avrg: GSE58827: Dynamics of the Mouse Liver

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Six4 Links Ensembl NCBI MGI UniProt	ENSMUSG00000034460.10	Six4

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Six4	mm39_v1_chr12_-_73160181_73160230	0.01	9.7e-01	Click!

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Promoter	Score	Transcript	Gene	Gene Info
chr9_+_78137927 Show fit	0.99	ENSMUST00000098537.4	Gsta1 Links Ensembl NCBI MGI UniProt Show fit	glutathione S-transferase, alpha 1 (Ya)
chr9_+_78197205 Show fit	0.69	ENSMUST00000119823.8 ENSMUST00000121273.2	Gsta5 Links Ensembl NCBI MGI UniProt Show fit	glutathione S-transferase alpha 5
chr15_-_103163860 Show fit	0.43	ENSMUST00000075192.13	Nfe2 Links Ensembl NCBI MGI UniProt Show fit	nuclear factor, erythroid derived 2
chr10_+_75399920 Show fit	0.32	ENSMUST00000141062.8 ENSMUST00000152657.8	Ggt1 Links Ensembl NCBI MGI UniProt Show fit	gamma-glutamyltransferase 1
chr15_+_65658874 Show fit	0.32	ENSMUST00000015146.16 ENSMUST00000173858.8 ENSMUST00000172756.2 ENSMUST00000174856.7	Efr3a Links Ensembl NCBI MGI UniProt Show fit	EFR3 homolog A
chr17_+_48717007 Show fit	0.30	ENSMUST00000167180.8 ENSMUST00000046651.7 ENSMUST00000233426.2	Oard1 Links Ensembl NCBI MGI UniProt Show fit	O-acyl-ADP-ribose deacylase 1
chr3_+_40905216 Show fit	0.29	ENSMUST00000191872.6 ENSMUST00000200432.2	Larp1b Links Ensembl NCBI MGI UniProt Show fit	La ribonucleoprotein domain family, member 1B
chr1_-_37929414 Show fit	0.28	ENSMUST00000139725.8 ENSMUST00000027257.10	Mitd1 Links Ensembl NCBI MGI UniProt Show fit	MIT, microtubule interacting and transport, domain containing 1
chr3_+_40905066 Show fit	0.28	ENSMUST00000191805.7	Larp1b Links Ensembl NCBI MGI UniProt Show fit	La ribonucleoprotein domain family, member 1B
chr16_-_65359406 Show fit	0.27	ENSMUST00000231259.2	Chmp2b Links Ensembl NCBI MGI UniProt Show fit	charged multivesicular body protein 2B
chr19_-_38212544 Show fit	0.26	ENSMUST00000067167.6	Fra10ac1 Links Ensembl NCBI MGI UniProt Show fit	FRA10AC1 homolog (human)
chr2_+_119181703 Show fit	0.25	ENSMUST00000028780.4	Chac1 Links Ensembl NCBI MGI UniProt Show fit	ChaC, cation transport regulator 1
chr11_-_45845992 Show fit	0.25	ENSMUST00000109254.2	Thg1l Links Ensembl NCBI MGI UniProt Show fit	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
chr2_-_103627937 Show fit	0.24	ENSMUST00000028607.13	Caprin1 Links Ensembl NCBI MGI UniProt Show fit	cell cycle associated protein 1
chr19_+_6450641 Show fit	0.23	ENSMUST00000113467.2	Rasgrp2 Links Ensembl NCBI MGI UniProt Show fit	RAS, guanyl releasing protein 2
chr16_-_65359566 Show fit	0.22	ENSMUST00000004965.8	Chmp2b Links Ensembl NCBI MGI UniProt Show fit	charged multivesicular body protein 2B
chrX_-_149223883 Show fit	0.21	ENSMUST00000163233.2	Tmem29 Links Ensembl NCBI MGI UniProt Show fit	transmembrane protein 29
