mm39_v1_chr1_-_45542442_45542442	10.3718	Hoxd11_Cdx1_Hoxc11	ENSMUST00000086430.5|Col5a2|ENSMUSG00000026042.17|collagen, type V, alpha 2
mm39_v1_chr7_-_142215595_142215617	7.19889	Hoxd11_Cdx1_Hoxc11	ENSMUST00000145896.3|Igf2|ENSMUSG00000048583.17|insulin-like growth factor 2
mm39_v1_chr17_-_31363245_31363262	6.2114	Hoxd11_Cdx1_Hoxc11	ENSMUST00000024826.8|Tff2|ENSMUSG00000024028.8|trefoil factor 2 (spasmolytic protein 1)
mm39_v1_chr13_-_24098981_24098995	3.27032	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110407.4|Slc17a4|ENSMUSG00000021336.18|solute carrier family 17 (sodium phosphate), member 4
mm39_v1_chr13_-_24098951_24098972	3.11019	Hoxd11_Cdx1_Hoxc11	ENSMUST00000021769.16|Slc17a4|ENSMUSG00000021336.18|solute carrier family 17 (sodium phosphate), member 4
mm39_v1_chr4_-_141553306_141553471	2.99117	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102481.4|Cela2a|ENSMUSG00000058579.6|chymotrypsin-like elastase family, member 2A
mm39_v1_chr13_+_13612136_13612136	2.76825	Hoxd11_Cdx1_Hoxc11	ENSMUST00000005532.9|Nid1|ENSMUSG00000005397.9|nidogen 1
mm39_v1_chr1_-_71692320_71692359	2.54575	Hoxd11_Cdx1_Hoxc11	ENSMUST00000186940.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000188894.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000188674.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000189821.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000187938.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000190780.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000186736.2|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000055226.13|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000186129.7|Fn1|ENSMUSG00000026193.16|fibronectin 1
mm39_v1_chr7_+_140343652_140343758	2.49524	Hoxd11_Cdx1_Hoxc11	ENSMUST00000026552.9|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1	ENSMUST00000209253.2|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1	ENSMUST00000210235.2|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1
mm39_v1_chr2_+_84818538_84818559	2.33617	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028466.12|Prg3|ENSMUSG00000027072.14|proteoglycan 3
mm39_v1_chr4_-_133695264_133695317	2.04981	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102553.11|Hmgn2|ENSMUSG00000003038.16|high mobility group nucleosomal binding domain 2
mm39_v1_chr13_+_25127127_25127146	1.87762	Hoxd11_Cdx1_Hoxc11	ENSMUST00000021773.13|Gpld1|ENSMUSG00000021340.14|glycosylphosphatidylinositol specific phospholipase D1
mm39_v1_chr2_-_32341408_32341472	1.7227	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028160.15|Slc25a25|ENSMUSG00000026819.16|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	ENSMUST00000113310.9|Slc25a25|ENSMUSG00000026819.16|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm39_v1_chr15_+_81820954_81821038	1.63718	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038757.8|Csdc2|ENSMUSG00000042109.9|cold shock domain containing C2, RNA binding	ENSMUST00000230633.2|Csdc2|ENSMUSG00000042109.9|cold shock domain containing C2, RNA binding
mm39_v1_chr11_-_120440519_120440554	1.5615	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034913.5|Mcrip1|ENSMUSG00000061111.9|MAPK regulated corepressor interacting protein 1
mm39_v1_chr6_-_87958611_87958626	1.53868	Hoxd11_Cdx1_Hoxc11	ENSMUST00000056403.7|H1f10|ENSMUSG00000044927.7|H1.10 linker histone
mm39_v1_chr11_-_100036792_100036946	1.36853	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007317.8|Krt19|ENSMUSG00000020911.15|keratin 19
mm39_v1_chr8_+_57774010_57774027	1.36651	Hoxd11_Cdx1_Hoxc11	ENSMUST00000040104.5|Hand2|ENSMUSG00000038193.5|heart and neural crest derivatives expressed 2
mm39_v1_chr19_+_53517528_53517545	1.34735	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038287.7|Dusp5|ENSMUSG00000034765.7|dual specificity phosphatase 5
mm39_v1_chr2_-_151586063_151586125	1.27085	Hoxd11_Cdx1_Hoxc11	ENSMUST00000109869.2|Psmf1|ENSMUSG00000032869.16|proteasome (prosome, macropain) inhibitor subunit 1
mm39_v1_chr19_+_58748132_58748177	1.2401	Hoxd11_Cdx1_Hoxc11	ENSMUST00000026081.5|Pnliprp2|ENSMUSG00000025091.5|pancreatic lipase-related protein 2
mm39_v1_chr7_+_130633776_130633806	1.23577	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084509.7|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1	ENSMUST00000213064.3|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1	ENSMUST00000208311.4|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1
mm39_v1_chr19_-_7943365_7943401	1.23048	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182102.8|Slc22a27|ENSMUSG00000067656.14|solute carrier family 22, member 27	ENSMUST00000075619.5|Slc22a27|ENSMUSG00000067656.14|solute carrier family 22, member 27
mm39_v1_chr4_-_49408040_49408151	1.20113	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081541.9|Acnat2|ENSMUSG00000060317.10|acyl-coenzyme A amino acid N-acyltransferase 2
mm39_v1_chr3_+_57332735_57332873	1.19836	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029377.8|Tm4sf4|ENSMUSG00000027801.8|transmembrane 4 superfamily member 4
mm39_v1_chr6_+_125529911_125529943	1.14159	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112254.8|Vwf|ENSMUSG00000001930.18|Von Willebrand factor	ENSMUST00000112253.6|Vwf|ENSMUSG00000001930.18|Von Willebrand factor
mm39_v1_chr14_+_76741625_76741691	1.14047	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177207.2|Tsc22d1|ENSMUSG00000022010.20|TSC22 domain family, member 1
mm39_v1_chr8_-_106670014_106670039	1.13903	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038896.8|Lcat|ENSMUSG00000035237.8|lecithin cholesterol acyltransferase
