mm39_v1_chr3_-_106057077_106057108	5.32861	Foxg1	ENSMUST00000149836.2|Chil3|ENSMUSG00000040809.11|chitinase-like 3
mm39_v1_chr15_+_79775894_79775905	4.44335	Foxg1	ENSMUST00000177483.8|Apobec3|ENSMUSG00000009585.19|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3
mm39_v1_chr7_+_142558783_142558835	4.28887	Foxg1	ENSMUST00000009396.13|Tspan32|ENSMUSG00000000244.18|tetraspanin 32
mm39_v1_chr7_+_142558837_142558881	3.77433	Foxg1	ENSMUST00000207211.2|Tspan32|ENSMUSG00000000244.18|tetraspanin 32
mm39_v1_chr2_-_152672535_152672600	3.73342	Foxg1	ENSMUST00000146380.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000134902.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000134357.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000109820.5|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1
mm39_v1_chr1_-_180641159_180641197	3.65335	Foxg1	ENSMUST00000162118.8|H3f3a|ENSMUSG00000060743.13|H3.3 histone A	ENSMUST00000159685.2|H3f3a|ENSMUSG00000060743.13|H3.3 histone A	ENSMUST00000161308.8|H3f3a|ENSMUSG00000060743.13|H3.3 histone A
mm39_v1_chr1_-_180641430_180641508	3.47926	Foxg1	ENSMUST00000162814.8|H3f3a|ENSMUSG00000060743.13|H3.3 histone A
mm39_v1_chr1_-_180641099_180641148	3.44687	Foxg1	ENSMUST00000159789.2|H3f3a|ENSMUSG00000060743.13|H3.3 histone A	ENSMUST00000081026.11|H3f3a|ENSMUSG00000060743.13|H3.3 histone A
mm39_v1_chr10_-_120312374_120312388	3.34219	Foxg1	ENSMUST00000072777.14|Hmga2|ENSMUSG00000056758.15|high mobility group AT-hook 2	ENSMUST00000159699.2|Hmga2|ENSMUSG00000056758.15|high mobility group AT-hook 2
mm39_v1_chr1_+_82817388_82817455	2.89623	Foxg1	ENSMUST00000190052.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000063380.11|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000187899.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000186302.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000190046.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr15_+_79775819_79775878	2.87765	Foxg1	ENSMUST00000177350.8|Apobec3|ENSMUSG00000009585.19|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3
mm39_v1_chr2_-_152673032_152673246	2.84098	Foxg1	ENSMUST00000128172.3|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1
mm39_v1_chr15_+_103148824_103148921	2.74544	Foxg1	ENSMUST00000036004.16|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1	ENSMUST00000087351.9|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1	ENSMUST00000231141.2|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1
mm39_v1_chr18_+_68433422_68433493	2.57863	Foxg1	ENSMUST00000009679.11|Rnmt|ENSMUSG00000009535.14|RNA (guanine-7-) methyltransferase	ENSMUST00000131075.8|Rnmt|ENSMUSG00000009535.14|RNA (guanine-7-) methyltransferase	ENSMUST00000025427.14|Rnmt|ENSMUSG00000009535.14|RNA (guanine-7-) methyltransferase	ENSMUST00000139111.2|Rnmt|ENSMUSG00000009535.14|RNA (guanine-7-) methyltransferase
mm39_v1_chr1_+_82817170_82817239	2.56234	Foxg1	ENSMUST00000189220.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000113444.8|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr1_-_79838897_79839020	2.18554	Foxg1	ENSMUST00000190724.2|Serpine2|ENSMUSG00000026249.11|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm39_v1_chr1_+_180762587_180762611	1.54265	Foxg1	ENSMUST00000037361.9|Lefty1|ENSMUSG00000038793.9|left right determination factor 1