chr3_-_92493507 Show fit	0.20	ENSMUST00000194965.6	Smcp Links Ensembl NCBI MGI UniProt Show fit	sperm mitochondria-associated cysteine-rich protein
chr13_-_72111832 Show fit	0.19	ENSMUST00000077337.9	Irx1 Links Ensembl NCBI MGI UniProt Show fit	Iroquois homeobox 1
chr13_+_54225828 Show fit	0.19	ENSMUST00000021930.10	Sfxn1 Links Ensembl NCBI MGI UniProt Show fit	sideroflexin 1
chr3_-_75864195 Show fit	0.18	ENSMUST00000038563.14 ENSMUST00000167078.8 ENSMUST00000117242.8	Golim4 Links Ensembl NCBI MGI UniProt Show fit	golgi integral membrane protein 4
chr12_+_71936500 Show fit	0.18	ENSMUST00000221317.2	Daam1 Links Ensembl NCBI MGI UniProt Show fit	dishevelled associated activator of morphogenesis 1
chr7_+_18725170 Show fit	0.18	ENSMUST00000059331.9 ENSMUST00000131087.2	Mypop Links Ensembl NCBI MGI UniProt Show fit	Myb-related transcription factor, partner of profilin
chr18_-_70186503 Show fit	0.17	ENSMUST00000117692.8 ENSMUST00000069749.9	Rab27b Links Ensembl NCBI MGI UniProt Show fit	RAB27B, member RAS oncogene family
chr1_+_37929558 Show fit	0.17	ENSMUST00000027256.12 ENSMUST00000193673.6 ENSMUST00000160082.3	Mrpl30 Links Ensembl NCBI MGI UniProt Show fit	mitochondrial ribosomal protein L30
chr2_-_10053381 Show fit	0.17	ENSMUST00000026888.11	Taf3 Links Ensembl NCBI MGI UniProt Show fit	TATA-box binding protein associated factor 3
chr4_-_133746138 Show fit	0.16	ENSMUST00000051674.3	Lin28a Links Ensembl NCBI MGI UniProt Show fit	lin-28 homolog A (C. elegans)
chr11_-_45846291 Show fit	0.16	ENSMUST00000011398.13	Thg1l Links Ensembl NCBI MGI UniProt Show fit	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
chr7_+_26819334 Show fit	0.14	ENSMUST00000003100.10	Cyp2f2 Links Ensembl NCBI MGI UniProt Show fit	cytochrome P450, family 2, subfamily f, polypeptide 2
chr17_-_25564501 Show fit	0.14	ENSMUST00000153118.2 ENSMUST00000146856.3	Tpsab1 Links Ensembl NCBI MGI UniProt Show fit	tryptase alpha/beta 1
chr7_+_27879650 Show fit	0.14	ENSMUST00000172467.8	Dyrk1b Links Ensembl NCBI MGI UniProt Show fit	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
chr19_-_6957789 Show fit	0.13	ENSMUST00000070878.9 ENSMUST00000177752.9	Fkbp2 Links Ensembl NCBI MGI UniProt Show fit	FK506 binding protein 2
chr5_-_132570710 Show fit	0.13	ENSMUST00000182974.9	Auts2 Links Ensembl NCBI MGI UniProt Show fit	autism susceptibility candidate 2
chr5_-_41921834 Show fit	0.12	ENSMUST00000060820.8	Nkx3-2 Links Ensembl NCBI MGI UniProt Show fit	NK3 homeobox 2
chr12_-_57592907 Show fit	0.11	ENSMUST00000044380.8	Foxa1 Links Ensembl NCBI MGI UniProt Show fit	forkhead box A1
chr19_+_6450553 Show fit	0.10	ENSMUST00000146831.8 ENSMUST00000035716.15 ENSMUST00000138555.8 ENSMUST00000167240.8	Rasgrp2 Links Ensembl NCBI MGI UniProt Show fit	RAS, guanyl releasing protein 2
chr16_+_11223512 Show fit	0.10	ENSMUST00000096273.9	Snx29 Links Ensembl NCBI MGI UniProt Show fit	sorting nexin 29
chr17_+_25588241 Show fit	0.10	ENSMUST00000160377.8 ENSMUST00000160485.8	Tpsg1 Links Ensembl NCBI MGI UniProt Show fit	tryptase gamma 1
