661.5
protocadherin alpha 4
predicted gene, 42416
chr10_+_60236532 0.07 ENSMUST00000218360.2
predicted gene, 17455
chrX_+_36572501 0.07 ENSMUST00000179915.4
reproductive homeobox 4A2
chr2_+_153716958 0.07 ENSMUST00000028983.3
BPI fold containing family B, member 2
chr11_+_110858882 0.07 ENSMUST00000125692.2
potassium inwardly-rectifying channel, subfamily J, member 16
chr1_+_16175998 0.07 ENSMUST00000027053.8
retinol dehydrogenase 10 (all-trans)
chr8_+_46944000 0.07 ENSMUST00000110372.9
ENSMUST00000130563.2
acyl-CoA synthetase long-chain family member 1
chr11_-_59029996 0.06 ENSMUST00000219084.3
obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
chr15_+_21111428 0.06 ENSMUST00000075132.8
cadherin 12
chr1_-_63153675 0.06 ENSMUST00000097718.9
INO80 complex subunit D
chr1_+_59669482 0.06 ENSMUST00000190490.2
predicted gene 973
chr11_-_53750016 0.06 ENSMUST00000117316.8
ENSMUST00000120776.8
ENSMUST00000121435.2
predicted gene 12216
chr14_+_53061814 0.06 ENSMUST00000103648.4
T cell receptor alpha variable 11D
chrX_+_111513971 0.06 ENSMUST00000071814.13
zinc finger protein 711
chr1_+_175526152 0.06 ENSMUST00000094288.10
ENSMUST00000171939.8
WD repeat domain 64
chr14_-_55909314 0.06 ENSMUST00000163750.8
neural precursor cell expressed, developmentally down-regulated gene 8
chr12_+_17740831 0.05 ENSMUST00000071858.5
hippocalcin-like 1
chr5_-_120887864 0.05 ENSMUST00000053909.13
ENSMUST00000081491.13
2'-5' oligoadenylate synthetase 2
chr13_+_83723255 0.05 ENSMUST00000199167.5
ENSMUST00000195904.5
myocyte enhancer factor 2C
chrX_+_36528991 0.05 ENSMUST00000115194.5
reproductive homeobox 4A
chr6_-_91784299 0.05 ENSMUST00000159684.8
glutamate receptor interacting protein 2
chrX_+_13527592 0.05 ENSMUST00000053659.2
G protein-coupled receptor 82
chr18_+_44096300 0.05 ENSMUST00000069245.8
serine peptidase inhibitor, Kazal type 5
chr6_-_28133324 0.05 ENSMUST00000131897.2
glutamate receptor, metabotropic 8
chr17_-_41225241 0.05 ENSMUST00000166343.3
glycine-N-acyltransferase-like 3
chr2_+_111084861 0.05 ENSMUST00000218065.2
olfactory receptor 1276
chr14_-_55909527 0.05 ENSMUST00000010520.10
neural precursor cell expressed, developmentally down-regulated gene 8
chr18_+_34675366 0.05 ENSMUST00000012426.3
wingless-type MMTV integration site family, member 8A
chr6_-_97037366 0.05 ENSMUST00000089295.6
TAFA chemokine like family member 4
chrX_+_36739065 0.05 ENSMUST00000089075.6
reproductive homeobox 4E
chr2_+_154390808 0.05 ENSMUST00000045116.11
ENSMUST00000109709.4
RIKEN cDNA 1700003F12 gene
chrX_-_72158969 0.05 ENSMUST00000114520.2
X-linked lymphocyte-regulated 5A
chr2_+_89842475 0.05 ENSMUST00000214382.2
ENSMUST00000217065.3
olfactory receptor 1263
chr2_-_36752671 0.05 ENSMUST00000213676.2
ENSMUST00000215137.2
olfactory receptor 351
chrX_+_72194740 0.05 ENSMUST00000097221.4
X-linked lymphocyte-regulated 5B
chr14_-_79461316 0.05 ENSMUST00000040802.5
zinc finger protein 957
chr7_+_54485336 0.04 ENSMUST00000082373.8
leucine zipper protein 2
chr17_+_70829144 0.04 ENSMUST00000140728.8
DLG associated protein 1
chr5_+_94796241 0.04 ENSMUST00000190001.7
predicted gene 6205
chr18_+_36431732 0.04 ENSMUST00000210490.3
IgA inducing protein
chr19_+_5497575 0.04 ENSMUST00000025850.7
ENSMUST00000236774.2
fos-like antigen 1
chr5_+_94487608 0.04 ENSMUST00000097477.7
expressed sequence AA792892
chr3_+_96604415 0.04 ENSMUST00000107077.4
protein inhibitor of activated STAT 3
chr6_-_28133128 0.04 ENSMUST00000132755.2
glutamate receptor, metabotropic 8
chr7_-_34512101 0.04 ENSMUST00000078686.8
ENSMUST00000205259.2
ENSMUST00000154629.3
carbohydrate sulfotransferase 8
chr2_+_131792931 0.04 ENSMUST00000110169.2
prion like protein doppel