mm39_v1_chr7_+_79848138_79848207	1.49007	Foxg1	ENSMUST00000205822.2|Sema4b|ENSMUSG00000030539.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm39_v1_chr5_+_34527230_34527323	1.38517	Foxg1	ENSMUST00000180376.8|Fam193a|ENSMUSG00000037210.17|family with sequence homology 193, member A
mm39_v1_chr7_-_115423934_115423987	1.31531	Foxg1	ENSMUST00000169129.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr6_-_72322116_72322189	1.2664	Foxg1	ENSMUST00000070345.5|Usp39|ENSMUSG00000056305.5|ubiquitin specific peptidase 39
mm39_v1_chr13_-_3968157_3968220	1.16704	Foxg1	ENSMUST00000223258.2|Net1|ENSMUSG00000021215.16|neuroepithelial cell transforming gene 1	ENSMUST00000091853.12|Net1|ENSMUSG00000021215.16|neuroepithelial cell transforming gene 1
mm39_v1_chr2_+_120331784_120331815	0.826894	Foxg1	ENSMUST00000151342.3|Capn3|ENSMUSG00000079110.13|calpain 3
mm39_v1_chr12_-_112964279_112964324	0.82239	Foxg1	ENSMUST00000011302.9|Brf1|ENSMUSG00000011158.9|BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
mm39_v1_chr1_-_120432477_120432497	0.645542	Foxg1	ENSMUST00000186432.3|Marco|ENSMUSG00000026390.8|macrophage receptor with collagenous structure
mm39_v1_chr7_+_75498058_75498189	0.580968	Foxg1	ENSMUST00000171155.4|Klhl25|ENSMUSG00000055652.15|kelch-like 25	ENSMUST00000092073.11|Klhl25|ENSMUSG00000055652.15|kelch-like 25	ENSMUST00000206019.2|Klhl25|ENSMUSG00000055652.15|kelch-like 25	ENSMUST00000205612.2|Klhl25|ENSMUSG00000055652.15|kelch-like 25	ENSMUST00000205887.2|Klhl25|ENSMUSG00000055652.15|kelch-like 25
mm39_v1_chr5_-_121329385_121329501	0.579607	Foxg1	ENSMUST00000054547.9|Ptpn11|ENSMUSG00000043733.15|protein tyrosine phosphatase, non-receptor type 11	ENSMUST00000100770.9|Ptpn11|ENSMUSG00000043733.15|protein tyrosine phosphatase, non-receptor type 11
mm39_v1_chr19_+_8595369_8595421	0.520347	Foxg1	ENSMUST00000010250.4|Slc22a6|ENSMUSG00000024650.6|solute carrier family 22 (organic anion transporter), member 6
mm39_v1_chr9_+_54493784_54493796	0.486534	Foxg1	ENSMUST00000167866.2|Idh3a|ENSMUSG00000032279.12|isocitrate dehydrogenase 3 (NAD+) alpha
mm39_v1_chr9_+_54493618_54493752	0.483654	Foxg1	ENSMUST00000217484.2|Idh3a|ENSMUSG00000032279.12|isocitrate dehydrogenase 3 (NAD+) alpha
mm39_v1_chr3_-_127019496_127019608	0.470062	Foxg1	ENSMUST00000182064.9|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain	ENSMUST00000182452.8|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain
mm39_v1_chr11_+_3438274_3438287	0.434143	Foxg1	ENSMUST00000064265.13|Pla2g3|ENSMUSG00000034579.18|phospholipase A2, group III
mm39_v1_chr3_-_94922525_94922572	0.414374	Foxg1	ENSMUST00000128438.2|Zfp687|ENSMUSG00000019338.14|zinc finger protein 687	ENSMUST00000149747.2|Zfp687|ENSMUSG00000019338.14|zinc finger protein 687	ENSMUST00000019482.8|Zfp687|ENSMUSG00000019338.14|zinc finger protein 687
mm39_v1_chr14_-_24295988_24295988	0.405394	Foxg1	ENSMUST00000073687.13|Dlg5|ENSMUSG00000021782.15|discs large MAGUK scaffold protein 5	ENSMUST00000090398.11|Dlg5|ENSMUSG00000021782.15|discs large MAGUK scaffold protein 5
mm39_v1_chr4_-_108690741_108690794	0.391147	Foxg1	ENSMUST00000102740.8|Btf3l4|ENSMUSG00000028568.17|basic transcription factor 3-like 4	ENSMUST00000102741.8|Btf3l4|ENSMUSG00000028568.17|basic transcription factor 3-like 4
mm39_v1_chr9_-_60557076_60557087	0.355094	Foxg1	ENSMUST00000053171.14|Lrrc49|ENSMUSG00000047766.16|leucine rich repeat containing 49
