mm39_v1_chr19_+_39275518_39275548	4.05257	Aire	ENSMUST00000003137.15|Cyp2c29|ENSMUSG00000003053.18|cytochrome P450, family 2, subfamily c, polypeptide 29
mm39_v1_chr6_+_42222841_42222910	3.50581	Aire	ENSMUST00000031897.8|Gstk1|ENSMUSG00000029864.8|glutathione S-transferase kappa 1
mm39_v1_chr10_-_95678786_95678808	2.88595	Aire	ENSMUST00000211096.2|Gm33543|ENSMUSG00000110353.2|predicted gene, 33543
mm39_v1_chr10_-_95678748_95678758	2.80997	Aire	ENSMUST00000210336.2|Gm33543|ENSMUSG00000110353.2|predicted gene, 33543
mm39_v1_chr5_+_8010445_8010464	2.67325	Aire	ENSMUST00000115421.3|Steap4|ENSMUSG00000012428.10|STEAP family member 4
mm39_v1_chr1_+_88128323_88128353	2.3267	Aire	ENSMUST00000049289.9|Ugt1a2|ENSMUSG00000090171.2|UDP glucuronosyltransferase 1 family, polypeptide A2
mm39_v1_chr12_+_84098888_84098931	1.95457	Aire	ENSMUST00000120927.8|Acot3|ENSMUSG00000021228.16|acyl-CoA thioesterase 3	ENSMUST00000021653.8|Acot3|ENSMUSG00000021228.16|acyl-CoA thioesterase 3
mm39_v1_chr5_+_130398261_130398316	1.75697	Aire	ENSMUST00000086029.10|Caln1|ENSMUSG00000060371.13|calneuron 1
mm39_v1_chrM_+_11735_11751	1.73832	Aire	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm39_v1_chr5_+_31079177_31079210	1.67402	Aire	ENSMUST00000031053.15|Khk|ENSMUSG00000029162.16|ketohexokinase	ENSMUST00000202752.2|Khk|ENSMUSG00000029162.16|ketohexokinase
mm39_v1_chr5_+_137979763_137979819	1.61384	Aire	ENSMUST00000035390.7|Azgp1|ENSMUSG00000037053.7|alpha-2-glycoprotein 1, zinc
mm39_v1_chr7_-_127494750_127494821	1.52716	Aire	ENSMUST00000033074.8|Vkorc1|ENSMUSG00000096145.3|vitamin K epoxide reductase complex, subunit 1
mm39_v1_chr7_-_126275529_126275604	1.46868	Aire	ENSMUST00000106372.11|Sult1a1|ENSMUSG00000030711.17|sulfotransferase family 1A, phenol-preferring, member 1	ENSMUST00000155419.3|Sult1a1|ENSMUSG00000030711.17|sulfotransferase family 1A, phenol-preferring, member 1	ENSMUST00000106373.9|Sult1a1|ENSMUSG00000030711.17|sulfotransferase family 1A, phenol-preferring, member 1
mm39_v1_chr15_+_10358611_10358632	1.46027	Aire	ENSMUST00000110541.8|Agxt2|ENSMUSG00000089678.9|alanine-glyoxylate aminotransferase 2	ENSMUST00000110542.8|Agxt2|ENSMUSG00000089678.9|alanine-glyoxylate aminotransferase 2
mm39_v1_chrM_+_7758_7775	1.4461	Aire	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.1|mitochondrially encoded ATP synthase 8
mm39_v1_chr16_+_22877000_22877143	1.40709	Aire	ENSMUST00000039492.14|Kng1|ENSMUSG00000022875.19|kininogen 1	ENSMUST00000023589.15|Kng1|ENSMUSG00000022875.19|kininogen 1	ENSMUST00000089902.8|Kng1|ENSMUSG00000022875.19|kininogen 1
mm39_v1_chr15_+_10358643_10358684	1.40248	Aire	ENSMUST00000022858.8|Agxt2|ENSMUSG00000089678.9|alanine-glyoxylate aminotransferase 2