mm39_v1_chr5_+_90708962_90709076	1.12111	Hoxd11_Cdx1_Hoxc11	ENSMUST00000094615.8|Albfm1|ENSMUSG00000070690.8|albumin superfamily member 1	ENSMUST00000200765.2|Albfm1|ENSMUSG00000070690.8|albumin superfamily member 1
mm39_v1_chr4_+_95467653_95467665	1.10335	Hoxd11_Cdx1_Hoxc11	ENSMUST00000043335.11|Fggy|ENSMUSG00000028573.19|FGGY carbohydrate kinase domain containing
mm39_v1_chr2_-_32278245_32278268	1.08802	Hoxd11_Cdx1_Hoxc11	ENSMUST00000192241.2|Lcn2|ENSMUSG00000026822.15|lipocalin 2
mm39_v1_chr11_-_99134885_99134964	1.07108	Hoxd11_Cdx1_Hoxc11	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr3_-_144466602_144466628	1.06679	Hoxd11_Cdx1_Hoxc11	ENSMUST00000059091.6|Clca3a1|ENSMUSG00000056025.13|chloride channel accessory 3A1
mm39_v1_chr2_-_160208977_160208993	1.05057	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099126.5|Mafb|ENSMUSG00000074622.5|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm39_v1_chr11_+_87457479_87457488	1.01777	Hoxd11_Cdx1_Hoxc11	ENSMUST00000239011.2|Septin4|ENSMUSG00000020486.20|septin 4
mm39_v1_chr4_+_118217179_118217227	1.01539	Hoxd11_Cdx1_Hoxc11	ENSMUST00000006562.6|Hyi|ENSMUSG00000006395.17|hydroxypyruvate isomerase (putative)
mm39_v1_chr2_-_32277773_32277809	1.00429	Hoxd11_Cdx1_Hoxc11	ENSMUST00000050785.14|Lcn2|ENSMUSG00000026822.15|lipocalin 2
mm39_v1_chr3_-_122828592_122828664	1.00213	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029761.14|Myoz2|ENSMUSG00000028116.14|myozenin 2
mm39_v1_chr4_-_133695204_133695263	0.923749	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100472.10|Hmgn2|ENSMUSG00000003038.16|high mobility group nucleosomal binding domain 2	ENSMUST00000136327.2|Hmgn2|ENSMUSG00000003038.16|high mobility group nucleosomal binding domain 2
mm39_v1_chr5_-_25305621_25305655	0.919566	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030784.14|Prkag2|ENSMUSG00000028944.15|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm39_v1_chr6_-_83513222_83513252	0.911682	Hoxd11_Cdx1_Hoxc11	ENSMUST00000075161.12|Actg2|ENSMUSG00000059430.15|actin, gamma 2, smooth muscle, enteric
mm39_v1_chr1_+_45350698_45350798	0.885704	Hoxd11_Cdx1_Hoxc11	ENSMUST00000087883.13|Col3a1|ENSMUSG00000026043.19|collagen, type III, alpha 1
mm39_v1_chr17_-_71305003_71305049	0.870536	Hoxd11_Cdx1_Hoxc11	ENSMUST00000024846.13|Myl12a|ENSMUSG00000024048.16|myosin, light chain 12A, regulatory, non-sarcomeric	ENSMUST00000232766.2|Myl12a|ENSMUSG00000024048.16|myosin, light chain 12A, regulatory, non-sarcomeric
mm39_v1_chr4_+_95467701_95467736	0.863497	Hoxd11_Cdx1_Hoxc11	ENSMUST00000150830.2|Fggy|ENSMUSG00000028573.19|FGGY carbohydrate kinase domain containing	ENSMUST00000134012.9|Fggy|ENSMUSG00000028573.19|FGGY carbohydrate kinase domain containing
mm39_v1_chr7_-_119058489_119058508	0.812549	Hoxd11_Cdx1_Hoxc11	ENSMUST00000207887.3|Gp2|ENSMUSG00000030954.12|glycoprotein 2 (zymogen granule membrane)	ENSMUST00000239424.2|Gp2|ENSMUSG00000030954.12|glycoprotein 2 (zymogen granule membrane)	ENSMUST00000033255.8|Gp2|ENSMUSG00000030954.12|glycoprotein 2 (zymogen granule membrane)
mm39_v1_chr2_+_36120438_36120557	0.808373	Hoxd11_Cdx1_Hoxc11	ENSMUST00000062069.6|Ptgs1|ENSMUSG00000047250.14|prostaglandin-endoperoxide synthase 1
mm39_v1_chr7_-_141015240_141015310	0.769015	Hoxd11_Cdx1_Hoxc11	ENSMUST00000138865.8|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm39_v1_chr2_+_28095660_28095684	0.765143	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102879.4|Olfm1|ENSMUSG00000026833.19|olfactomedin 1	ENSMUST00000028177.11|Olfm1|ENSMUSG00000026833.19|olfactomedin 1
mm39_v1_chr3_-_49711765_49711772	0.744044	Hoxd11_Cdx1_Hoxc11	ENSMUST00000035931.13|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr3_-_49711706_49711758	0.73865	Hoxd11_Cdx1_Hoxc11	ENSMUST00000191794.2|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr4_+_5724305_5724357	0.703305	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108380.2|Fam110b|ENSMUSG00000049119.15|family with sequence similarity 110, member B
mm39_v1_chr8_+_110717062_110717138	0.683779	Hoxd11_Cdx1_Hoxc11	ENSMUST00000001720.14|Tat|ENSMUSG00000001670.14|tyrosine aminotransferase	ENSMUST00000143741.2|Tat|ENSMUSG00000001670.14|tyrosine aminotransferase
mm39_v1_chr3_-_10273628_10273646	0.648177	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029041.6|Fabp4|ENSMUSG00000062515.4|fatty acid binding protein 4, adipocyte
mm39_v1_chr17_+_8502594_8502661	0.638534	Hoxd11_Cdx1_Hoxc11	ENSMUST00000155364.8|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1	ENSMUST00000046754.15|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1
mm39_v1_chr17_+_8502682_8502693	0.635349	Hoxd11_Cdx1_Hoxc11	ENSMUST00000124023.8|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1
mm39_v1_chr8_-_45747883_45747901	0.616031	Hoxd11_Cdx1_Hoxc11	ENSMUST00000026907.6|Klkb1|ENSMUSG00000109764.2|kallikrein B, plasma 1
mm39_v1_chr19_+_26725589_26725932	0.615819	Hoxd11_Cdx1_Hoxc11	ENSMUST00000207812.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000175791.9|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000207118.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000209085.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000112637.10|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000207054.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000208589.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000176475.9|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000176698.9|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000207832.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000177252.9|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000208712.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000208186.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000208806.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000208027.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm39_v1_chr4_+_102427247_102427306	0.603213	Hoxd11_Cdx1_Hoxc11	ENSMUST00000097950.9|Pde4b|ENSMUSG00000028525.17|phosphodiesterase 4B, cAMP specific
