mm39_v1_chr11_-_102255999_102256106	4.5459	Gli1	ENSMUST00000006749.10|Slc4a1|ENSMUSG00000006574.16|solute carrier family 4 (anion exchanger), member 1
mm39_v1_chr7_+_24069680_24069773	4.09549	Gli1	ENSMUST00000205428.2|Kcnn4|ENSMUSG00000054342.9|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	ENSMUST00000171904.3|Kcnn4|ENSMUSG00000054342.9|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	ENSMUST00000205626.2|Kcnn4|ENSMUSG00000054342.9|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm39_v1_chr10_+_79722081_79722153	3.89442	Gli1	ENSMUST00000046091.7|Elane|ENSMUSG00000020125.8|elastase, neutrophil expressed
mm39_v1_chr11_+_115790768_115790792	3.39303	Gli1	ENSMUST00000152171.8|Smim5|ENSMUSG00000048442.16|small integral membrane protein 5
mm39_v1_chr6_+_30738043_30738058	2.89882	Gli1	ENSMUST00000163949.9|Mest|ENSMUSG00000051855.16|mesoderm specific transcript	ENSMUST00000124665.3|Mest|ENSMUSG00000051855.16|mesoderm specific transcript
mm39_v1_chr2_+_157401998_157402050	2.88357	Gli1	ENSMUST00000153739.9|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173595.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000109526.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173839.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173041.8|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173793.8|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000172487.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000088484.6|Nnat|ENSMUSG00000067786.17|neuronatin
mm39_v1_chr9_+_106083988_106084003	2.79726	Gli1	ENSMUST00000188650.2|Twf2|ENSMUSG00000023277.14|twinfilin actin binding protein 2
mm39_v1_chr7_-_24459736_24459753	2.6323	Gli1	ENSMUST00000063956.7|Cd177|ENSMUSG00000052212.7|CD177 antigen
mm39_v1_chr11_+_72889889_72889929	2.55923	Gli1	ENSMUST00000021141.14|P2rx1|ENSMUSG00000020787.15|purinergic receptor P2X, ligand-gated ion channel, 1
mm39_v1_chr5_-_110987604_110987653	2.48819	Gli1	ENSMUST00000056937.12|Hscb|ENSMUSG00000043510.13|HscB iron-sulfur cluster co-chaperone
mm39_v1_chr2_-_152672535_152672600	2.45199	Gli1	ENSMUST00000146380.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000134902.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000134357.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000109820.5|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1
mm39_v1_chr4_-_133601990_133602042	2.38179	Gli1	ENSMUST00000168974.9|Rps6ka1|ENSMUSG00000003644.18|ribosomal protein S6 kinase polypeptide 1
mm39_v1_chr2_+_117942357_117942380	2.22261	Gli1	ENSMUST00000039559.9|Thbs1|ENSMUSG00000040152.9|thrombospondin 1
mm39_v1_chr1_-_133728779_133728805	2.12469	Gli1	ENSMUST00000143567.8|Atp2b4|ENSMUSG00000026463.18|ATPase, Ca++ transporting, plasma membrane 4
mm39_v1_chr6_+_113508636_113508682	1.92597	Gli1	ENSMUST00000036340.12|Fancd2|ENSMUSG00000034023.17|Fanconi anemia, complementation group D2	ENSMUST00000204827.3|Fancd2|ENSMUSG00000034023.17|Fanconi anemia, complementation group D2
mm39_v1_chr5_-_110987441_110987600	1.87366	Gli1	ENSMUST00000145318.2|Hscb|ENSMUSG00000043510.13|HscB iron-sulfur cluster co-chaperone
mm39_v1_chr2_+_29779750_29779929	1.87292	Gli1	ENSMUST00000113763.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113757.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113756.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000133233.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113759.9|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113755.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000137558.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000046571.14|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr5_-_115438971_115439003	1.85376	Gli1	ENSMUST00000112090.2|Dynll1|ENSMUSG00000009013.6|dynein light chain LC8-type 1
mm39_v1_chr18_-_35795233_35795255	1.8384	Gli1	ENSMUST00000025209.12|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24	ENSMUST00000096573.4|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24
mm39_v1_chr13_+_6598185_6598226	1.81743	Gli1	ENSMUST00000021611.10|Pitrm1|ENSMUSG00000021193.11|pitrilysin metallepetidase 1	ENSMUST00000222485.2|Pitrm1|ENSMUSG00000021193.11|pitrilysin metallepetidase 1
mm39_v1_chr15_-_103218876_103219039	1.80271	Gli1	ENSMUST00000079824.6|Gpr84|ENSMUSG00000063234.6|G protein-coupled receptor 84
mm39_v1_chr5_-_115439016_115439058	1.78139	Gli1	ENSMUST00000009157.4|Dynll1|ENSMUSG00000009013.6|dynein light chain LC8-type 1
mm39_v1_chr6_-_122587005_122587046	1.63789	Gli1	ENSMUST00000032211.5|Gdf3|ENSMUSG00000030117.6|growth differentiation factor 3