mm39_v1_chr5_-_121798541_121798582	1.27599	Aire	ENSMUST00000031412.12|Acad10|ENSMUSG00000029456.13|acyl-Coenzyme A dehydrogenase family, member 10	ENSMUST00000111770.2|Acad10|ENSMUSG00000029456.13|acyl-Coenzyme A dehydrogenase family, member 10
mm39_v1_chr15_+_10981833_10981851	1.23559	Aire	ENSMUST00000070877.7|Amacr|ENSMUSG00000022244.8|alpha-methylacyl-CoA racemase
mm39_v1_chr11_-_69586884_69586929	1.21282	Aire	ENSMUST00000180587.8|Tnfsfm13|ENSMUSG00000018752.20|tumor necrosis factor (ligand) superfamily, membrane-bound member 13
mm39_v1_chr16_-_18904240_18904256	1.1909	Aire	ENSMUST00000103746.3|Iglv1|ENSMUSG00000076934.3|immunoglobulin lambda variable 1
mm39_v1_chr10_-_106959444_106959460	1.18176	Aire	ENSMUST00000165067.9|Acss3|ENSMUSG00000035948.14|acyl-CoA synthetase short-chain family member 3
mm39_v1_chrM_+_7006_7021	1.17776	Aire	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm39_v1_chr9_-_108140925_108141014	1.17062	Aire	ENSMUST00000171412.7|Dag1|ENSMUSG00000039952.16|dystroglycan 1	ENSMUST00000195429.6|Dag1|ENSMUSG00000039952.16|dystroglycan 1	ENSMUST00000080435.9|Dag1|ENSMUSG00000039952.16|dystroglycan 1
mm39_v1_chr16_-_22847808_22847826	1.10114	Aire	ENSMUST00000115349.9|Kng2|ENSMUSG00000060459.15|kininogen 2
mm39_v1_chr16_-_22847829_22847856	1.089	Aire	ENSMUST00000100046.9|Kng2|ENSMUSG00000060459.15|kininogen 2
mm39_v1_chr15_-_89263790_89263821	1.07279	Aire	ENSMUST00000238996.2|Odf3b|ENSMUSG00000047394.10|outer dense fiber of sperm tails 3B
mm39_v1_chrM_+_9459_9459	1.07211	Aire	ENSMUST00000082411.1|mt-Nd3|ENSMUSG00000064360.1|mitochondrially encoded NADH dehydrogenase 3
mm39_v1_chrM_+_7779_7927	1.01647	Aire	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm39_v1_chr14_+_3575406_3575440	1.00761	Aire	ENSMUST00000124353.2|Ube2e2|ENSMUSG00000058317.13|ubiquitin-conjugating enzyme E2E 2
mm39_v1_chr17_+_56935118_56935151	0.999346	Aire	ENSMUST00000112979.4|Catsperd|ENSMUSG00000040828.11|cation channel sperm associated auxiliary subunit delta
mm39_v1_chrM_+_14138_14154	0.971718	Aire	ENSMUST00000082421.1|mt-Cytb|ENSMUSG00000064370.1|mitochondrially encoded cytochrome b
mm39_v1_chr5_-_105491795_105491795	0.933287	Aire	ENSMUST00000171587.2|Gbp11|ENSMUSG00000092021.9|guanylate binding protein 11
mm39_v1_chrM_-_14061_14077	0.919592	Aire	ENSMUST00000082419.1|mt-Nd6|ENSMUSG00000064368.1|mitochondrially encoded NADH dehydrogenase 6
mm39_v1_chr12_+_37292029_37292041	0.896781	Aire	ENSMUST00000160390.2|Agmo|ENSMUSG00000050103.19|alkylglycerol monooxygenase
mm39_v1_chrM_+_8603_8615	0.854455	Aire	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm39_v1_chr16_-_19079594_19079640	0.847441	Aire	ENSMUST00000103752.3|Iglv2|ENSMUSG00000076940.4|immunoglobulin lambda variable 2	ENSMUST00000197518.2|Iglv2|ENSMUSG00000076940.4|immunoglobulin lambda variable 2