chr6_-_112673565 Show fit	0.10	ENSMUST00000113182.8 ENSMUST00000113180.8 ENSMUST00000068487.12 ENSMUST00000077088.11	Rad18 Links Ensembl NCBI MGI UniProt Show fit	RAD18 E3 ubiquitin protein ligase
chr1_-_131127825 Show fit	0.10	ENSMUST00000068564.15	Rassf5 Links Ensembl NCBI MGI UniProt Show fit	Ras association (RalGDS/AF-6) domain family member 5
chr9_+_30941924 Show fit	0.09	ENSMUST00000216649.2 ENSMUST00000115222.10	Zbtb44 Links Ensembl NCBI MGI UniProt Show fit	zinc finger and BTB domain containing 44
chr5_-_145128321 Show fit	0.09	ENSMUST00000161845.2	Atp5j2 Links Ensembl NCBI MGI UniProt Show fit	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2
chr7_+_17799889 Show fit	0.09	ENSMUST00000108483.2	Ceacam12 Links Ensembl NCBI MGI UniProt Show fit	carcinoembryonic antigen-related cell adhesion molecule 12
chr1_+_171667259 Show fit	0.09	ENSMUST00000155802.9	Cd84 Links Ensembl NCBI MGI UniProt Show fit	CD84 antigen
chr8_+_55024446 Show fit	0.09	ENSMUST00000239166.2 ENSMUST00000239106.2 ENSMUST00000239152.2	Asb5 Links Ensembl NCBI MGI UniProt Show fit	ankyrin repeat and SOCs box-containing 5
chr1_+_36806015 Show fit	0.08	ENSMUST00000185871.2	Zap70 Links Ensembl NCBI MGI UniProt Show fit	zeta-chain (TCR) associated protein kinase
chr9_-_57065572 Show fit	0.08	ENSMUST00000065358.9	Commd4 Links Ensembl NCBI MGI UniProt Show fit	COMM domain containing 4
chr7_+_17799849 Show fit	0.08	ENSMUST00000032520.9	Ceacam12 Links Ensembl NCBI MGI UniProt Show fit	carcinoembryonic antigen-related cell adhesion molecule 12
chr7_+_17799863 Show fit	0.08	ENSMUST00000108487.9	Ceacam12 Links Ensembl NCBI MGI UniProt Show fit	carcinoembryonic antigen-related cell adhesion molecule 12
chr9_+_108782664 Show fit	0.07	ENSMUST00000026740.6	Col7a1 Links Ensembl NCBI MGI UniProt Show fit	collagen, type VII, alpha 1
chr2_+_130975417 Show fit	0.07	ENSMUST00000110225.2	Gm11037 Links Ensembl NCBI MGI UniProt Show fit	predicted gene 11037
chr9_+_108782646 Show fit	0.07	ENSMUST00000112070.8	Col7a1 Links Ensembl NCBI MGI UniProt Show fit	collagen, type VII, alpha 1
chr11_-_34048538 Show fit	0.07	ENSMUST00000223852.2	4930469K13Rik Links Ensembl NCBI MGI UniProt Show fit	RIKEN cDNA 4930469K13 gene
chr8_-_85794611 Show fit	0.07	ENSMUST00000177563.2	Gm5741 Links Ensembl NCBI MGI UniProt Show fit	predicted gene 5741
chr7_+_43474819 Show fit	0.07	ENSMUST00000107967.3	Klk6 Links Ensembl NCBI MGI UniProt Show fit	kallikrein related-peptidase 6
chr19_-_10952028 Show fit	0.07	ENSMUST00000072748.13	Ms4a10 Links Ensembl NCBI MGI UniProt Show fit	membrane-spanning 4-domains, subfamily A, member 10
chrX_-_149224054 Show fit	0.07	ENSMUST00000059256.8	Tmem29 Links Ensembl NCBI MGI UniProt Show fit	transmembrane protein 29
chr17_+_47908025 Show fit	0.07	ENSMUST00000183206.2	Ccnd3 Links Ensembl NCBI MGI UniProt Show fit	cyclin D3