mm39_v1_chr4_-_63965161_63965252	0.602808	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107377.10|Tnc|ENSMUSG00000028364.16|tenascin C
mm39_v1_chr10_+_4561974_4562075	0.601545	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105590.8|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)	ENSMUST00000067086.14|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)
mm39_v1_chr17_+_71326510_71326517	0.595081	Hoxd11_Cdx1_Hoxc11	ENSMUST00000073211.13|Myom1|ENSMUSG00000024049.16|myomesin 1	ENSMUST00000024847.14|Myom1|ENSMUSG00000024049.16|myomesin 1
mm39_v1_chr7_-_141014477_141014517	0.593643	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106007.10|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000150026.2|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000202840.4|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000133206.9|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm39_v1_chr8_-_25528972_25528986	0.59029	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084031.6|Htra4|ENSMUSG00000037406.8|HtrA serine peptidase 4
mm39_v1_chr6_-_83513184_83513213	0.587488	Hoxd11_Cdx1_Hoxc11	ENSMUST00000205926.2|Actg2|ENSMUSG00000059430.15|actin, gamma 2, smooth muscle, enteric
mm39_v1_chr7_+_119206233_119206256	0.557721	Hoxd11_Cdx1_Hoxc11	ENSMUST00000126367.8|Acsm1|ENSMUSG00000033533.15|acyl-CoA synthetase medium-chain family member 1
mm39_v1_chrX_+_55824797_55824925	0.547195	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114773.10|Fhl1|ENSMUSG00000023092.17|four and a half LIM domains 1
mm39_v1_chrX_+_105964224_105964239	0.536055	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060576.8|Lpar4|ENSMUSG00000049929.8|lysophosphatidic acid receptor 4
mm39_v1_chrX_+_95498965_95499017	0.523388	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033553.14|Heph|ENSMUSG00000031209.15|hephaestin
mm39_v1_chr7_+_127399776_127399787	0.517338	Hoxd11_Cdx1_Hoxc11	ENSMUST00000046863.12|Hsd3b7|ENSMUSG00000042289.12|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	ENSMUST00000206674.2|Hsd3b7|ENSMUSG00000042289.12|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	ENSMUST00000106272.8|Hsd3b7|ENSMUSG00000042289.12|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm39_v1_chrX_-_133442596_133442649	0.515471	Hoxd11_Cdx1_Hoxc11	ENSMUST00000054213.5|Timm8a1|ENSMUSG00000048007.5|translocase of inner mitochondrial membrane 8A1
mm39_v1_chr14_+_20724378_20724497	0.505655	Hoxd11_Cdx1_Hoxc11	ENSMUST00000224492.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)	ENSMUST00000223751.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)	ENSMUST00000225108.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)	ENSMUST00000224754.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)
mm39_v1_chr6_-_97594498_97594558	0.505087	Hoxd11_Cdx1_Hoxc11	ENSMUST00000113355.9|Frmd4b|ENSMUSG00000030064.17|FERM domain containing 4B
mm39_v1_chr19_+_42034231_42034336	0.500254	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172244.8|Hoga1|ENSMUSG00000025176.15|4-hydroxy-2-oxoglutarate aldolase 1	ENSMUST00000081714.5|Hoga1|ENSMUSG00000025176.15|4-hydroxy-2-oxoglutarate aldolase 1
mm39_v1_chr13_+_19398273_19398273	0.494334	Hoxd11_Cdx1_Hoxc11	ENSMUST00000103558.3|Trgc1|ENSMUSG00000076749.3|T cell receptor gamma, constant 1
mm39_v1_chr3_-_89257266_89257308	0.488697	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107446.8|Adam15|ENSMUSG00000028041.18|a disintegrin and metallopeptidase domain 15 (metargidin)	ENSMUST00000074582.7|Adam15|ENSMUSG00000028041.18|a disintegrin and metallopeptidase domain 15 (metargidin)	ENSMUST00000107448.9|Adam15|ENSMUSG00000028041.18|a disintegrin and metallopeptidase domain 15 (metargidin)	ENSMUST00000029676.12|Adam15|ENSMUSG00000028041.18|a disintegrin and metallopeptidase domain 15 (metargidin)
mm39_v1_chr9_+_89081262_89081400	0.48437	Hoxd11_Cdx1_Hoxc11	ENSMUST00000068569.5|Bcl2a1b|ENSMUSG00000089929.2|B cell leukemia/lymphoma 2 related protein A1b
mm39_v1_chr14_-_47426863_47426877	0.483526	Hoxd11_Cdx1_Hoxc11	ENSMUST00000089959.7|Gch1|ENSMUSG00000037580.11|GTP cyclohydrolase 1
mm39_v1_chr15_+_6451721_6451813	0.481628	Hoxd11_Cdx1_Hoxc11	ENSMUST00000163082.2|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein
mm39_v1_chr2_-_27354006_27354128	0.473419	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164296.8|Brd3|ENSMUSG00000026918.17|bromodomain containing 3
mm39_v1_chr18_-_35631914_35631982	0.461429	Hoxd11_Cdx1_Hoxc11	ENSMUST00000236007.2|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	ENSMUST00000237896.2|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	ENSMUST00000235778.2|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	ENSMUST00000235524.2|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	ENSMUST00000235691.2|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	ENSMUST00000235619.2|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	ENSMUST00000025215.10|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
mm39_v1_chr15_-_78739717_78739736	0.460873	Hoxd11_Cdx1_Hoxc11	ENSMUST00000044584.6|Lgals2|ENSMUSG00000043501.6|lectin, galactose-binding, soluble 2