mm39_v1_chr17_-_74257164_74257186	0.83162	Aire	ENSMUST00000024866.6|Xdh|ENSMUSG00000024066.10|xanthine dehydrogenase
mm39_v1_chr3_+_57332735_57332873	0.822685	Aire	ENSMUST00000029377.8|Tm4sf4|ENSMUSG00000027801.8|transmembrane 4 superfamily member 4
mm39_v1_chr1_-_128287347_128287435	0.787605	Aire	ENSMUST00000190495.2|Mcm6|ENSMUSG00000026355.12|minichromosome maintenance complex component 6	ENSMUST00000027601.11|Mcm6|ENSMUSG00000026355.12|minichromosome maintenance complex component 6
mm39_v1_chr7_-_126522014_126522098	0.76556	Aire	ENSMUST00000134134.3|Tmem219|ENSMUSG00000060538.15|transmembrane protein 219	ENSMUST00000119781.8|Tmem219|ENSMUSG00000060538.15|transmembrane protein 219	ENSMUST00000121612.4|Tmem219|ENSMUSG00000060538.15|transmembrane protein 219
mm39_v1_chr13_+_64309675_64309729	0.711864	Aire	ENSMUST00000021929.10|Habp4|ENSMUSG00000021476.10|hyaluronic acid binding protein 4
mm39_v1_chr10_-_127587576_127587606	0.706315	Aire	ENSMUST00000079692.6|Gpr182|ENSMUSG00000058396.8|G protein-coupled receptor 182
mm39_v1_chr1_-_90771674_90771703	0.612261	Aire	ENSMUST00000097653.11|Col6a3|ENSMUSG00000048126.17|collagen, type VI, alpha 3	ENSMUST00000188587.7|Col6a3|ENSMUSG00000048126.17|collagen, type VI, alpha 3	ENSMUST00000056925.16|Col6a3|ENSMUSG00000048126.17|collagen, type VI, alpha 3	ENSMUST00000187753.2|Col6a3|ENSMUSG00000048126.17|collagen, type VI, alpha 3
mm39_v1_chr7_-_19398930_19398958	0.571177	Aire	ENSMUST00000055242.11|Clptm1|ENSMUSG00000002981.11|cleft lip and palate associated transmembrane protein 1
mm39_v1_chr17_-_59320257_59320367	0.570033	Aire	ENSMUST00000174122.2|Nudt12|ENSMUSG00000024228.13|nudix (nucleoside diphosphate linked moiety X)-type motif 12	ENSMUST00000025065.12|Nudt12|ENSMUSG00000024228.13|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm39_v1_chr7_-_45136235_45136235	0.553535	Aire	ENSMUST00000210701.2|Gm45808|ENSMUSG00000109926.2|predicted gene 45808
mm39_v1_chr3_-_89319088_89319202	0.548234	Aire	ENSMUST00000107429.10|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1	ENSMUST00000129308.9|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1	ENSMUST00000107426.8|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1	ENSMUST00000050398.11|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1	ENSMUST00000162701.2|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1
mm39_v1_chr17_-_35827676_35827732	0.541883	Aire	ENSMUST00000160885.2|Tcf19|ENSMUSG00000050410.16|transcription factor 19	ENSMUST00000159009.2|Tcf19|ENSMUSG00000050410.16|transcription factor 19	ENSMUST00000161012.8|Tcf19|ENSMUSG00000050410.16|transcription factor 19
mm39_v1_chr14_+_76714350_76714371	0.483625	Aire	ENSMUST00000140251.9|Tsc22d1|ENSMUSG00000022010.20|TSC22 domain family, member 1