mm39_v1_chr3_+_95836558_95836611	1.62545	Gli1	ENSMUST00000165307.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	ENSMUST00000015893.13|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	ENSMUST00000169426.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm39_v1_chr4_+_154954042_154954093	1.51748	Gli1	ENSMUST00000079269.14|Mmel1|ENSMUSG00000058183.15|membrane metallo-endopeptidase-like 1	ENSMUST00000163732.8|Mmel1|ENSMUSG00000058183.15|membrane metallo-endopeptidase-like 1	ENSMUST00000080559.13|Mmel1|ENSMUSG00000058183.15|membrane metallo-endopeptidase-like 1
mm39_v1_chr3_+_95836637_95836698	1.5013	Gli1	ENSMUST00000171368.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	ENSMUST00000168106.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm39_v1_chr7_+_28682253_28682318	1.43474	Gli1	ENSMUST00000085835.8|Map4k1|ENSMUSG00000037337.12|mitogen-activated protein kinase kinase kinase kinase 1
mm39_v1_chr2_-_152673032_152673246	1.42395	Gli1	ENSMUST00000128172.3|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1
mm39_v1_chr18_-_35795175_35795228	1.35623	Gli1	ENSMUST00000236574.2|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24	ENSMUST00000236971.2|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24
mm39_v1_chr2_+_29780122_29780168	1.34412	Gli1	ENSMUST00000113762.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113765.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr17_+_34824827_34824862	1.26951	Gli1	ENSMUST00000037489.15|Agpat1|ENSMUSG00000034254.18|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
mm39_v1_chr15_-_100567377_100567411	1.24222	Gli1	ENSMUST00000182814.8|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000238935.2|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000182068.8|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000182574.2|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000182775.8|Bin2|ENSMUSG00000098112.9|bridging integrator 2
mm39_v1_chrX_+_139857640_139857673	1.1595	Gli1	ENSMUST00000112971.2|Atg4a|ENSMUSG00000079418.6|autophagy related 4A, cysteine peptidase
mm39_v1_chrX_+_158086253_158086277	1.1444	Gli1	ENSMUST00000112491.2|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chrX_+_139857688_139857703	1.13528	Gli1	ENSMUST00000239541.1|Atg4a|ENSMUSG00000079418.6|autophagy related 4A, cysteine peptidase
mm39_v1_chr19_-_46321218_46321231	1.07832	Gli1	ENSMUST00000238062.2|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2
mm39_v1_chr17_-_24428351_24428505	1.07309	Gli1	ENSMUST00000024931.6|Ntn3|ENSMUSG00000117406.2|netrin 3
mm39_v1_chr9_-_106762818_106762818	1.0423	Gli1	ENSMUST00000185707.2|Rbm15b|ENSMUSG00000074102.5|RNA binding motif protein 15B
mm39_v1_chr6_-_124410452_124410474	1.03655	Gli1	ENSMUST00000124998.2|Clstn3|ENSMUSG00000008153.13|calsyntenin 3	ENSMUST00000238807.2|Clstn3|ENSMUSG00000008153.13|calsyntenin 3
mm39_v1_chr6_-_67014348_67014376	0.99537	Gli1	ENSMUST00000204369.2|Gadd45a|ENSMUSG00000036390.9|growth arrest and DNA-damage-inducible 45 alpha
mm39_v1_chr4_-_45320579_45320634	0.990593	Gli1	ENSMUST00000030003.10|Exosc3|ENSMUSG00000028322.12|exosome component 3
mm39_v1_chr12_-_103304573_103304668	0.943177	Gli1	ENSMUST00000149431.2|Asb2|ENSMUSG00000021200.15|ankyrin repeat and SOCS box-containing 2
mm39_v1_chr6_-_67014191_67014235	0.910722	Gli1	ENSMUST00000204282.2|Gadd45a|ENSMUSG00000036390.9|growth arrest and DNA-damage-inducible 45 alpha
mm39_v1_chr6_+_28423539_28423629	0.906083	Gli1	ENSMUST00000020717.12|Arf5|ENSMUSG00000020440.14|ADP-ribosylation factor 5	ENSMUST00000169841.2|Arf5|ENSMUSG00000020440.14|ADP-ribosylation factor 5
mm39_v1_chr15_-_51855073_51855159	0.90357	Gli1	ENSMUST00000022927.11|Rad21|ENSMUSG00000022314.11|RAD21 cohesin complex component
mm39_v1_chr4_-_41275091_41275144	0.854936	Gli1	ENSMUST00000030143.13|Ubap2|ENSMUSG00000028433.15|ubiquitin-associated protein 2	ENSMUST00000108068.8|Ubap2|ENSMUSG00000028433.15|ubiquitin-associated protein 2
mm39_v1_chr2_+_29780532_29780557	0.837389	Gli1	ENSMUST00000113764.4|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr11_+_3239868_3239993	0.830067	Gli1	ENSMUST00000094471.10|Patz1|ENSMUSG00000020453.18|POZ (BTB) and AT hook containing zinc finger 1	ENSMUST00000110043.8|Patz1|ENSMUSG00000020453.18|POZ (BTB) and AT hook containing zinc finger 1
mm39_v1_chr3_-_94566107_94566185	0.810495	Gli1	ENSMUST00000196655.5|Tuft1|ENSMUSG00000005968.15|tuftelin 1	ENSMUST00000200407.2|Tuft1|ENSMUSG00000005968.15|tuftelin 1	ENSMUST00000006123.11|Tuft1|ENSMUSG00000005968.15|tuftelin 1	ENSMUST00000196733.5|Tuft1|ENSMUSG00000005968.15|tuftelin 1
mm39_v1_chr17_-_90217868_90217877	0.756082	Gli1	ENSMUST00000086423.6|Gm10184|ENSMUSG00000066878.6|predicted pseudogene 10184