mm39_v1_chr10_+_116137277_116137333	0.455634	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092167.7|Ptprb|ENSMUSG00000020154.11|protein tyrosine phosphatase, receptor type, B
mm39_v1_chr17_-_43813664_43813703	0.449004	Hoxd11_Cdx1_Hoxc11	ENSMUST00000024707.9|Mep1a|ENSMUSG00000023914.17|meprin 1 alpha	ENSMUST00000117137.8|Mep1a|ENSMUSG00000023914.17|meprin 1 alpha
mm39_v1_chr7_-_29605504_29605562	0.437049	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053521.15|Zfp27|ENSMUSG00000062040.15|zinc finger protein 27
mm39_v1_chr13_+_93810911_93810959	0.423336	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048001.8|Dmgdh|ENSMUSG00000042102.8|dimethylglycine dehydrogenase precursor
mm39_v1_chr6_+_15196950_15197041	0.421463	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140557.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000131414.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000115469.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr6_-_116650751_116650913	0.419733	Hoxd11_Cdx1_Hoxc11	ENSMUST00000204576.2|Rassf4|ENSMUSG00000042129.9|Ras association (RalGDS/AF-6) domain family member 4	ENSMUST00000203029.3|Rassf4|ENSMUSG00000042129.9|Ras association (RalGDS/AF-6) domain family member 4	ENSMUST00000035842.7|Rassf4|ENSMUSG00000042129.9|Ras association (RalGDS/AF-6) domain family member 4
mm39_v1_chr17_+_35278011_35278113	0.414224	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007255.13|Ddah2|ENSMUSG00000007039.13|dimethylarginine dimethylaminohydrolase 2	ENSMUST00000174493.8|Ddah2|ENSMUSG00000007039.13|dimethylarginine dimethylaminohydrolase 2
mm39_v1_chr4_-_136329953_136330071	0.412241	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105847.8|Kdm1a|ENSMUSG00000036940.16|lysine (K)-specific demethylase 1A	ENSMUST00000116273.9|Kdm1a|ENSMUSG00000036940.16|lysine (K)-specific demethylase 1A
mm39_v1_chr19_-_47452840_47452894	0.410953	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081619.10|Sh3pxd2a|ENSMUSG00000053617.13|SH3 and PX domains 2A
mm39_v1_chr5_+_63969706_63969891	0.403322	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081747.8|0610040J01Rik|ENSMUSG00000060512.8|RIKEN cDNA 0610040J01 gene	ENSMUST00000196575.5|0610040J01Rik|ENSMUSG00000060512.8|RIKEN cDNA 0610040J01 gene
mm39_v1_chr16_+_29884153_29884169	0.397782	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023171.8|Hes1|ENSMUSG00000022528.9|hes family bHLH transcription factor 1
mm39_v1_chrX_+_140258381_140258464	0.394526	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112931.8|Col4a5|ENSMUSG00000031274.17|collagen, type IV, alpha 5	ENSMUST00000112930.8|Col4a5|ENSMUSG00000031274.17|collagen, type IV, alpha 5
mm39_v1_chr5_+_66833434_66833600	0.38906	Hoxd11_Cdx1_Hoxc11	ENSMUST00000031131.11|Uchl1|ENSMUSG00000029223.13|ubiquitin carboxy-terminal hydrolase L1
mm39_v1_chr8_-_84769170_84769228	0.388989	Hoxd11_Cdx1_Hoxc11	ENSMUST00000005601.9|Il27ra|ENSMUSG00000005465.10|interleukin 27 receptor, alpha
mm39_v1_chr6_-_124942457_124942505	0.385399	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112439.9|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A
mm39_v1_chr3_+_5815863_5815866	0.381344	Hoxd11_Cdx1_Hoxc11	ENSMUST00000192045.2|Gm8797|ENSMUSG00000103034.2|predicted pseudogene 8797
mm39_v1_chr14_+_20724366_20724376	0.369442	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048657.10|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)
mm39_v1_chr12_+_103524690_103524690	0.366778	Hoxd11_Cdx1_Hoxc11	ENSMUST00000187155.7|Ppp4r4|ENSMUSG00000021209.13|protein phosphatase 4, regulatory subunit 4
mm39_v1_chr19_-_7319157_7319195	0.365865	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164205.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000165286.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000168324.2|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000032557.15|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2
mm39_v1_chr18_+_69726431_69726521	0.358331	Hoxd11_Cdx1_Hoxc11	ENSMUST00000201091.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201037.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114977.5|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chrX_+_132809189_132809213	0.341015	Hoxd11_Cdx1_Hoxc11	ENSMUST00000113304.2|Srpx2|ENSMUSG00000031253.16|sushi-repeat-containing protein, X-linked 2
mm39_v1_chr6_-_124942170_124942258	0.335317	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148485.2|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A	ENSMUST00000129976.8|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A
mm39_v1_chr17_+_71326542_71326558	0.333445	Hoxd11_Cdx1_Hoxc11	ENSMUST00000179759.3|Myom1|ENSMUSG00000024049.16|myomesin 1
mm39_v1_chr6_+_115398996_115399030	0.325793	Hoxd11_Cdx1_Hoxc11	ENSMUST00000000450.5|Pparg|ENSMUSG00000000440.13|peroxisome proliferator activated receptor gamma
mm39_v1_chr3_+_82915031_82915175	0.324994	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048486.13|Fgg|ENSMUSG00000033860.14|fibrinogen gamma chain	ENSMUST00000194175.2|Fgg|ENSMUSG00000033860.14|fibrinogen gamma chain
mm39_v1_chr9_-_110453427_110453520	0.319951	Hoxd11_Cdx1_Hoxc11	ENSMUST00000196876.2|Nradd|ENSMUSG00000032491.15|neurotrophin receptor associated death domain	ENSMUST00000035069.14|Nradd|ENSMUSG00000032491.15|neurotrophin receptor associated death domain
mm39_v1_chr17_+_74111823_74111836	0.319675	Hoxd11_Cdx1_Hoxc11	ENSMUST00000024860.9|Ehd3|ENSMUSG00000024065.9|EH-domain containing 3
mm39_v1_chr3_-_89867869_89867936	0.316603	Hoxd11_Cdx1_Hoxc11	ENSMUST00000069805.14|Atp8b2|ENSMUSG00000060671.13|ATPase, class I, type 8B, member 2