chr6_-_91784405 0.04 ENSMUST00000162300.8
glutamate receptor interacting protein 2
chrX_-_72334121 0.04 ENSMUST00000088450.4
X-linked lymphocyte-regulated 5C
chr6_+_30568366 0.04 ENSMUST00000049251.6
carboxypeptidase A4
chr2_-_112089627 0.04 ENSMUST00000043970.2
NUT midline carcinoma, family member 1
chr14_+_53081922 0.04 ENSMUST00000181360.3
ENSMUST00000183652.2
T cell receptor alpha variable 12D-1
chr2_+_140012560 0.04 ENSMUST00000044825.5
NADH:ubiquinone oxidoreductase complex assembly factor 5
chr12_+_87649458 0.04 ENSMUST00000222112.2
ENSMUST00000095509.6
ENSMUST00000222332.2
oogenesin 1
chr2_-_85027041 0.04 ENSMUST00000099930.9
ENSMUST00000111601.2
leucine rich repeat containing 55
chr6_+_96090127 0.04 ENSMUST00000122120.8
TAFA chemokine like family member 1
chr11_+_68792364 0.04 ENSMUST00000073471.13
ENSMUST00000101014.9
ENSMUST00000128952.8
ENSMUST00000167436.3
ribosomal protein L26
chrX_-_142716200 0.04 ENSMUST00000112851.8
ENSMUST00000112856.3
ENSMUST00000033642.10
doublecortin
chr6_-_69394425 0.04 ENSMUST00000199160.2
immunoglobulin kappa chain variable 4-61
chr5_+_24890810 0.03 ENSMUST00000068825.8
negative regulator of ubiquitin-like proteins 1
chr8_+_46080840 0.03 ENSMUST00000135336.9
sorbin and SH3 domain containing 2
chr3_+_88536805 0.03 ENSMUST00000175745.2
rho/rac guanine nucleotide exchange factor (GEF) 2
chr12_+_87920850 0.03 ENSMUST00000180803.8
ENSMUST00000180707.8
ENSMUST00000181347.2
predicted gene 2042
chr8_-_33374825 0.03 ENSMUST00000238791.2
neuregulin 1
chr3_-_64317478 0.03 ENSMUST00000170280.3
vomeronasal 2, receptor 4
chr1_+_55170411 0.03 ENSMUST00000027122.14
MOB family member 4, phocein
chr17_+_70829050 0.03 ENSMUST00000133717.9
ENSMUST00000148486.8
DLG associated protein 1
chr7_+_103064279 0.03 ENSMUST00000106892.2
ubiquitin specific peptidase 17-like C
chr3_-_108108113 0.02 ENSMUST00000106655.2
ENSMUST00000065664.7
cytochrome b-561 domain containing 1
chr11_+_49213569 0.02 ENSMUST00000215671.2
olfactory receptor 1391
chr12_+_87921198 0.02 ENSMUST00000110145.12
ENSMUST00000181843.2
ENSMUST00000180706.8
ENSMUST00000181394.8
ENSMUST00000181326.8
ENSMUST00000181300.2
predicted gene 2042
chr8_-_3904309 0.02 ENSMUST00000033888.5
CD209e antigen
chr6_+_142359099 0.02 ENSMUST00000126521.9
ENSMUST00000211094.2
spexin hormone
chr14_+_53878403 0.02 ENSMUST00000184874.2
T cell receptor alpha variable 14-2
chr14_+_53853772 0.02 ENSMUST00000180972.3
T cell receptor alpha variable 12-2
chr10_-_33662700 0.02 ENSMUST00000223295.2
sulfotransferase family 3A, member 2
chr2_+_174485327 0.02 ENSMUST00000059452.6
zinc finger protein 831
chr7_-_108251113 0.02 ENSMUST00000213756.2
ENSMUST00000215075.2
ENSMUST00000214861.2
olfactory receptor 509
chr15_-_98796373 0.02 ENSMUST00000229775.2
ENSMUST00000023737.6
desert hedgehog
chr4_+_62443606 0.02 ENSMUST00000062145.2
RIKEN cDNA 4933430I17 gene
chr6_+_41107047 0.02 ENSMUST00000103271.2
T cell receptor beta, variable 13-3
chr2_+_88217406 0.02 ENSMUST00000214040.3
olfactory receptor 1178
chr6_+_29398919 0.01 ENSMUST00000181464.8
ENSMUST00000180829.8
coiled-coil domain containing 136
chr17_+_70828649 0.01 ENSMUST00000233283.2
DLG associated protein 1
chr6_-_122587005 0.01 ENSMUST00000032211.5
growth differentiation factor 3
chr19_-_8196196 0.01 ENSMUST00000113298.9
solute carrier family 22. member 29
chr13_+_83672965 0.01 ENSMUST00000199432.5
ENSMUST00000198069.5
ENSMUST00000197681.5
ENSMUST00000197722.5
ENSMUST00000197938.5
myocyte enhancer factor 2C
chr10_-_4338032 0.01 ENSMUST00000100078.10
zinc finger and BTB domain containing 2
chr12_+_38831093 0.01 ENSMUST00000161513.9
ets variant 1
chr11_-_101490011 0.01 ENSMUST00000209862.2
ENSMUST00000154147.2
predicted gene 11634