mm39_v1_chr17_+_31652029_31652045	0.479728	Aire	ENSMUST00000136384.9|Pde9a|ENSMUSG00000041119.13|phosphodiesterase 9A
mm39_v1_chr9_+_45924120_45924298	0.439983	Aire	ENSMUST00000120463.9|Sik3|ENSMUSG00000034135.16|SIK family kinase 3	ENSMUST00000120247.8|Sik3|ENSMUSG00000034135.16|SIK family kinase 3
mm39_v1_chr11_+_97206542_97206734	0.430773	Aire	ENSMUST00000019026.10|Mrpl45|ENSMUSG00000018882.13|mitochondrial ribosomal protein L45	ENSMUST00000132168.2|Mrpl45|ENSMUSG00000018882.13|mitochondrial ribosomal protein L45
mm39_v1_chr9_+_108883907_108883939	0.426597	Aire	ENSMUST00000154184.5|Shisa5|ENSMUSG00000025647.17|shisa family member 5
mm39_v1_chr11_+_48977495_48977527	0.422767	Aire	ENSMUST00000152914.2|Ifi47|ENSMUSG00000078920.4|interferon gamma inducible protein 47
mm39_v1_chr1_-_45542442_45542442	0.39053	Aire	ENSMUST00000086430.5|Col5a2|ENSMUSG00000026042.17|collagen, type V, alpha 2
mm39_v1_chr5_-_100521343_100521393	0.382972	Aire	ENSMUST00000182433.8|Sec31a|ENSMUSG00000035325.17|Sec31 homolog A (S. cerevisiae)
mm39_v1_chr9_+_45924105_45924119	0.373479	Aire	ENSMUST00000126865.8|Sik3|ENSMUSG00000034135.16|SIK family kinase 3
mm39_v1_chr11_-_66943389_66943443	0.361977	Aire	ENSMUST00000116363.2|Adprm|ENSMUSG00000020910.17|ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
mm39_v1_chr1_-_65225617_65225663	0.310909	Aire	ENSMUST00000186222.7|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble	ENSMUST00000169032.8|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble	ENSMUST00000191459.2|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble	ENSMUST00000188876.7|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble
mm39_v1_chr7_+_45546365_45546525	0.305604	Aire	ENSMUST00000069772.16|Tmem143|ENSMUSG00000002781.20|transmembrane protein 143	ENSMUST00000210503.2|Tmem143|ENSMUSG00000002781.20|transmembrane protein 143	ENSMUST00000209350.2|Tmem143|ENSMUSG00000002781.20|transmembrane protein 143
mm39_v1_chr17_+_35455532_35455594	0.305507	Aire	ENSMUST00000068261.9|Atp6v1g2|ENSMUSG00000024403.17|ATPase, H+ transporting, lysosomal V1 subunit G2
mm39_v1_chr5_-_50216249_50216352	0.290239	Aire	ENSMUST00000030971.7|Adgra3|ENSMUSG00000029090.13|adhesion G protein-coupled receptor A3
mm39_v1_chr1_-_65225572_65225597	0.290195	Aire	ENSMUST00000188109.7|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble
mm39_v1_chr5_+_115034997_115035091	0.285094	Aire	ENSMUST00000031542.13|Oasl2|ENSMUSG00000029561.18|2'-5' oligoadenylate synthetase-like 2	ENSMUST00000146072.8|Oasl2|ENSMUSG00000029561.18|2'-5' oligoadenylate synthetase-like 2	ENSMUST00000150361.2|Oasl2|ENSMUSG00000029561.18|2'-5' oligoadenylate synthetase-like 2
mm39_v1_chr17_-_56343531_56343624	0.283027	Aire	ENSMUST00000233803.2|Sh3gl1|ENSMUSG00000003200.11|SH3-domain GRB2-like 1