mm39_v1_chr18_+_21205386_21205408	0.315282	Hoxd11_Cdx1_Hoxc11	ENSMUST00000082235.5|Mep1b|ENSMUSG00000024313.9|meprin 1 beta
mm39_v1_chr2_+_83642910_83642987	0.307713	Hoxd11_Cdx1_Hoxc11	ENSMUST00000051454.4|Fam171b|ENSMUSG00000048388.4|family with sequence similarity 171, member B
mm39_v1_chr10_-_38998272_38998310	0.305692	Hoxd11_Cdx1_Hoxc11	ENSMUST00000136546.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B
mm39_v1_chr5_+_145141333_145141478	0.294825	Hoxd11_Cdx1_Hoxc11	ENSMUST00000085671.10|Zkscan5|ENSMUSG00000055991.16|zinc finger with KRAB and SCAN domains 5	ENSMUST00000031601.8|Zkscan5|ENSMUSG00000055991.16|zinc finger with KRAB and SCAN domains 5
mm39_v1_chr10_+_5543769_5543809	0.294003	Hoxd11_Cdx1_Hoxc11	ENSMUST00000051809.10|Myct1|ENSMUSG00000046916.10|myc target 1
mm39_v1_chr18_+_65054188_65054219	0.293646	Hoxd11_Cdx1_Hoxc11	ENSMUST00000236898.2|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like	ENSMUST00000237410.2|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr11_-_18968955_18968973	0.293609	Hoxd11_Cdx1_Hoxc11	ENSMUST00000068264.14|Meis1|ENSMUSG00000020160.19|Meis homeobox 1	ENSMUST00000185131.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr14_+_65595838_65595991	0.286427	Hoxd11_Cdx1_Hoxc11	ENSMUST00000224623.2|Zfp395|ENSMUSG00000034522.11|zinc finger protein 395
mm39_v1_chr15_-_79658608_79658673	0.285876	Hoxd11_Cdx1_Hoxc11	ENSMUST00000229644.2|Dnal4|ENSMUSG00000022420.17|dynein, axonemal, light chain 4	ENSMUST00000023055.8|Dnal4|ENSMUSG00000022420.17|dynein, axonemal, light chain 4
mm39_v1_chr16_-_32698091_32698136	0.279023	Hoxd11_Cdx1_Hoxc11	ENSMUST00000119810.2|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
mm39_v1_chr17_-_36149100_36149135	0.278239	Hoxd11_Cdx1_Hoxc11	ENSMUST00000134978.3|Tubb5|ENSMUSG00000001525.11|tubulin, beta 5 class I
mm39_v1_chr2_+_163348728_163348780	0.273088	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143911.8|Hnf4a|ENSMUSG00000017950.17|hepatic nuclear factor 4, alpha
mm39_v1_chr11_-_21320452_21320486	0.270356	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102875.11|Ugp2|ENSMUSG00000001891.17|UDP-glucose pyrophosphorylase 2
mm39_v1_chr7_-_33929708_33929761	0.267478	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038027.6|Gpi1|ENSMUSG00000036427.6|glucose-6-phosphate isomerase 1
mm39_v1_chr11_+_77107006_77107113	0.264521	Hoxd11_Cdx1_Hoxc11	ENSMUST00000156488.8|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2	ENSMUST00000037912.12|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2
mm39_v1_chrM_+_7758_7775	0.261184	Hoxd11_Cdx1_Hoxc11	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.1|mitochondrially encoded ATP synthase 8
mm39_v1_chr10_-_105410280_105410313	0.260868	Hoxd11_Cdx1_Hoxc11	ENSMUST00000061506.9|Tmtc2|ENSMUSG00000036019.9|transmembrane and tetratricopeptide repeat containing 2
mm39_v1_chr6_-_122317484_122317520	0.256207	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112600.9|Phc1|ENSMUSG00000040669.15|polyhomeotic 1
mm39_v1_chr11_+_97689819_97689847	0.256057	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143571.2|Lasp1|ENSMUSG00000038366.16|LIM and SH3 protein 1
mm39_v1_chr9_+_110592709_110592789	0.251735	Hoxd11_Cdx1_Hoxc11	ENSMUST00000079784.12|Myl3|ENSMUSG00000059741.14|myosin, light polypeptide 3
mm39_v1_chr6_+_125192514_125192554	0.250926	Hoxd11_Cdx1_Hoxc11	ENSMUST00000032487.14|Vamp1|ENSMUSG00000030337.17|vesicle-associated membrane protein 1	ENSMUST00000100942.9|Vamp1|ENSMUSG00000030337.17|vesicle-associated membrane protein 1	ENSMUST00000063588.11|Vamp1|ENSMUSG00000030337.17|vesicle-associated membrane protein 1
mm39_v1_chr11_+_96214078_96214152	0.248095	Hoxd11_Cdx1_Hoxc11	ENSMUST00000093944.10|Hoxb3|ENSMUSG00000048763.12|homeobox B3
mm39_v1_chr9_+_89081407_89081432	0.246393	Hoxd11_Cdx1_Hoxc11	ENSMUST00000138109.2|Gm29094|ENSMUSG00000100838.2|predicted gene 29094
mm39_v1_chr7_-_26880574_26880587	0.245882	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071986.13|Mia|ENSMUSG00000089661.10|melanoma inhibitory activity	ENSMUST00000121848.2|Mia|ENSMUSG00000089661.10|melanoma inhibitory activity
mm39_v1_chr10_+_86599836_86599836	0.245372	Hoxd11_Cdx1_Hoxc11	ENSMUST00000218802.2|Gm49358|ENSMUSG00000112743.2|predicted gene, 49358
mm39_v1_chr4_+_62204678_62204754	0.241631	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084530.9|Slc31a2|ENSMUSG00000066152.12|solute carrier family 31, member 2
mm39_v1_chr11_-_97591150_97591323	0.233014	Hoxd11_Cdx1_Hoxc11	ENSMUST00000018681.14|Pcgf2|ENSMUSG00000018537.17|polycomb group ring finger 2
mm39_v1_chr7_-_33929667_33929704	0.232507	Hoxd11_Cdx1_Hoxc11	ENSMUST00000206415.2|Gpi1|ENSMUSG00000036427.6|glucose-6-phosphate isomerase 1
mm39_v1_chr18_-_32170012_32170072	0.230642	Hoxd11_Cdx1_Hoxc11	ENSMUST00000134663.2|Myo7b|ENSMUSG00000024388.12|myosin VIIB
mm39_v1_chr6_-_124942366_124942421	0.227316	Hoxd11_Cdx1_Hoxc11	ENSMUST00000129446.8|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A	ENSMUST00000032220.15|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A
mm39_v1_chr17_-_57535003_57535136	0.224984	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177046.2|C3|ENSMUSG00000024164.16|complement component 3	ENSMUST00000024988.15|C3|ENSMUSG00000024164.16|complement component 3
mm39_v1_chr3_-_88317601_88317656	0.223335	Hoxd11_Cdx1_Hoxc11	ENSMUST00000193338.6|Pmf1|ENSMUSG00000028066.16|polyamine-modulated factor 1	ENSMUST00000056370.13|Pmf1|ENSMUSG00000028066.16|polyamine-modulated factor 1