chr1_+_85577766 0.01 ENSMUST00000066427.11
nuclear antigen Sp100
chr12_+_38830812 0.01 ENSMUST00000160856.8
ets variant 1
chr3_+_153549846 0.01 ENSMUST00000044089.4
ankyrin repeat and SOCS box-containing 17
chr12_-_115083839 0.01 ENSMUST00000103521.3
immunoglobulin heavy variable 1-50
chr9_-_39618413 0.00 ENSMUST00000215192.2
olfactory receptor 149

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.0 GO:0090420 naphthalene metabolic process(GO:0018931) naphthalene-containing compound metabolic process(GO:0090420)
0.1 0.4 GO:2000295 regulation of hydrogen peroxide catabolic process(GO:2000295)
0.1 2.3 GO:0019373 epoxygenase P450 pathway(GO:0019373)
0.1 0.2 GO:0051878 lateral element assembly(GO:0051878)
0.1 0.2 GO:0046038 GMP catabolic process(GO:0046038)
0.0 0.1 GO:0021530 spinal cord oligodendrocyte cell differentiation(GO:0021529) spinal cord oligodendrocyte cell fate specification(GO:0021530)
0.0 0.2 GO:0060128 corticotropin hormone secreting cell differentiation(GO:0060128)
0.0 0.1 GO:0098928 presynaptic signal transduction(GO:0098928) presynapse to nucleus signaling pathway(GO:0099526)
0.0 0.1 GO:0070682 proteasome regulatory particle assembly(GO:0070682)
0.0 0.1 GO:0045645 regulation of eosinophil differentiation(GO:0045643) positive regulation of eosinophil differentiation(GO:0045645)
0.0 0.1 GO:2000872 positive regulation of progesterone secretion(GO:2000872)
0.0 0.1 GO:0009992 cellular water homeostasis(GO:0009992)
0.0 0.2 GO:0015868 purine ribonucleotide transport(GO:0015868)
0.0 0.2 GO:0042637 catagen(GO:0042637)
0.0 0.1 GO:0001661 conditioned taste aversion(GO:0001661)
0.0 0.1 GO:0021853 cerebral cortex GABAergic interneuron migration(GO:0021853) interneuron migration(GO:1904936)
0.0 0.1 GO:0007341 penetration of zona pellucida(GO:0007341)
0.0 0.1 GO:0002784 regulation of antimicrobial peptide production(GO:0002784) regulation of antibacterial peptide production(GO:0002786)
0.0 0.0 GO:0030961 peptidyl-arginine hydroxylation(GO:0030961)
0.0 0.1 GO:0090370 STAT protein import into nucleus(GO:0007262) negative regulation of cholesterol efflux(GO:0090370)
0.0 0.1 GO:0007196 adenylate cyclase-inhibiting G-protein coupled glutamate receptor signaling pathway(GO:0007196)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0031838 haptoglobin-hemoglobin complex(GO:0031838)
0.1 0.2 GO:1902560 GMP reductase complex(GO:1902560)
0.0 0.2 GO:0000802 transverse filament(GO:0000802)
0.0 0.1 GO:0044317 rod spherule(GO:0044317)
0.0 0.2 GO:0097513 myosin II filament(GO:0097513)
0.0 0.1 GO:0005863 striated muscle myosin thick filament(GO:0005863)
0.0 0.1 GO:0097209 epidermal lamellar body(GO:0097209)
0.0 0.1 GO:0043224 nuclear SCF ubiquitin ligase complex(GO:0043224)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 4.3 GO:0008392 arachidonic acid epoxygenase activity(GO:0008392)
0.1 0.4 GO:0030492 hemoglobin binding(GO:0030492)
0.1 0.2 GO:0016657 GMP reductase activity(GO:0003920) oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor(GO:0016657)
0.0 0.2 GO:0005105 type 1 fibroblast growth factor receptor binding(GO:0005105)
0.0 0.1 GO:0005137 interleukin-5 receptor binding(GO:0005137)
0.0 0.1 GO:0001642 group III metabotropic glutamate receptor activity(GO:0001642)
0.0 0.1 GO:0043758 acetate-CoA ligase (ADP-forming) activity(GO:0043758)
0.0 0.1 GO:0005332 gamma-aminobutyric acid:sodium symporter activity(GO:0005332)
0.0 0.2 GO:0005243 gap junction channel activity(GO:0005243)
0.0 0.1 GO:0019158 fructokinase activity(GO:0008865) mannokinase activity(GO:0019158)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME FGFR4 LIGAND BINDING AND ACTIVATION Genes involved in FGFR4 ligand binding and activation