mm39_v1_chr11_+_17161912_17161964	0.251154	Aire	ENSMUST00000046955.7|Wdr92|ENSMUSG00000078970.6|WD repeat domain 92
mm39_v1_chr15_-_76809607_76809648	0.245161	Aire	ENSMUST00000229865.2|Zfp647|ENSMUSG00000054967.8|zinc finger protein 647	ENSMUST00000229055.2|Zfp647|ENSMUSG00000054967.8|zinc finger protein 647
mm39_v1_chr12_+_36207113_36207131	0.233354	Aire	ENSMUST00000041640.5|Ankmy2|ENSMUSG00000036188.5|ankyrin repeat and MYND domain containing 2
mm39_v1_chr6_-_3399451_3399572	0.224714	Aire	ENSMUST00000120087.6|Samd9l|ENSMUSG00000047735.15|sterile alpha motif domain containing 9-like
mm39_v1_chr6_+_91678630_91678643	0.217902	Aire	ENSMUST00000205828.2|Slc6a6|ENSMUSG00000030096.9|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm39_v1_chr6_-_91492860_91492871	0.21701	Aire	ENSMUST00000206476.2|Xpc|ENSMUSG00000030094.9|xeroderma pigmentosum, complementation group C	ENSMUST00000032182.5|Xpc|ENSMUSG00000030094.9|xeroderma pigmentosum, complementation group C
mm39_v1_chr1_-_90771638_90771666	0.207118	Aire	ENSMUST00000130846.9|Col6a3|ENSMUSG00000048126.17|collagen, type VI, alpha 3
mm39_v1_chr7_+_28869770_28869929	0.199228	Aire	ENSMUST00000033886.8|Ggn|ENSMUSG00000031493.11|gametogenetin	ENSMUST00000209019.2|Ggn|ENSMUSG00000031493.11|gametogenetin	ENSMUST00000208330.2|Ggn|ENSMUSG00000031493.11|gametogenetin
mm39_v1_chr11_+_66943453_66943534	0.194656	Aire	ENSMUST00000108690.10|Sco1|ENSMUSG00000069844.13|SCO1 cytochrome c oxidase assembly protein	ENSMUST00000092996.5|Sco1|ENSMUSG00000069844.13|SCO1 cytochrome c oxidase assembly protein
mm39_v1_chr2_+_89804937_89804962	0.182505	Aire	ENSMUST00000214630.2|Olfr1260|ENSMUSG00000042894.12|olfactory receptor 1260	ENSMUST00000111512.10|Olfr1260|ENSMUSG00000042894.12|olfactory receptor 1260	ENSMUST00000144710.3|Olfr1260|ENSMUSG00000042894.12|olfactory receptor 1260	ENSMUST00000216678.2|Olfr1260|ENSMUSG00000042894.12|olfactory receptor 1260
mm39_v1_chr18_+_37858753_37858810	0.182136	Aire	ENSMUST00000066149.9|Pcdhga8|ENSMUSG00000103897.2|protocadherin gamma subfamily A, 8
mm39_v1_chr8_+_112370088_112370170	0.169025	Aire	ENSMUST00000077791.8|Zfp1|ENSMUSG00000055835.11|zinc finger protein 1	ENSMUST00000211926.2|Zfp1|ENSMUSG00000055835.11|zinc finger protein 1
mm39_v1_chr3_+_89986831_89986847	0.166575	Aire	ENSMUST00000029549.16|Tpm3|ENSMUSG00000027940.19|tropomyosin 3, gamma
mm39_v1_chr11_+_105866030_105866045	0.149393	Aire	ENSMUST00000001964.8|Ace|ENSMUSG00000020681.15|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
mm39_v1_chr1_+_44159106_44159147	0.149001	Aire	ENSMUST00000114709.3|Bivm|ENSMUSG00000041684.12|basic, immunoglobulin-like variable motif containing	ENSMUST00000129068.2|Bivm|ENSMUSG00000041684.12|basic, immunoglobulin-like variable motif containing