mm39_v1_chr17_+_29487881_29488024	0.210966	Hoxd11_Cdx1_Hoxc11	ENSMUST00000234845.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000235038.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000235050.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000120346.9|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000234377.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000235074.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000235040.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000234256.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000234459.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004
mm39_v1_chr7_+_44711853_44711950	0.204574	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107829.9|Nosip|ENSMUSG00000003421.14|nitric oxide synthase interacting protein	ENSMUST00000003513.11|Nosip|ENSMUSG00000003421.14|nitric oxide synthase interacting protein	ENSMUST00000211465.2|Nosip|ENSMUSG00000003421.14|nitric oxide synthase interacting protein	ENSMUST00000210088.2|Nosip|ENSMUSG00000003421.14|nitric oxide synthase interacting protein	ENSMUST00000210520.2|Nosip|ENSMUSG00000003421.14|nitric oxide synthase interacting protein
mm39_v1_chrX_+_132809166_132809180	0.204345	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033606.15|Srpx2|ENSMUSG00000031253.16|sushi-repeat-containing protein, X-linked 2
mm39_v1_chr15_-_79658584_79658603	0.202089	Hoxd11_Cdx1_Hoxc11	ENSMUST00000069877.12|Dnal4|ENSMUSG00000022420.17|dynein, axonemal, light chain 4
mm39_v1_chr14_+_33775423_33775431	0.195464	Hoxd11_Cdx1_Hoxc11	ENSMUST00000058725.5|Antxrl|ENSMUSG00000047441.5|anthrax toxin receptor-like
mm39_v1_chr6_-_52203146_52203176	0.195448	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114425.3|Hoxa9|ENSMUSG00000038227.16|homeobox A9
mm39_v1_chr1_-_74639723_74639781	0.191577	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127938.8|Rnf25|ENSMUSG00000026171.13|ring finger protein 25	ENSMUST00000154874.8|Rnf25|ENSMUSG00000026171.13|ring finger protein 25
mm39_v1_chr11_-_110142565_110142602	0.191068	Hoxd11_Cdx1_Hoxc11	ENSMUST00000044003.14|Abca6|ENSMUSG00000044749.14|ATP-binding cassette, sub-family A (ABC1), member 6
mm39_v1_chr7_-_109215754_109215823	0.188323	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084738.5|Denn2b|ENSMUSG00000031024.14|DENN domain containing 2B
mm39_v1_chr11_+_82802079_82802120	0.187221	Hoxd11_Cdx1_Hoxc11	ENSMUST00000018989.14|Unc45b|ENSMUSG00000018845.15|unc-45 myosin chaperone B	ENSMUST00000164945.3|Unc45b|ENSMUSG00000018845.15|unc-45 myosin chaperone B
mm39_v1_chr7_-_19411866_19411877	0.186127	Hoxd11_Cdx1_Hoxc11	ENSMUST00000142352.9|Apoc2|ENSMUSG00000002992.18|apolipoprotein C-II
mm39_v1_chr8_+_106607507_106607583	0.181284	Hoxd11_Cdx1_Hoxc11	ENSMUST00000040254.16|Edc4|ENSMUSG00000036270.17|enhancer of mRNA decapping 4	ENSMUST00000119261.8|Edc4|ENSMUSG00000036270.17|enhancer of mRNA decapping 4
mm39_v1_chr16_+_38405718_38405870	0.18103	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165631.2|Tmem39a|ENSMUSG00000002845.15|transmembrane protein 39a
mm39_v1_chr16_+_17307464_17307491	0.174527	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115685.10|Aifm3|ENSMUSG00000022763.19|apoptosis-inducing factor, mitochondrion-associated 3
mm39_v1_chr7_+_126808016_126808071	0.171591	Hoxd11_Cdx1_Hoxc11	ENSMUST00000206204.2|Mylpf|ENSMUSG00000030672.13|myosin light chain, phosphorylatable, fast skeletal muscle	ENSMUST00000206772.2|Mylpf|ENSMUSG00000030672.13|myosin light chain, phosphorylatable, fast skeletal muscle
mm39_v1_chr13_-_101829070_101829109	0.168482	Hoxd11_Cdx1_Hoxc11	ENSMUST00000187009.7|Pik3r1|ENSMUSG00000041417.16|phosphoinositide-3-kinase regulatory subunit 1
mm39_v1_chr5_+_43672856_43672881	0.163787	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076939.10|C1qtnf7|ENSMUSG00000061535.12|C1q and tumor necrosis factor related protein 7
mm39_v1_chr3_-_95014090_95014208	0.162175	Hoxd11_Cdx1_Hoxc11	ENSMUST00000005768.8|Pip5k1a|ENSMUSG00000028126.17|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	ENSMUST00000107232.9|Pip5k1a|ENSMUSG00000028126.17|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	ENSMUST00000107236.9|Pip5k1a|ENSMUSG00000028126.17|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm39_v1_chr1_-_154975376_154975382	0.155817	Hoxd11_Cdx1_Hoxc11	ENSMUST00000055322.6|Ier5|ENSMUSG00000056708.6|immediate early response 5
mm39_v1_chr13_+_81031512_81031543	0.155515	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr7_-_100232276_100232332	0.155383	Hoxd11_Cdx1_Hoxc11	ENSMUST00000152876.3|Mrpl48|ENSMUSG00000030706.18|mitochondrial ribosomal protein L48	ENSMUST00000150042.8|Mrpl48|ENSMUSG00000030706.18|mitochondrial ribosomal protein L48	ENSMUST00000132888.9|Mrpl48|ENSMUSG00000030706.18|mitochondrial ribosomal protein L48
mm39_v1_chr19_-_40982576_40982591	0.153098	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117695.8|Blnk|ENSMUSG00000061132.14|B cell linker
mm39_v1_chr5_+_138185747_138185829	0.147984	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110934.9|Cnpy4|ENSMUSG00000036968.16|canopy FGF signaling regulator 4
mm39_v1_chr10_+_102376109_102376142	0.144812	Hoxd11_Cdx1_Hoxc11	ENSMUST00000055355.6|Rassf9|ENSMUSG00000044921.6|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
mm39_v1_chr3_-_88366351_88366408	0.141526	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165898.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	ENSMUST00000127436.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm39_v1_chr5_-_120610828_120610895	0.141526	Hoxd11_Cdx1_Hoxc11	ENSMUST00000052258.14|Sdsl|ENSMUSG00000029596.14|serine dehydratase-like	ENSMUST00000031594.13|Sdsl|ENSMUSG00000029596.14|serine dehydratase-like