mm39_v1_chr11_-_34724458_34724490	0.735252	Gli1	ENSMUST00000093191.3|Spdl1|ENSMUSG00000069910.3|spindle apparatus coiled-coil protein 1
mm39_v1_chr11_+_76900091_76900106	0.73392	Gli1	ENSMUST00000129572.3|Slc6a4|ENSMUSG00000020838.13|solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
mm39_v1_chr13_-_63579497_63579547	0.730731	Gli1	ENSMUST00000160931.2|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C	ENSMUST00000099444.10|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C	ENSMUST00000220684.2|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C	ENSMUST00000161977.8|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C	ENSMUST00000163091.8|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C
mm39_v1_chr14_-_54646917_54646934	0.727104	Gli1	ENSMUST00000000984.9|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm39_v1_chr4_+_118285275_118285392	0.72308	Gli1	ENSMUST00000006557.13|Elovl1|ENSMUSG00000006390.16|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	ENSMUST00000167636.8|Elovl1|ENSMUSG00000006390.16|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	ENSMUST00000102673.11|Elovl1|ENSMUSG00000006390.16|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm39_v1_chrX_+_154045439_154045454	0.717195	Gli1	ENSMUST00000026324.10|Acot9|ENSMUSG00000025287.16|acyl-CoA thioesterase 9
mm39_v1_chr11_-_83353787_83353897	0.706654	Gli1	ENSMUST00000021020.13|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)	ENSMUST00000119346.2|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)	ENSMUST00000103209.10|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)	ENSMUST00000108137.9|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)
mm39_v1_chr2_+_29780073_29780096	0.703429	Gli1	ENSMUST00000028128.13|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr5_-_110927803_110927833	0.699828	Gli1	ENSMUST00000112426.8|Pus1|ENSMUSG00000029507.17|pseudouridine synthase 1
mm39_v1_chr11_-_41891111_41891183	0.692534	Gli1	ENSMUST00000109290.2|Gabrg2|ENSMUSG00000020436.18|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm39_v1_chr2_+_84867554_84867649	0.688096	Gli1	ENSMUST00000077798.13|Ssrp1|ENSMUSG00000027067.17|structure specific recognition protein 1
mm39_v1_chr11_-_76289888_76290010	0.677754	Gli1	ENSMUST00000021204.4|Nxn|ENSMUSG00000020844.7|nucleoredoxin
mm39_v1_chr7_-_19504446_19504472	0.667762	Gli1	ENSMUST00000003061.14|Bcam|ENSMUSG00000002980.15|basal cell adhesion molecule
mm39_v1_chr16_-_90807983_90808001	0.63212	Gli1	ENSMUST00000170853.8|Synj1|ENSMUSG00000022973.19|synaptojanin 1	ENSMUST00000130813.3|Synj1|ENSMUSG00000022973.19|synaptojanin 1	ENSMUST00000118390.10|Synj1|ENSMUSG00000022973.19|synaptojanin 1
mm39_v1_chr2_-_91762033_91762069	0.628116	Gli1	ENSMUST00000111309.8|Mdk|ENSMUSG00000027239.15|midkine	ENSMUST00000090602.6|Mdk|ENSMUSG00000027239.15|midkine
mm39_v1_chr7_+_79836581_79836651	0.625103	Gli1	ENSMUST00000032754.9|Sema4b|ENSMUSG00000030539.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm39_v1_chr13_+_81931196_81931412	0.597997	Gli1	ENSMUST00000022009.10|Cetn3|ENSMUSG00000021537.10|centrin 3	ENSMUST00000223793.2|Cetn3|ENSMUSG00000021537.10|centrin 3
mm39_v1_chr2_-_91762119_91762141	0.586077	Gli1	ENSMUST00000069423.13|Mdk|ENSMUSG00000027239.15|midkine
mm39_v1_chr11_-_45846291_45846321	0.575151	Gli1	ENSMUST00000011398.13|Thg1l|ENSMUSG00000011254.17|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm39_v1_chr7_+_127845984_127846120	0.571557	Gli1	ENSMUST00000164710.8|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1	ENSMUST00000070656.12|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1
mm39_v1_chr7_+_127846121_127846165	0.567575	Gli1	ENSMUST00000167965.8|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1
mm39_v1_chr10_+_79613083_79613116	0.559097	Gli1	ENSMUST00000020575.5|Fstl3|ENSMUSG00000020325.11|follistatin-like 3
mm39_v1_chr2_+_152950388_152950462	0.542448	Gli1	ENSMUST00000189688.2|Hck|ENSMUSG00000003283.16|hemopoietic cell kinase	ENSMUST00000109799.8|Hck|ENSMUSG00000003283.16|hemopoietic cell kinase	ENSMUST00000003370.14|Hck|ENSMUSG00000003283.16|hemopoietic cell kinase
mm39_v1_chr19_-_6593049_6593068	0.538031	Gli1	ENSMUST00000113451.9|Slc22a12|ENSMUSG00000061742.13|solute carrier family 22 (organic anion/cation transporter), member 12
mm39_v1_chrX_-_139857424_139857477	0.522909	Gli1	ENSMUST00000033805.15|Psmd10|ENSMUSG00000031429.15|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	ENSMUST00000112978.2|Psmd10|ENSMUSG00000031429.15|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