chr11_+_66969119 Show fit	0.07	ENSMUST00000108689.8 ENSMUST00000007301.14 ENSMUST00000165221.2	Myh3 Links Ensembl NCBI MGI UniProt Show fit	myosin, heavy polypeptide 3, skeletal muscle, embryonic
chrX_+_139243012 Show fit	0.07	ENSMUST00000208130.2	Frmpd3 Links Ensembl NCBI MGI UniProt Show fit	FERM and PDZ domain containing 3
chr2_+_31204314 Show fit	0.06	ENSMUST00000113532.9	Hmcn2 Links Ensembl NCBI MGI UniProt Show fit	hemicentin 2
chr6_+_3993774 Show fit	0.06	ENSMUST00000031673.7	Gngt1 Links Ensembl NCBI MGI UniProt Show fit	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
chr10_+_79590910 Show fit	0.06	ENSMUST00000219981.2 ENSMUST00000219228.2 ENSMUST00000020577.4	Fgf22 Links Ensembl NCBI MGI UniProt Show fit	fibroblast growth factor 22
chr10_-_3217767 Show fit	0.06	ENSMUST00000170893.3	H60c Links Ensembl NCBI MGI UniProt Show fit	histocompatibility 60c
chr10_-_3217718 Show fit	0.06	ENSMUST00000216211.2	H60c Links Ensembl NCBI MGI UniProt Show fit	histocompatibility 60c
chr12_-_114160354 Show fit	0.06	ENSMUST00000103476.2 ENSMUST00000191693.2	Ighv3-3 Links Ensembl NCBI MGI UniProt Show fit	immunoglobulin heavy variable V3-3
chr12_-_113726328 Show fit	0.06	ENSMUST00000195381.2	Ighv5-12-4 Links Ensembl NCBI MGI UniProt Show fit	immunoglobulin heavy variable 5-12-4
chr8_+_63404395 Show fit	0.06	ENSMUST00000119068.8	Spock3 Links Ensembl NCBI MGI UniProt Show fit	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
chr5_-_108943211 Show fit	0.05	ENSMUST00000004943.2	Tmed11 Links Ensembl NCBI MGI UniProt Show fit	transmembrane p24 trafficking protein 11
chr7_-_104542833 Show fit	0.05	ENSMUST00000081116.2	Olfr666 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 666
chr8_-_84963653 Show fit	0.05	ENSMUST00000039480.7	Zswim4 Links Ensembl NCBI MGI UniProt Show fit	zinc finger SWIM-type containing 4
chr6_-_72357398 Show fit	0.05	ENSMUST00000101285.10 ENSMUST00000074231.6	Vamp5 Links Ensembl NCBI MGI UniProt Show fit	vesicle-associated membrane protein 5
chr19_-_10952009 Show fit	0.05	ENSMUST00000191343.7	Ms4a10 Links Ensembl NCBI MGI UniProt Show fit	membrane-spanning 4-domains, subfamily A, member 10
chr1_-_13197387 Show fit	0.05	ENSMUST00000047577.7	Prdm14 Links Ensembl NCBI MGI UniProt Show fit	PR domain containing 14
chr13_-_103042554 Show fit	0.04	ENSMUST00000171791.8	Mast4 Links Ensembl NCBI MGI UniProt Show fit	microtubule associated serine/threonine kinase family member 4
chr3_+_138058139 Show fit	0.04	ENSMUST00000090166.5	Adh6b Links Ensembl NCBI MGI UniProt Show fit	alcohol dehydrogenase 6B (class V)
chr6_+_124908389 Show fit	0.04	ENSMUST00000180095.4	Mlf2 Links Ensembl NCBI MGI UniProt Show fit	myeloid leukemia factor 2
chr1_-_153726930 Show fit	0.04	ENSMUST00000059607.8	Teddm2 Links Ensembl NCBI MGI UniProt Show fit	transmembrane epididymal family member 2
chr19_+_29388312 Show fit	0.04	ENSMUST00000112576.4	Pdcd1lg2 Links Ensembl NCBI MGI UniProt Show fit	programmed cell death 1 ligand 2