mm39_v1_chr8_+_112370033_112370082	0.146157	Aire	ENSMUST00000212072.2|Zfp1|ENSMUSG00000055835.11|zinc finger protein 1
mm39_v1_chr7_+_30681287_30681298	0.128049	Aire	ENSMUST00000128384.3|Fam187b|ENSMUSG00000046826.8|family with sequence similarity 187, member B
mm39_v1_chr13_+_49658249_49658292	0.124664	Aire	ENSMUST00000051504.8|Ecm2|ENSMUSG00000043631.9|extracellular matrix protein 2, female organ and adipocyte specific
mm39_v1_chr6_+_41039255_41039272	0.117714	Aire	ENSMUST00000103266.3|Trbv5|ENSMUSG00000076465.3|T cell receptor beta, variable 5
mm39_v1_chr9_-_19163273_19163283	0.111501	Aire	ENSMUST00000214019.2|Olfr843|ENSMUSG00000048391.4|olfactory receptor 843	ENSMUST00000214267.2|Olfr843|ENSMUSG00000048391.4|olfactory receptor 843
mm39_v1_chr10_+_3822667_3822789	0.106667	Aire	ENSMUST00000136671.8|Plekhg1|ENSMUSG00000040624.19|pleckstrin homology domain containing, family G (with RhoGef domain) member 1	ENSMUST00000042438.13|Plekhg1|ENSMUSG00000040624.19|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm39_v1_chr3_+_92339886_92339892	0.105988	Aire	ENSMUST00000067102.3|Sprr2k|ENSMUSG00000054215.3|small proline-rich protein 2K
mm39_v1_chrY_-_79161056_79161056	0.100607	Aire	ENSMUST00000179922.2|Gm20917|ENSMUSG00000095867.3|predicted gene, 20917
mm39_v1_chr11_-_49077864_49077903	0.0951878	Aire	ENSMUST00000153999.3|Btnl9|ENSMUSG00000040283.15|butyrophilin-like 9	ENSMUST00000066531.13|Btnl9|ENSMUSG00000040283.15|butyrophilin-like 9
mm39_v1_chr11_-_115518774_115518948	0.0924801	Aire	ENSMUST00000154623.2|Slc25a19|ENSMUSG00000020744.14|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	ENSMUST00000106503.10|Slc25a19|ENSMUSG00000020744.14|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	ENSMUST00000141614.3|Slc25a19|ENSMUSG00000020744.14|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm39_v1_chr2_-_93841152_93841168	0.0924744	Aire	ENSMUST00000111240.8|Alkbh3|ENSMUSG00000040174.15|alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
mm39_v1_chr8_+_65399831_65399907	0.091858	Aire	ENSMUST00000026595.13|Tmem192|ENSMUSG00000025521.16|transmembrane protein 192	ENSMUST00000209852.2|Tmem192|ENSMUSG00000025521.16|transmembrane protein 192	ENSMUST00000079896.9|Tmem192|ENSMUSG00000025521.16|transmembrane protein 192
mm39_v1_chr3_+_82933383_82933522	0.0898178	Aire	ENSMUST00000029630.15|Fga|ENSMUSG00000028001.17|fibrinogen alpha chain	ENSMUST00000166581.4|Fga|ENSMUSG00000028001.17|fibrinogen alpha chain
mm39_v1_chr2_-_93841062_93841109	0.0897416	Aire	ENSMUST00000040005.13|Alkbh3|ENSMUSG00000040174.15|alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	ENSMUST00000126378.8|Alkbh3|ENSMUSG00000040174.15|alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