mm39_v1_chr2_+_29236815_29236854	0.140879	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028139.11|Med27|ENSMUSG00000026799.16|mediator complex subunit 27	ENSMUST00000113830.11|Med27|ENSMUSG00000026799.16|mediator complex subunit 27
mm39_v1_chr7_-_44711771_44711859	0.140676	Hoxd11_Cdx1_Hoxc11	ENSMUST00000210101.2|Prrg2|ENSMUSG00000007837.12|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	ENSMUST00000209219.2|Prrg2|ENSMUSG00000007837.12|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm39_v1_chr14_+_66043515_66043681	0.139409	Hoxd11_Cdx1_Hoxc11	ENSMUST00000139644.2|Pbk|ENSMUSG00000022033.10|PDZ binding kinase
mm39_v1_chr19_+_29923182_29923199	0.138199	Hoxd11_Cdx1_Hoxc11	ENSMUST00000025724.9|Il33|ENSMUSG00000024810.17|interleukin 33
mm39_v1_chr2_-_29677634_29677688	0.129848	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177467.8|Trub2|ENSMUSG00000039826.14|TruB pseudouridine (psi) synthase family member 2	ENSMUST00000113807.10|Trub2|ENSMUSG00000039826.14|TruB pseudouridine (psi) synthase family member 2
mm39_v1_chr5_-_62923463_62923615	0.127256	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr11_+_115824108_115824108	0.12429	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140991.2|Sap30bp|ENSMUSG00000020755.10|SAP30 binding protein
mm39_v1_chr16_-_91525655_91525690	0.118773	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117644.8|Cryzl1|ENSMUSG00000058240.15|crystallin, zeta (quinone reductase)-like 1
mm39_v1_chr13_-_101829132_101829146	0.114543	Hoxd11_Cdx1_Hoxc11	ENSMUST00000035532.13|Pik3r1|ENSMUSG00000041417.16|phosphoinositide-3-kinase regulatory subunit 1
mm39_v1_chr19_-_46384158_46384199	0.111127	Hoxd11_Cdx1_Hoxc11	ENSMUST00000237742.2|Actr1a|ENSMUSG00000025228.6|ARP1 actin-related protein 1A, centractin alpha	ENSMUST00000040270.6|Actr1a|ENSMUSG00000025228.6|ARP1 actin-related protein 1A, centractin alpha
mm39_v1_chr9_+_103917821_103917861	0.110673	Hoxd11_Cdx1_Hoxc11	ENSMUST00000216593.2|Nphp3|ENSMUSG00000032558.20|nephronophthisis 3 (adolescent)	ENSMUST00000147249.3|Gm28305|ENSMUSG00000101152.2|predicted gene 28305
mm39_v1_chr19_+_56414114_56414126	0.110576	Hoxd11_Cdx1_Hoxc11	ENSMUST00000238892.2|Casp7|ENSMUSG00000025076.13|caspase 7
mm39_v1_chr18_+_37651393_37651412	0.109481	Hoxd11_Cdx1_Hoxc11	ENSMUST00000097609.3|Pcdhb22|ENSMUSG00000073591.5|protocadherin beta 22
mm39_v1_chr9_-_64080161_64080201	0.109236	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176299.8|Zwilch|ENSMUSG00000032400.19|zwilch kinetochore protein	ENSMUST00000130127.8|Zwilch|ENSMUSG00000032400.19|zwilch kinetochore protein	ENSMUST00000176794.8|Zwilch|ENSMUSG00000032400.19|zwilch kinetochore protein	ENSMUST00000177045.8|Zwilch|ENSMUSG00000032400.19|zwilch kinetochore protein
mm39_v1_chr1_+_12762501_12762590	0.107085	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177608.8|Sulf1|ENSMUSG00000016918.16|sulfatase 1	ENSMUST00000180062.8|Sulf1|ENSMUSG00000016918.16|sulfatase 1
mm39_v1_chr18_+_37637317_37637349	0.106389	Hoxd11_Cdx1_Hoxc11	ENSMUST00000052179.8|Pcdhb20|ENSMUSG00000046191.8|protocadherin beta 20
mm39_v1_chr4_+_116578117_116578201	0.105733	Hoxd11_Cdx1_Hoxc11	ENSMUST00000045542.13|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2	ENSMUST00000106459.8|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2
mm39_v1_chr16_-_22255264_22255315	0.10565	Hoxd11_Cdx1_Hoxc11	ENSMUST00000168774.8|Etv5|ENSMUSG00000013089.16|ets variant 5
mm39_v1_chr4_-_76262464_76262486	0.105468	Hoxd11_Cdx1_Hoxc11	ENSMUST00000050757.16|Ptprd|ENSMUSG00000028399.19|protein tyrosine phosphatase, receptor type, D
mm39_v1_chr5_-_142892457_142892509	0.104274	Hoxd11_Cdx1_Hoxc11	ENSMUST00000167721.8|Actb|ENSMUSG00000029580.15|actin, beta	ENSMUST00000163829.2|Actb|ENSMUSG00000029580.15|actin, beta	ENSMUST00000100497.11|Actb|ENSMUSG00000029580.15|actin, beta
mm39_v1_chr4_-_81360993_81361073	0.103605	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107262.8|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component	ENSMUST00000102830.10|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component
mm39_v1_chr1_-_171854818_171854880	0.103386	Hoxd11_Cdx1_Hoxc11	ENSMUST00000138714.2|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000027837.13|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000111264.8|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2
mm39_v1_chr17_-_71153283_71153321	0.100693	Hoxd11_Cdx1_Hoxc11	ENSMUST00000156484.2|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr2_-_129213050_129213066	0.100411	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028881.14|Il1b|ENSMUSG00000027398.14|interleukin 1 beta
mm39_v1_chrY_-_7169293_7169293	0.0999913	Hoxd11_Cdx1_Hoxc11	ENSMUST00000189201.2|Gm21244|ENSMUSG00000094484.3|predicted gene, 21244
mm39_v1_chr3_+_5283606_5283621	0.0999036	Hoxd11_Cdx1_Hoxc11	ENSMUST00000026284.13|Zfhx4|ENSMUSG00000025255.19|zinc finger homeodomain 4
mm39_v1_chr11_+_97917746_97917757	0.0995509	Hoxd11_Cdx1_Hoxc11	ENSMUST00000017548.7|Rpl19|ENSMUSG00000017404.13|ribosomal protein L19
mm39_v1_chr2_-_18053158_18053260	0.0992435	Hoxd11_Cdx1_Hoxc11	ENSMUST00000066885.6|Skida1|ENSMUSG00000054074.10|SKI/DACH domain containing 1
mm39_v1_chr3_+_5283577_5283604	0.0988351	Hoxd11_Cdx1_Hoxc11	ENSMUST00000175866.8|Zfhx4|ENSMUSG00000025255.19|zinc finger homeodomain 4
mm39_v1_chr17_-_16046780_16046853	0.097273	Hoxd11_Cdx1_Hoxc11	ENSMUST00000232638.2|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B	ENSMUST00000170578.3|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B