mm39_v1_chr4_-_117539431_117539477	0.515744	Gli1	ENSMUST00000102687.4|Dmap1|ENSMUSG00000009640.12|DNA methyltransferase 1-associated protein 1
mm39_v1_chr6_-_148846247_148846324	0.481743	Gli1	ENSMUST00000111562.8|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000081956.12|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor
mm39_v1_chr5_-_123038329_123038438	0.46911	Gli1	ENSMUST00000031435.14|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr3_+_138058139_138058139	0.456621	Gli1	ENSMUST00000090166.5|Adh6b|ENSMUSG00000074206.8|alcohol dehydrogenase 6B (class V)
mm39_v1_chrX_-_58613428_58613454	0.454343	Gli1	ENSMUST00000119833.8|Fgf13|ENSMUSG00000031137.18|fibroblast growth factor 13	ENSMUST00000131319.8|Fgf13|ENSMUSG00000031137.18|fibroblast growth factor 13
mm39_v1_chr5_-_123127346_123127401	0.452523	Gli1	ENSMUST00000118027.8|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr1_+_133278248_133278248	0.445208	Gli1	ENSMUST00000094556.3|Ren1|ENSMUSG00000070645.6|renin 1 structural
mm39_v1_chr2_+_84867783_84867874	0.441971	Gli1	ENSMUST00000168266.8|Ssrp1|ENSMUSG00000027067.17|structure specific recognition protein 1	ENSMUST00000130729.3|Ssrp1|ENSMUSG00000027067.17|structure specific recognition protein 1
mm39_v1_chr7_-_110673269_110673456	0.433823	Gli1	ENSMUST00000163014.2|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2
mm39_v1_chr17_+_17669082_17669150	0.432657	Gli1	ENSMUST00000140134.2|Lix1|ENSMUSG00000047786.13|limb and CNS expressed 1
mm39_v1_chr12_-_69243871_69243893	0.421623	Gli1	ENSMUST00000223192.2|Gm49383|ENSMUSG00000113149.2|predicted gene, 49383
mm39_v1_chr11_-_45845992_45846020	0.413979	Gli1	ENSMUST00000109254.2|Thg1l|ENSMUSG00000011254.17|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm39_v1_chr8_+_121854566_121854679	0.410515	Gli1	ENSMUST00000181609.2|Foxl1|ENSMUSG00000097084.2|forkhead box L1
mm39_v1_chr2_+_106523532_106523624	0.406774	Gli1	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr3_-_92393193_92393208	0.405226	Gli1	ENSMUST00000054599.8|Sprr1a|ENSMUSG00000050359.8|small proline-rich protein 1A
mm39_v1_chr9_+_118335294_118335357	0.391608	Gli1	ENSMUST00000084820.6|Golga4|ENSMUSG00000038708.11|golgi autoantigen, golgin subfamily a, 4
mm39_v1_chr7_+_127084283_127084393	0.39054	Gli1	ENSMUST00000048896.8|Fbrs|ENSMUSG00000042423.10|fibrosin
mm39_v1_chr5_-_123859070_123859125	0.387368	Gli1	ENSMUST00000031376.12|Zcchc8|ENSMUSG00000029427.12|zinc finger, CCHC domain containing 8
mm39_v1_chr8_+_85763534_85763566	0.387241	Gli1	ENSMUST00000093360.12|Tnpo2|ENSMUSG00000031691.15|transportin 2 (importin 3, karyopherin beta 2b)
mm39_v1_chr7_+_27198740_27198756	0.366826	Gli1	ENSMUST00000098644.9|Prx|ENSMUSG00000053198.15|periaxin	ENSMUST00000108355.2|Prx|ENSMUSG00000053198.15|periaxin	ENSMUST00000238936.2|Prx|ENSMUSG00000053198.15|periaxin
mm39_v1_chr5_-_123859153_123859175	0.360075	Gli1	ENSMUST00000196282.5|Zcchc8|ENSMUSG00000029427.12|zinc finger, CCHC domain containing 8
mm39_v1_chrX_-_166165743_166165757	0.352186	Gli1	ENSMUST00000026839.5|Prps2|ENSMUSG00000025742.6|phosphoribosyl pyrophosphate synthetase 2
mm39_v1_chr15_-_56557920_56557950	0.351328	Gli1	ENSMUST00000050544.8|Has2|ENSMUSG00000022367.8|hyaluronan synthase 2
mm39_v1_chr10_-_63257568_63257568	0.345766	Gli1	ENSMUST00000054760.6|Gm7075|ENSMUSG00000048185.6|predicted gene 7075
mm39_v1_chr2_+_118865262_118865350	0.345057	Gli1	ENSMUST00000028796.2|Rpusd2|ENSMUSG00000027324.2|RNA pseudouridylate synthase domain containing 2
mm39_v1_chr11_-_78136767_78136813	0.344456	Gli1	ENSMUST00000002121.5|Supt6|ENSMUSG00000002052.7|SPT6, histone chaperone and transcription elongation factor
mm39_v1_chr4_-_40948196_40948296	0.341723	Gli1	ENSMUST00000030125.5|Bag1|ENSMUSG00000028416.14|BCL2-associated athanogene 1	ENSMUST00000108089.8|Bag1|ENSMUSG00000028416.14|BCL2-associated athanogene 1	ENSMUST00000191273.7|Bag1|ENSMUSG00000028416.14|BCL2-associated athanogene 1
mm39_v1_chr7_+_127865472_127865506	0.335761	Gli1	ENSMUST00000033045.11|Slc5a2|ENSMUSG00000030781.14|solute carrier family 5 (sodium/glucose cotransporter), member 2
mm39_v1_chr15_-_85466009_85466022	0.333247	Gli1	ENSMUST00000023015.15|Wnt7b|ENSMUSG00000022382.16|wingless-type MMTV integration site family, member 7B
mm39_v1_chr9_+_110134241_110134299	0.332408	Gli1	ENSMUST00000199592.5|Elp6|ENSMUSG00000054836.13|elongator acetyltransferase complex subunit 6	ENSMUST00000068071.12|Elp6|ENSMUSG00000054836.13|elongator acetyltransferase complex subunit 6
mm39_v1_chr10_+_22520910_22521008	0.329637	Gli1	ENSMUST00000042261.5|Slc2a12|ENSMUSG00000037490.6|solute carrier family 2 (facilitated glucose transporter), member 12