mm39_v1_chr17_+_34596098_34596128	0.345541	Foxg1	ENSMUST00000080254.7|Btnl1|ENSMUSG00000062638.12|butyrophilin-like 1
mm39_v1_chr15_-_85466009_85466022	0.307826	Foxg1	ENSMUST00000023015.15|Wnt7b|ENSMUSG00000022382.16|wingless-type MMTV integration site family, member 7B
mm39_v1_chr5_-_142892457_142892509	0.274951	Foxg1	ENSMUST00000167721.8|Actb|ENSMUSG00000029580.15|actin, beta	ENSMUST00000163829.2|Actb|ENSMUSG00000029580.15|actin, beta	ENSMUST00000100497.11|Actb|ENSMUSG00000029580.15|actin, beta
mm39_v1_chr2_+_4394425_4394498	0.272921	Foxg1	ENSMUST00000115037.9|Frmd4a|ENSMUSG00000026657.18|FERM domain containing 4A
mm39_v1_chr9_+_106048116_106048153	0.25469	Foxg1	ENSMUST00000020490.13|Wdr82|ENSMUSG00000020257.14|WD repeat domain containing 82
mm39_v1_chr13_+_34346936_34347016	0.24724	Foxg1	ENSMUST00000124996.8|Psmg4|ENSMUSG00000071451.11|proteasome (prosome, macropain) assembly chaperone 4	ENSMUST00000147632.3|Psmg4|ENSMUSG00000071451.11|proteasome (prosome, macropain) assembly chaperone 4
mm39_v1_chr2_+_88479038_88479038	0.205404	Foxg1	ENSMUST00000120518.4|Olfr1192-ps1|ENSMUSG00000111590.3|olfactory receptor 1192, pseudogene 1
mm39_v1_chr1_-_72914036_72914050	0.184712	Foxg1	ENSMUST00000027377.9|Igfbp5|ENSMUSG00000026185.9|insulin-like growth factor binding protein 5
mm39_v1_chr8_+_112262729_112262815	0.182605	Foxg1	ENSMUST00000172856.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1
mm39_v1_chr2_-_162929732_162929775	0.161597	Foxg1	ENSMUST00000094653.6|Gtsf1l|ENSMUSG00000070708.6|gametocyte specific factor 1-like
mm39_v1_chr15_+_66449385_66449487	0.147595	Foxg1	ENSMUST00000230882.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000048188.10|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000230948.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000229160.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1
mm39_v1_chr3_-_50398027_50398063	0.147511	Foxg1	ENSMUST00000029297.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	ENSMUST00000194462.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm39_v1_chr10_-_77618376_77618376	0.112516	Foxg1	ENSMUST00000167358.2|Gm3250|ENSMUSG00000096481.2|predicted gene 3250
mm39_v1_chr18_+_73992446_73992473	0.112204	Foxg1	ENSMUST00000120033.8|Mro|ENSMUSG00000064036.16|maestro	ENSMUST00000179472.8|Mro|ENSMUSG00000064036.16|maestro	ENSMUST00000119239.8|Mro|ENSMUSG00000064036.16|maestro
mm39_v1_chr2_-_154400753_154400816	0.0987978	Foxg1	ENSMUST00000109716.9|Necab3|ENSMUSG00000027489.16|N-terminal EF-hand calcium binding protein 3	ENSMUST00000000895.13|Necab3|ENSMUSG00000027489.16|N-terminal EF-hand calcium binding protein 3	ENSMUST00000125793.2|Necab3|ENSMUSG00000027489.16|N-terminal EF-hand calcium binding protein 3
mm39_v1_chr3_-_94922727_94922773	0.0706529	Foxg1	ENSMUST00000132195.8|Zfp687|ENSMUSG00000019338.14|zinc finger protein 687
mm39_v1_chr6_-_40864428_40864428	0.0604764	Foxg1	ENSMUST00000031937.4|Moxd2|ENSMUSG00000029885.4|monooxygenase, DBH-like 2
mm39_v1_chr8_+_84793453_84793511	0.0582014	Foxg1	ENSMUST00000211046.2|Rfx1|ENSMUSG00000031706.8|regulatory factor X, 1 (influences HLA class II expression)	ENSMUST00000005600.6|Rfx1|ENSMUSG00000031706.8|regulatory factor X, 1 (influences HLA class II expression)
mm39_v1_chr9_+_64028783_64028888	0.0152519	Foxg1	ENSMUST00000118215.3|Lctl|ENSMUSG00000032401.16|lactase-like