mm39_v1_chr16_+_36695479_36695566	0.0821644	Aire	ENSMUST00000023534.7|Golgb1|ENSMUSG00000034243.18|golgi autoantigen, golgin subfamily b, macrogolgin 1	ENSMUST00000114812.9|Golgb1|ENSMUSG00000034243.18|golgi autoantigen, golgin subfamily b, macrogolgin 1	ENSMUST00000134616.8|Golgb1|ENSMUSG00000034243.18|golgi autoantigen, golgin subfamily b, macrogolgin 1
mm39_v1_chrX_-_91059789_91059939	0.0819	Aire	ENSMUST00000099471.3|Mageb1|ENSMUSG00000062162.3|MAGE family member B1	ENSMUST00000072269.2|Mageb1|ENSMUSG00000062162.3|MAGE family member B1
mm39_v1_chr9_-_110818679_110818796	0.080248	Aire	ENSMUST00000084922.6|Rtp3|ENSMUSG00000066319.7|receptor transporter protein 3	ENSMUST00000199891.2|Rtp3|ENSMUSG00000066319.7|receptor transporter protein 3
mm39_v1_chr16_-_91415873_91415914	0.0717256	Aire	ENSMUST00000143058.2|Dnajc28|ENSMUSG00000039763.11|DnaJ heat shock protein family (Hsp40) member C28	ENSMUST00000049244.10|Dnajc28|ENSMUSG00000039763.11|DnaJ heat shock protein family (Hsp40) member C28	ENSMUST00000169982.2|Dnajc28|ENSMUSG00000039763.11|DnaJ heat shock protein family (Hsp40) member C28	ENSMUST00000133731.2|Dnajc28|ENSMUSG00000039763.11|DnaJ heat shock protein family (Hsp40) member C28
mm39_v1_chr14_-_50919102_50919102	0.0667699	Aire	ENSMUST00000078075.5|Olfr747|ENSMUSG00000057179.7|olfactory receptor 747
mm39_v1_chr4_-_118667141_118667141	0.0664768	Aire	ENSMUST00000084313.5|Olfr1335|ENSMUSG00000066061.7|olfactory receptor 1335	ENSMUST00000219094.2|Olfr1335|ENSMUSG00000066061.7|olfactory receptor 1335
mm39_v1_chr2_-_112089627_112089656	0.0655706	Aire	ENSMUST00000043970.2|Nutm1|ENSMUSG00000041358.2|NUT midline carcinoma, family member 1
mm39_v1_chr11_-_96002784_96002814	0.0633818	Aire	ENSMUST00000097162.6|Calcoco2|ENSMUSG00000006056.14|calcium binding and coiled-coil domain 2	ENSMUST00000068686.13|Calcoco2|ENSMUSG00000006056.14|calcium binding and coiled-coil domain 2
mm39_v1_chr10_-_130116088_130116111	0.0596047	Aire	ENSMUST00000061571.5|Neurod4|ENSMUSG00000048015.5|neurogenic differentiation 4
mm39_v1_chr2_+_83554741_83554763	0.0560261	Aire	ENSMUST00000028499.11|Itgav|ENSMUSG00000027087.12|integrin alpha V
mm39_v1_chr2_+_128433125_128433144	0.0553842	Aire	ENSMUST00000155430.8|Spdye4c|ENSMUSG00000074812.13|speedy/RINGO cell cycle regulator family, member E4C
mm39_v1_chr3_-_92734546_92734562	0.0479993	Aire	ENSMUST00000072363.5|Kprp|ENSMUSG00000059832.5|keratinocyte expressed, proline-rich
mm39_v1_chr1_-_85247864_85247899	0.0477081	Aire	ENSMUST00000159582.8|C130026I21Rik|ENSMUSG00000052477.16|RIKEN cDNA C130026I21 gene	ENSMUST00000161267.8|C130026I21Rik|ENSMUSG00000052477.16|RIKEN cDNA C130026I21 gene
mm39_v1_chr1_+_189460461_189460523	0.0473784	Aire	ENSMUST00000097442.9|Ptpn14|ENSMUSG00000026604.18|protein tyrosine phosphatase, non-receptor type 14