mm39_v1_chr2_+_181139016_181139037	0.326653	Gli1	ENSMUST00000108799.10|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2
mm39_v1_chr13_+_109822527_109822690	0.322964	Gli1	ENSMUST00000074103.12|Pde4d|ENSMUSG00000021699.18|phosphodiesterase 4D, cAMP specific
mm39_v1_chr4_-_82939330_82939372	0.321927	Gli1	ENSMUST00000071708.12|Frem1|ENSMUSG00000059049.15|Fras1 related extracellular matrix protein 1
mm39_v1_chr7_+_140796537_140796557	0.318098	Gli1	ENSMUST00000141804.2|Rassf7|ENSMUSG00000038618.13|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm39_v1_chr2_-_151815759_151815886	0.308398	Gli1	ENSMUST00000109865.8|Fam110a|ENSMUSG00000027459.17|family with sequence similarity 110, member A	ENSMUST00000109864.8|Fam110a|ENSMUSG00000027459.17|family with sequence similarity 110, member A
mm39_v1_chr19_+_11382092_11382139	0.301209	Gli1	ENSMUST00000153546.8|Ms4a4c|ENSMUSG00000024675.20|membrane-spanning 4-domains, subfamily A, member 4C
mm39_v1_chr2_+_181138958_181139009	0.2958	Gli1	ENSMUST00000149163.8|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000000844.15|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000184849.8|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000108800.8|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000069712.9|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2
mm39_v1_chr11_-_41891359_41891421	0.280499	Gli1	ENSMUST00000070735.10|Gabrg2|ENSMUSG00000020436.18|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm39_v1_chr12_+_17778198_17778227	0.279264	Gli1	ENSMUST00000222944.2|Hpcal1|ENSMUSG00000071379.3|hippocalcin-like 1
mm39_v1_chr11_+_101066867_101066867	0.274556	Gli1	ENSMUST00000103109.4|Cntnap1|ENSMUSG00000017167.7|contactin associated protein-like 1
mm39_v1_chr2_+_76200299_76200386	0.273223	Gli1	ENSMUST00000046389.5|Rbm45|ENSMUSG00000042369.9|RNA binding motif protein 45
mm39_v1_chr13_+_81931642_81931677	0.267317	Gli1	ENSMUST00000224574.2|Cetn3|ENSMUSG00000021537.10|centrin 3
mm39_v1_chr11_+_62737936_62737960	0.266511	Gli1	ENSMUST00000150989.8|Fbxw10|ENSMUSG00000090173.9|F-box and WD-40 domain protein 10	ENSMUST00000176577.2|Fbxw10|ENSMUSG00000090173.9|F-box and WD-40 domain protein 10
mm39_v1_chr11_+_78136569_78136646	0.264913	Gli1	ENSMUST00000002133.9|Sdf2|ENSMUSG00000002064.11|stromal cell derived factor 2
mm39_v1_chr8_-_33374825_33374944	0.261238	Gli1	ENSMUST00000238791.2|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr6_-_41613322_41613343	0.256191	Gli1	ENSMUST00000031902.7|Trpv6|ENSMUSG00000029868.15|transient receptor potential cation channel, subfamily V, member 6
mm39_v1_chr10_+_80084955_80084988	0.253275	Gli1	ENSMUST00000105364.8|Ndufs7|ENSMUSG00000020153.15|NADH:ubiquinone oxidoreductase core subunit S7
mm39_v1_chr18_-_70274639_70274693	0.250215	Gli1	ENSMUST00000121693.8|Rab27b|ENSMUSG00000024511.16|RAB27B, member RAS oncogene family
mm39_v1_chr11_+_62737887_62737913	0.248156	Gli1	ENSMUST00000036085.11|Fbxw10|ENSMUSG00000090173.9|F-box and WD-40 domain protein 10
mm39_v1_chr1_-_125839897_125839951	0.247043	Gli1	ENSMUST00000159417.2|Lypd1|ENSMUSG00000026344.10|Ly6/Plaur domain containing 1
mm39_v1_chr13_+_44882998_44883026	0.245334	Gli1	ENSMUST00000174068.8|Jarid2|ENSMUSG00000038518.16|jumonji, AT rich interactive domain 2
mm39_v1_chr7_-_137999434_137999516	0.242998	Gli1	ENSMUST00000160436.2|Tcerg1l|ENSMUSG00000091002.3|transcription elongation regulator 1-like
mm39_v1_chr8_+_70953766_70953826	0.235763	Gli1	ENSMUST00000127983.2|Crlf1|ENSMUSG00000007888.16|cytokine receptor-like factor 1
mm39_v1_chrX_-_58612709_58612832	0.233325	Gli1	ENSMUST00000124402.2|Fgf13|ENSMUSG00000031137.18|fibroblast growth factor 13
mm39_v1_chr3_+_90511068_90511084	0.222002	Gli1	ENSMUST00000001046.7|S100a4|ENSMUSG00000001020.9|S100 calcium binding protein A4
mm39_v1_chr4_+_114678919_114678919	0.217576	Gli1	ENSMUST00000137570.2|Gm12830|ENSMUSG00000055198.4|predicted gene 12830
mm39_v1_chr8_-_106692668_106692755	0.213526	Gli1	ENSMUST00000116429.9|Slc12a4|ENSMUSG00000017765.18|solute carrier family 12, member 4	ENSMUST00000034370.17|Slc12a4|ENSMUSG00000017765.18|solute carrier family 12, member 4
mm39_v1_chr6_-_52195663_52195696	0.21295	Gli1	ENSMUST00000134367.4|Hoxa7|ENSMUSG00000038236.9|homeobox A7
mm39_v1_chr8_-_33374282_33374329	0.207241	Gli1	ENSMUST00000209107.4|Nrg1|ENSMUSG00000062991.10|neuregulin 1	ENSMUST00000209022.3|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr13_-_114595475_114595493	0.206961	Gli1	ENSMUST00000022287.8|Fst|ENSMUSG00000021765.10|follistatin	ENSMUST00000223640.3|Fst|ENSMUSG00000021765.10|follistatin