chr8_+_96429665 Show fit	0.04	ENSMUST00000073139.14 ENSMUST00000080666.8 ENSMUST00000212160.2	Ndrg4 Links Ensembl NCBI MGI UniProt Show fit	N-myc downstream regulated gene 4
chr7_-_107357104 Show fit	0.04	ENSMUST00000208217.2 ENSMUST00000052438.8	Cyb5r2 Links Ensembl NCBI MGI UniProt Show fit	cytochrome b5 reductase 2
chr2_+_153972253 Show fit	0.04	ENSMUST00000028984.13 ENSMUST00000109746.8	Bpifa3 Links Ensembl NCBI MGI UniProt Show fit	BPI fold containing family A, member 3
chr9_+_19047613 Show fit	0.04	ENSMUST00000215699.2	Olfr837 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 837
chr6_+_124908439 Show fit	0.03	ENSMUST00000032214.14	Mlf2 Links Ensembl NCBI MGI UniProt Show fit	myeloid leukemia factor 2
chr11_+_85202990 Show fit	0.03	ENSMUST00000127717.2	Ppm1d Links Ensembl NCBI MGI UniProt Show fit	protein phosphatase 1D magnesium-dependent, delta isoform
chr16_-_20141815 Show fit	0.03	ENSMUST00000023513.12	Cyp2ab1 Links Ensembl NCBI MGI UniProt Show fit	cytochrome P450, family 2, subfamily ab, polypeptide 1
chr6_+_149031668 Show fit	0.03	ENSMUST00000087348.4	Gm10203 Links Ensembl NCBI MGI UniProt Show fit	predicted gene 10203
chr13_+_51799268 Show fit	0.03	ENSMUST00000075853.6	Cks2 Links Ensembl NCBI MGI UniProt Show fit	CDC28 protein kinase regulatory subunit 2
chr4_-_144513121 Show fit	0.03	ENSMUST00000105746.3	Aadacl4fm5 Links Ensembl NCBI MGI UniProt Show fit	AADACL4 family member 5
chr2_-_89951611 Show fit	0.03	ENSMUST00000216493.2 ENSMUST00000214404.2	Olfr1269 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 1269
chr2_-_104324035 Show fit	0.03	ENSMUST00000111124.8	Hipk3 Links Ensembl NCBI MGI UniProt Show fit	homeodomain interacting protein kinase 3
chr2_+_22512195 Show fit	0.02	ENSMUST00000028123.4	Gad2 Links Ensembl NCBI MGI UniProt Show fit	glutamic acid decarboxylase 2
chr3_+_92864693 Show fit	0.02	ENSMUST00000059053.11	Lce3d Links Ensembl NCBI MGI UniProt Show fit	late cornified envelope 3D
chr3_+_138911419 Show fit	0.02	ENSMUST00000106239.8	Stpg2 Links Ensembl NCBI MGI UniProt Show fit	sperm tail PG rich repeat containing 2
chr3_+_138911648 Show fit	0.02	ENSMUST00000062306.7	Stpg2 Links Ensembl NCBI MGI UniProt Show fit	sperm tail PG rich repeat containing 2
chr3_+_145643760 Show fit	0.02	ENSMUST00000039571.14	2410004B18Rik Links Ensembl NCBI MGI UniProt Show fit	RIKEN cDNA 2410004B18 gene
chr3_-_129625023 Show fit	0.02	ENSMUST00000029643.15	Gar1 Links Ensembl NCBI MGI UniProt Show fit	GAR1 ribonucleoprotein
chr10_-_130291919 Show fit	0.02	ENSMUST00000170257.4	Vmn2r86 Links Ensembl NCBI MGI UniProt Show fit	vomeronasal 2, receptor 86
chr17_+_25115461 Show fit	0.02	ENSMUST00000024978.7	Nme3 Links Ensembl NCBI MGI UniProt Show fit	NME/NM23 nucleoside diphosphate kinase 3
chr15_+_91949032 Show fit	0.02	ENSMUST00000169825.8	Cntn1 Links Ensembl NCBI MGI UniProt Show fit	contactin 1