mm39_v1_chr16_-_36695166_36695224	0.0459428	Aire	ENSMUST00000075946.12|Eaf2|ENSMUSG00000022838.15|ELL associated factor 2
mm39_v1_chr10_+_80441855_80441855	0.0423454	Aire	ENSMUST00000178231.2|Gm49322|ENSMUSG00000035370.10|predicted gene, 49322
mm39_v1_chr3_-_95125190_95125229	0.0398247	Aire	ENSMUST00000136139.8|Gabpb2|ENSMUSG00000038766.17|GA repeat binding protein, beta 2
mm39_v1_chr8_+_47439916_47439946	0.0380622	Aire	ENSMUST00000039840.15|Enpp6|ENSMUSG00000038173.16|ectonucleotide pyrophosphatase/phosphodiesterase 6
mm39_v1_chr15_-_98063441_98063470	0.0361468	Aire	ENSMUST00000123922.2|Asb8|ENSMUSG00000048175.14|ankyrin repeat and SOCS box-containing 8
mm39_v1_chr17_+_87943401_87943423	0.0279165	Aire	ENSMUST00000235125.2|Epcam|ENSMUSG00000045394.10|epithelial cell adhesion molecule	ENSMUST00000053577.9|Epcam|ENSMUSG00000045394.10|epithelial cell adhesion molecule	ENSMUST00000234009.2|Epcam|ENSMUSG00000045394.10|epithelial cell adhesion molecule
mm39_v1_chr15_-_75793312_75793409	0.0252323	Aire	ENSMUST00000053918.9|Pycrl|ENSMUSG00000022571.10|pyrroline-5-carboxylate reductase-like
mm39_v1_chrX_-_6907858_6907897	0.0247229	Aire	ENSMUST00000115752.8|Ccnb3|ENSMUSG00000051592.15|cyclin B3
mm39_v1_chr6_+_11907808_11907910	0.0233621	Aire	ENSMUST00000155037.4|Phf14|ENSMUSG00000029629.18|PHD finger protein 14
mm39_v1_chr1_+_173877941_173877941	0.0209694	Aire	ENSMUST00000062665.4|Olfr432|ENSMUSG00000047048.5|olfactory receptor 432
mm39_v1_chr8_-_110688716_110688846	0.0166546	Aire	ENSMUST00000001722.14|Marveld3|ENSMUSG00000001672.15|MARVEL (membrane-associating) domain containing 3	ENSMUST00000051430.7|Marveld3|ENSMUSG00000001672.15|MARVEL (membrane-associating) domain containing 3
mm39_v1_chr9_-_39920878_39920878	0.0161892	Aire	ENSMUST00000216463.3|Olfr980|ENSMUSG00000060254.8|olfactory receptor 980
mm39_v1_chr1_+_21419819_21419865	0.0125328	Aire	ENSMUST00000088407.4|Khdc1a|ENSMUSG00000067750.4|KH domain containing 1A
mm39_v1_chr13_-_105429514_105429523	0.00643369	Aire	ENSMUST00000224011.2|Rnf180|ENSMUSG00000021720.12|ring finger protein 180
mm39_v1_chr14_+_53531798_53531798	0.00611152	Aire	ENSMUST00000103626.3|Trav9n-4|ENSMUSG00000094231.3|T cell receptor alpha variable 9N-4
mm39_v1_chr5_-_105198913_105198913	0.00580494	Aire	ENSMUST00000112718.5|Gbp8|ENSMUSG00000034438.17|guanylate-binding protein 8
mm39_v1_chr7_-_84059170_84059210	0.00564288	Aire	ENSMUST00000208995.2|Arnt2|ENSMUSG00000015709.10|aryl hydrocarbon receptor nuclear translocator 2
mm39_v1_chr3_+_107008867_107008883	0.0050209	Aire	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr11_+_62349238_62349295	0.000347061	Aire	ENSMUST00000014389.6|Pigl|ENSMUSG00000014245.9|phosphatidylinositol glycan anchor biosynthesis, class L