mm39_v1_chr10_+_69369590_69369603	0.204967	Gli1	ENSMUST00000182884.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr1_+_129201081_129201206	0.20486	Gli1	ENSMUST00000073527.13|Thsd7b|ENSMUSG00000042581.15|thrombospondin, type I, domain containing 7B	ENSMUST00000040311.14|Thsd7b|ENSMUSG00000042581.15|thrombospondin, type I, domain containing 7B
mm39_v1_chr12_-_114117264_114117344	0.20421	Gli1	ENSMUST00000103461.5|Ighv7-3|ENSMUSG00000076652.5|immunoglobulin heavy variable 7-3
mm39_v1_chr3_+_88049875_88049892	0.204198	Gli1	ENSMUST00000107558.9|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D	ENSMUST00000107559.3|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D
mm39_v1_chr10_+_69369854_69369901	0.204022	Gli1	ENSMUST00000182557.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr2_+_121287444_121287614	0.198133	Gli1	ENSMUST00000126764.2|Hypk|ENSMUSG00000027245.12|huntingtin interacting protein K
mm39_v1_chr12_-_113561594_113561603	0.195906	Gli1	ENSMUST00000103444.3|Ighv5-4|ENSMUSG00000095612.3|immunoglobulin heavy variable 5-4
mm39_v1_chr2_-_59778560_59778594	0.194651	Gli1	ENSMUST00000153136.2|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr5_-_136275407_136275412	0.19335	Gli1	ENSMUST00000196245.2|Sh2b2|ENSMUSG00000005057.14|SH2B adaptor protein 2
mm39_v1_chr11_+_80191692_80191738	0.192215	Gli1	ENSMUST00000017836.8|Rhbdl3|ENSMUSG00000017692.9|rhomboid like 3
mm39_v1_chr10_-_63926044_63926076	0.190349	Gli1	ENSMUST00000105439.2|Lrrtm3|ENSMUSG00000042846.9|leucine rich repeat transmembrane neuronal 3
mm39_v1_chr7_-_66915756_66915910	0.189708	Gli1	ENSMUST00000207715.2|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A
mm39_v1_chr14_-_54647647_54647675	0.18699	Gli1	ENSMUST00000228488.2|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	ENSMUST00000195970.5|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm39_v1_chr12_-_70158348_70158403	0.182031	Gli1	ENSMUST00000220689.2|Nin|ENSMUSG00000021068.18|ninein
mm39_v1_chr9_-_96774719_96774740	0.180775	Gli1	ENSMUST00000154146.8|Pxylp1|ENSMUSG00000043587.16|2-phosphoxylose phosphatase 1
mm39_v1_chr6_-_52222776_52222806	0.173472	Gli1	ENSMUST00000048026.10|Hoxa11|ENSMUSG00000038210.11|homeobox A11
mm39_v1_chr2_+_154855451_154855481	0.171973	Gli1	ENSMUST00000029123.3|a|ENSMUSG00000027596.11|nonagouti
mm39_v1_chr7_-_3918484_3918502	0.170343	Gli1	ENSMUST00000038176.15|Lilra6|ENSMUSG00000030427.18|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	ENSMUST00000206077.2|Lilra6|ENSMUSG00000030427.18|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	ENSMUST00000090689.5|Lilra6|ENSMUSG00000030427.18|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
mm39_v1_chr2_+_26220403_26220453	0.165417	Gli1	ENSMUST00000114134.9|Gpsm1|ENSMUSG00000026930.16|G-protein signalling modulator 1 (AGS3-like, C. elegans)	ENSMUST00000127453.2|Gpsm1|ENSMUSG00000026930.16|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm39_v1_chr13_-_63579551_63579570	0.163757	Gli1	ENSMUST00000073029.13|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C
mm39_v1_chr9_+_113570506_113570551	0.160569	Gli1	ENSMUST00000213663.2|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2
mm39_v1_chr10_+_69369632_69369677	0.160172	Gli1	ENSMUST00000182155.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000183169.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000183148.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr12_-_113823290_113823320	0.159219	Gli1	ENSMUST00000103459.5|Ighv5-17|ENSMUSG00000095571.3|immunoglobulin heavy variable 5-17
mm39_v1_chr5_+_5623799_5623799	0.157197	Gli1	ENSMUST00000101627.5|Gm8773|ENSMUSG00000073234.5|predicted gene 8773
mm39_v1_chr10_+_69370038_69370052	0.154251	Gli1	ENSMUST00000182439.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000092434.12|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000047061.13|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000092432.12|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000092431.12|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000054167.15|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr3_+_88049633_88049790	0.151321	Gli1	ENSMUST00000001455.13|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D	ENSMUST00000119251.8|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D
mm39_v1_chr9_-_107482494_107482601	0.144172	Gli1	ENSMUST00000102529.10|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm39_v1_chr6_+_48603698_48603698	0.143474	Gli1	ENSMUST00000095938.10|AI854703|ENSMUSG00000053297.15|expressed sequence AI854703
mm39_v1_chr9_-_107482462_107482482	0.13975	Gli1	ENSMUST00000194433.6|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm39_v1_chr7_+_134870237_134870368	0.136786	Gli1	ENSMUST00000210697.2|Nps|ENSMUSG00000073804.6|neuropeptide S	ENSMUST00000097983.5|Nps|ENSMUSG00000073804.6|neuropeptide S