chr3_-_129616183 Show fit	0.01	ENSMUST00000196902.5	Rrh Links Ensembl NCBI MGI UniProt Show fit	retinal pigment epithelium derived rhodopsin homolog
chr6_+_7555053 Show fit	0.01	ENSMUST00000090679.9 ENSMUST00000184986.2	Tac1 Links Ensembl NCBI MGI UniProt Show fit	tachykinin 1
chr8_-_96161466 Show fit	0.00	ENSMUST00000213086.2 ENSMUST00000034249.8	Cfap20 Links Ensembl NCBI MGI UniProt Show fit	cilia and flagella associated protein 20
chr1_+_54289833 Show fit	0.00	ENSMUST00000027128.11	Ccdc150 Links Ensembl NCBI MGI UniProt Show fit	coiled-coil domain containing 150
chr6_+_124908341 Show fit	0.00	ENSMUST00000203021.3	Mlf2 Links Ensembl NCBI MGI UniProt Show fit	myeloid leukemia factor 2
chr15_-_66703471 Show fit	0.00	ENSMUST00000164163.8	Sla Links Ensembl NCBI MGI UniProt Show fit	src-like adaptor
chr7_+_29008840 Show fit	0.00	ENSMUST00000137848.2	Dpf1 Links Ensembl NCBI MGI UniProt Show fit	D4, zinc and double PHD fingers family 1

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0072268	pattern specification involved in metanephros development(GO:0072268)
0.0	0.1	GO:0090420	naphthalene metabolic process(GO:0018931) naphthalene-containing compound metabolic process(GO:0090420)
0.0	0.6	GO:0006751	glutathione catabolic process(GO:0006751)
0.0	0.1	GO:0061144	alveolar secondary septum development(GO:0061144)
0.0	0.8	GO:0000920	cell separation after cytokinesis(GO:0000920)
0.0	0.1	GO:0098582	innate vocalization behavior(GO:0098582)
0.0	1.0	GO:0035634	response to stilbenoid(GO:0035634)
0.0	0.1	GO:0032685	negative regulation of granulocyte macrophage colony-stimulating factor production(GO:0032685)
0.0	0.2	GO:0007341	penetration of zona pellucida(GO:0007341)
0.0	0.2	GO:0071985	multivesicular body sorting pathway(GO:0071985)
0.0	0.4	GO:0034242	negative regulation of syncytium formation by plasma membrane fusion(GO:0034242)
0.0	0.2	GO:0010587	miRNA catabolic process(GO:0010587)
0.0	0.1	GO:0043366	beta selection(GO:0043366)
0.0	0.0	GO:0001827	inner cell mass cell fate commitment(GO:0001827)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.5	GO:0000815	ESCRT III complex(GO:0000815)
0.0	0.2	GO:0032585	multivesicular body membrane(GO:0032585)
0.0	0.1	GO:0042629	mast cell granule(GO:0042629)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0008192	RNA guanylyltransferase activity(GO:0008192)
0.0	0.2	GO:0003839	gamma-glutamylcyclotransferase activity(GO:0003839)
0.0	1.0	GO:0043295	glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.0	0.3	GO:0036374	glutathione hydrolase activity(GO:0036374)
0.0	0.2	GO:1990825	sequence-specific mRNA binding(GO:1990825)
0.0	0.1	GO:0000403	Y-form DNA binding(GO:0000403)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.0	REACTOME GLUTATHIONE CONJUGATION	Genes involved in Glutathione conjugation
0.0	0.5	REACTOME ENDOSOMAL SORTING COMPLEX REQUIRED FOR TRANSPORT ESCRT	Genes involved in Endosomal Sorting Complex Required For Transport (ESCRT)