mm39_v1_chr6_-_51989456_51989531	0.13447	Gli1	ENSMUST00000078214.8|Skap2|ENSMUSG00000059182.9|src family associated phosphoprotein 2	ENSMUST00000204778.3|Skap2|ENSMUSG00000059182.9|src family associated phosphoprotein 2
mm39_v1_chrX_+_100342749_100342808	0.133822	Gli1	ENSMUST00000118111.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000130555.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000151528.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3
mm39_v1_chr18_+_37610858_37610888	0.130892	Gli1	ENSMUST00000051442.7|Pcdhb16|ENSMUSG00000047910.7|protocadherin beta 16
mm39_v1_chr11_-_58692770_58692793	0.129637	Gli1	ENSMUST00000094156.12|Fam183b|ENSMUSG00000049154.13|family with sequence similarity 183, member B	ENSMUST00000239007.2|Fam183b|ENSMUSG00000049154.13|family with sequence similarity 183, member B	ENSMUST00000238886.2|Fam183b|ENSMUSG00000049154.13|family with sequence similarity 183, member B	ENSMUST00000060581.5|Fam183b|ENSMUSG00000049154.13|family with sequence similarity 183, member B
mm39_v1_chr3_+_92195873_92195873	0.127923	Gli1	ENSMUST00000090872.7|Sprr2a3|ENSMUSG00000074445.5|small proline-rich protein 2A3
mm39_v1_chr14_-_40730180_40730232	0.119907	Gli1	ENSMUST00000136661.8|Prxl2a|ENSMUSG00000021792.16|peroxiredoxin like 2A
mm39_v1_chr10_+_80085275_80085306	0.119839	Gli1	ENSMUST00000020361.7|Ndufs7|ENSMUSG00000020153.15|NADH:ubiquinone oxidoreductase core subunit S7
mm39_v1_chr5_+_91222470_91222487	0.116966	Gli1	ENSMUST00000031324.6|Ereg|ENSMUSG00000029377.6|epiregulin
mm39_v1_chr17_-_57338468_57338538	0.116257	Gli1	ENSMUST00000007814.10|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein	ENSMUST00000233480.2|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein
mm39_v1_chr13_+_54722823_54722828	0.112182	Gli1	ENSMUST00000026988.11|Arl10|ENSMUSG00000025870.11|ADP-ribosylation factor-like 10
mm39_v1_chr18_+_61820982_61821006	0.1026	Gli1	ENSMUST00000025471.4|Il17b|ENSMUSG00000024578.4|interleukin 17B
mm39_v1_chr11_-_69435382_69435382	0.0999603	Gli1	ENSMUST00000035539.12|Dnah2|ENSMUSG00000005237.15|dynein, axonemal, heavy chain 2
mm39_v1_chr7_-_142453722_142453751	0.0987949	Gli1	ENSMUST00000000219.10|Th|ENSMUSG00000000214.12|tyrosine hydroxylase
mm39_v1_chr9_+_113570580_113570592	0.0984556	Gli1	ENSMUST00000216817.2|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2
mm39_v1_chr10_-_98962187_98962187	0.0930371	Gli1	ENSMUST00000060761.7|Phxr2|ENSMUSG00000055108.7|per-hexamer repeat gene 2
mm39_v1_chr12_-_113625906_113625929	0.0899016	Gli1	ENSMUST00000103448.3|Ighv5-9|ENSMUSG00000095285.3|immunoglobulin heavy variable 5-9
mm39_v1_chr2_+_164721277_164721318	0.0837465	Gli1	ENSMUST00000041643.5|Pcif1|ENSMUSG00000039849.7|phosphorylated CTD interacting factor 1
mm39_v1_chr7_-_6334239_6334290	0.0836306	Gli1	ENSMUST00000127658.2|Zfp583|ENSMUSG00000030443.17|zinc finger protein 583	ENSMUST00000062765.14|Zfp583|ENSMUSG00000030443.17|zinc finger protein 583
mm39_v1_chr16_-_4376471_4376647	0.0824694	Gli1	ENSMUST00000230875.2|Tfap4|ENSMUSG00000005718.9|transcription factor AP4
mm39_v1_chr16_-_19703014_19703035	0.0815334	Gli1	ENSMUST00000100083.5|A930003A15Rik|ENSMUSG00000075330.5|RIKEN cDNA A930003A15 gene	ENSMUST00000231564.2|A930003A15Rik|ENSMUSG00000075330.5|RIKEN cDNA A930003A15 gene
mm39_v1_chr13_+_54722833_54722906	0.0811669	Gli1	ENSMUST00000156024.2|Arl10|ENSMUSG00000025870.11|ADP-ribosylation factor-like 10
mm39_v1_chr13_-_114595122_114595272	0.080568	Gli1	ENSMUST00000231252.2|Fst|ENSMUSG00000021765.10|follistatin
mm39_v1_chr15_-_101848689_101848759	0.0799848	Gli1	ENSMUST00000023799.8|Krt79|ENSMUSG00000061397.9|keratin 79
mm39_v1_chr9_-_50663571_50663638	0.0796492	Gli1	ENSMUST00000042790.5|Hspb2|ENSMUSG00000038086.5|heat shock protein 2
mm39_v1_chr9_+_107805647_107805684	0.0765758	Gli1	ENSMUST00000085073.2|Actl11|ENSMUSG00000066368.2|actin-like 11
mm39_v1_chr2_-_89623963_89623963	0.0745069	Gli1	ENSMUST00000216587.2|Olfr1254|ENSMUSG00000075074.4|olfactory receptor 1254	ENSMUST00000111523.3|Olfr1254|ENSMUSG00000075074.4|olfactory receptor 1254
mm39_v1_chr17_-_46044768_46044801	0.0701099	Gli1	ENSMUST00000178179.2|1600014C23Rik|ENSMUSG00000094690.3|RIKEN cDNA 1600014C23 gene
mm39_v1_chrX_+_118836893_118836922	0.0698107	Gli1	ENSMUST00000040961.3|Pabpc5|ENSMUSG00000034732.5|poly(A) binding protein, cytoplasmic 5	ENSMUST00000113366.2|Pabpc5|ENSMUSG00000034732.5|poly(A) binding protein, cytoplasmic 5
mm39_v1_chr4_+_127881786_127881848	0.0689801	Gli1	ENSMUST00000184063.3|Csmd2|ENSMUSG00000028804.21|CUB and Sushi multiple domains 2
mm39_v1_chr5_-_123185073_123185084	0.0677275	Gli1	ENSMUST00000031437.14|Morn3|ENSMUSG00000029477.15|MORN repeat containing 3
mm39_v1_chr12_-_113945961_113945961	0.0545938	Gli1	ENSMUST00000103466.2|Ighv11-1|ENSMUSG00000094533.2|immunoglobulin heavy variable 11-1
mm39_v1_chr12_+_44375665_44375740	0.0543734	Gli1	ENSMUST00000110748.4|Nrcam|ENSMUSG00000020598.17|neuronal cell adhesion molecule
mm39_v1_chr16_+_92295009_92295063	0.0527864	Gli1	ENSMUST00000023670.4|Clic6|ENSMUSG00000022949.10|chloride intracellular channel 6
mm39_v1_chr1_-_25267894_25267916	0.0525855	Gli1	ENSMUST00000126626.8|Adgrb3|ENSMUSG00000033569.18|adhesion G protein-coupled receptor B3
mm39_v1_chr19_-_42740898_42740959	0.0524684	Gli1	ENSMUST00000237747.2|Pyroxd2|ENSMUSG00000060224.5|pyridine nucleotide-disulphide oxidoreductase domain 2
mm39_v1_chr12_+_84363603_84363650	0.0502558	Gli1	ENSMUST00000045931.12|Zfp410|ENSMUSG00000042472.12|zinc finger protein 410
mm39_v1_chr2_+_154855350_154855392	0.0497261	Gli1	ENSMUST00000148402.8|a|ENSMUSG00000027596.11|nonagouti
mm39_v1_chr5_+_94226027_94226061	0.0487668	Gli1	ENSMUST00000139828.2|Gm6351|ENSMUSG00000072821.5|predicted gene 6351	ENSMUST00000101021.4|Gm6351|ENSMUSG00000072821.5|predicted gene 6351
mm39_v1_chr5_+_3391477_3391488	0.0485263	Gli1	ENSMUST00000199156.2|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6
mm39_v1_chr1_-_155108455_155108486	0.0437698	Gli1	ENSMUST00000035914.5|BC034090|ENSMUSG00000033722.10|cDNA sequence BC034090
mm39_v1_chr12_+_44375747_44375845	0.0406389	Gli1	ENSMUST00000020939.16|Nrcam|ENSMUSG00000020598.17|neuronal cell adhesion molecule	ENSMUST00000220126.2|Nrcam|ENSMUSG00000020598.17|neuronal cell adhesion molecule
mm39_v1_chrX_+_135950334_135950415	0.0378322	Gli1	ENSMUST00000047852.8|Fam199x|ENSMUSG00000042595.8|family with sequence similarity 199, X-linked
mm39_v1_chr9_-_54568950_54569001	0.034024	Gli1	ENSMUST00000128624.2|Acsbg1|ENSMUSG00000032281.12|acyl-CoA synthetase bubblegum family member 1
mm39_v1_chr14_+_19801333_19801360	0.0327296	Gli1	ENSMUST00000022340.5|Nid2|ENSMUSG00000021806.5|nidogen 2
mm39_v1_chr10_-_128727542_128727587	0.0292869	Gli1	ENSMUST00000026408.7|Gdf11|ENSMUSG00000025352.7|growth differentiation factor 11
mm39_v1_chrX_+_100342813_100342824	0.0281505	Gli1	ENSMUST00000065858.3|Nlgn3|ENSMUSG00000031302.17|neuroligin 3
mm39_v1_chr1_-_64160557_64160650	0.0256687	Gli1	ENSMUST00000055001.10|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)	ENSMUST00000114086.8|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr18_-_43506277_43506339	0.0252047	Gli1	ENSMUST00000118043.8|Dpysl3|ENSMUSG00000024501.21|dihydropyrimidinase-like 3
mm39_v1_chr12_-_113294138_113294149	0.0249796	Gli1	ENSMUST00000194304.6|Ighg1|ENSMUSG00000076614.8|immunoglobulin heavy constant gamma 1 (G1m marker)	ENSMUST00000103420.3|Ighg1|ENSMUSG00000076614.8|immunoglobulin heavy constant gamma 1 (G1m marker)
mm39_v1_chr12_-_81379903_81379994	0.0241785	Gli1	ENSMUST00000085238.13|Slc8a3|ENSMUSG00000079055.11|solute carrier family 8 (sodium/calcium exchanger), member 3	ENSMUST00000182208.8|Slc8a3|ENSMUSG00000079055.11|solute carrier family 8 (sodium/calcium exchanger), member 3
mm39_v1_chr19_-_5135510_5135559	0.0239425	Gli1	ENSMUST00000140389.8|Tmem151a|ENSMUSG00000061451.14|transmembrane protein 151A	ENSMUST00000151413.2|Tmem151a|ENSMUSG00000061451.14|transmembrane protein 151A	ENSMUST00000077066.8|Tmem151a|ENSMUSG00000061451.14|transmembrane protein 151A
mm39_v1_chr15_+_101013704_101013712	0.0227264	Gli1	ENSMUST00000229954.2|Ankrd33|ENSMUSG00000047034.11|ankyrin repeat domain 33
mm39_v1_chr7_+_73040908_73041044	0.0140227	Gli1	ENSMUST00000128471.2|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A	ENSMUST00000139780.3|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A
mm39_v1_chr8_+_55407872_55407889	0.0117772	Gli1	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr6_-_28830344_28830344	0.0117752	Gli1	ENSMUST00000171353.2|Lrrc4|ENSMUSG00000049939.7|leucine rich repeat containing 4
mm39_v1_chr7_-_118042772_118042792	0.00999607	Gli1	ENSMUST00000081574.8|Syt17|ENSMUSG00000058420.9|synaptotagmin XVII
mm39_v1_chrX_+_102365004_102365004	0.0098894	Gli1	ENSMUST00000033689.3|Cdx4|ENSMUSG00000031326.3|caudal type homeobox 4
mm39_v1_chr4_+_154921916_154921916	0.00520469	Gli1	ENSMUST00000207854.2|Ttc34|ENSMUSG00000046637.4|tetratricopeptide repeat domain 34
mm39_v1_chr4_+_12089373_12089441	0.000936377	Gli1	ENSMUST00000095143.9|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2	ENSMUST00000063839.6|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2