mm39_v1_chr3_+_67799510_67799565	0.097121	Hoxd11_Cdx1_Hoxc11	ENSMUST00000063263.5|Iqcj|ENSMUSG00000051777.7|IQ motif containing J	ENSMUST00000182006.4|Iqschfp|ENSMUSG00000102422.2|Iqcj and Schip1 fusion protein
mm39_v1_chr9_-_44710480_44710604	0.095516	Hoxd11_Cdx1_Hoxc11	ENSMUST00000214833.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000213972.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000214431.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000213363.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000114705.9|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000002100.8|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25
mm39_v1_chr10_+_129306867_129306867	0.0954865	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213222.2|Olfr788|ENSMUSG00000049217.5|olfactory receptor 788
mm39_v1_chr2_+_65760477_65760534	0.0948191	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176109.8|Csrnp3|ENSMUSG00000044647.17|cysteine-serine-rich nuclear protein 3
mm39_v1_chr6_-_12749409_12749440	0.0946928	Hoxd11_Cdx1_Hoxc11	ENSMUST00000119581.7|Thsd7a|ENSMUSG00000032625.15|thrombospondin, type I, domain containing 7A
mm39_v1_chr9_-_40257586_40257634	0.0944931	Hoxd11_Cdx1_Hoxc11	ENSMUST00000121357.8|Gramd1b|ENSMUSG00000040111.18|GRAM domain containing 1B
mm39_v1_chr8_+_120719177_120719265	0.0931386	Hoxd11_Cdx1_Hoxc11	ENSMUST00000132583.8|Crispld2|ENSMUSG00000031825.17|cysteine-rich secretory protein LCCL domain containing 2	ENSMUST00000034282.16|Crispld2|ENSMUSG00000031825.17|cysteine-rich secretory protein LCCL domain containing 2
mm39_v1_chrM_+_7779_7927	0.0916454	Hoxd11_Cdx1_Hoxc11	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm39_v1_chr8_+_121842902_121842916	0.0913512	Hoxd11_Cdx1_Hoxc11	ENSMUST00000054691.8|Foxc2|ENSMUSG00000046714.8|forkhead box C2
mm39_v1_chr10_+_79656823_79656863	0.0904388	Hoxd11_Cdx1_Hoxc11	ENSMUST00000169041.9|Misp|ENSMUSG00000035852.12|mitotic spindle positioning
mm39_v1_chr9_+_56326089_56326131	0.0900587	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213242.2|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A	ENSMUST00000214771.2|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A	ENSMUST00000217518.2|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A	ENSMUST00000214869.2|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A
mm39_v1_chr3_+_96128427_96128450	0.0887904	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090781.8|H2bc21|ENSMUSG00000068854.8|H2B clustered histone 21
mm39_v1_chr11_-_100246209_100246242	0.0883162	Hoxd11_Cdx1_Hoxc11	ENSMUST00000146878.3|Hap1|ENSMUSG00000006930.16|huntingtin-associated protein 1
mm39_v1_chr6_-_12749192_12749252	0.086374	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172356.8|Thsd7a|ENSMUSG00000032625.15|thrombospondin, type I, domain containing 7A
mm39_v1_chr5_+_137639538_137639699	0.082019	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177466.8|Sap25|ENSMUSG00000079165.11|sin3 associated polypeptide	ENSMUST00000166099.3|Sap25|ENSMUSG00000079165.11|sin3 associated polypeptide
mm39_v1_chr6_-_122778598_122778618	0.0818219	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165884.8|Slc2a3|ENSMUSG00000003153.11|solute carrier family 2 (facilitated glucose transporter), member 3
mm39_v1_chr8_+_26401698_26401720	0.0810312	Hoxd11_Cdx1_Hoxc11	ENSMUST00000120653.8|Kcnu1|ENSMUSG00000031576.17|potassium channel, subfamily U, member 1	ENSMUST00000126226.2|Kcnu1|ENSMUSG00000031576.17|potassium channel, subfamily U, member 1
mm39_v1_chr6_-_122317457_122317471	0.0806212	Hoxd11_Cdx1_Hoxc11	ENSMUST00000160843.8|Phc1|ENSMUSG00000040669.15|polyhomeotic 1
mm39_v1_chr11_-_83957889_83957922	0.0794091	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108101.8|Dusp14|ENSMUSG00000018648.16|dual specificity phosphatase 14
mm39_v1_chr6_-_116650728_116650750	0.0778415	Hoxd11_Cdx1_Hoxc11	ENSMUST00000204203.2|Rassf4|ENSMUSG00000042129.9|Ras association (RalGDS/AF-6) domain family member 4
mm39_v1_chr3_+_84573499_84573566	0.0777695	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107682.2|Tmem154|ENSMUSG00000056498.14|transmembrane protein 154
mm39_v1_chrX_+_151922936_151923006	0.0761238	Hoxd11_Cdx1_Hoxc11	ENSMUST00000039720.11|Rragb|ENSMUSG00000041658.13|Ras-related GTP binding B	ENSMUST00000144175.3|Rragb|ENSMUSG00000041658.13|Ras-related GTP binding B
mm39_v1_chr14_+_60940394_60940420	0.075698	Hoxd11_Cdx1_Hoxc11	ENSMUST00000162131.9|Spata13|ENSMUSG00000021990.17|spermatogenesis associated 13
mm39_v1_chr3_-_88366159_88366205	0.0734075	Hoxd11_Cdx1_Hoxc11	ENSMUST00000147200.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	ENSMUST00000169222.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm39_v1_chr8_+_107757847_107757862	0.0690825	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034388.10|Vps4a|ENSMUSG00000031913.10|vacuolar protein sorting 4A
mm39_v1_chr10_+_89906956_89906982	0.0683526	Hoxd11_Cdx1_Hoxc11	ENSMUST00000183109.2|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B
mm39_v1_chr19_-_56536646_56536696	0.0660856	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182276.2|Dclre1a|ENSMUSG00000025077.14|DNA cross-link repair 1A
mm39_v1_chr13_+_19369097_19369151	0.0641975	Hoxd11_Cdx1_Hoxc11	ENSMUST00000103554.5|Trgv4|ENSMUSG00000076745.5|T cell receptor gamma, variable 4
mm39_v1_chr10_-_28862289_28862305	0.0638487	Hoxd11_Cdx1_Hoxc11	ENSMUST00000152363.8|2310057J18Rik|ENSMUSG00000015519.13|RIKEN cDNA 2310057J18 gene	ENSMUST00000015663.7|2310057J18Rik|ENSMUSG00000015519.13|RIKEN cDNA 2310057J18 gene
mm39_v1_chr13_+_104246259_104246337	0.0634264	Hoxd11_Cdx1_Hoxc11	ENSMUST00000160322.8|Sgtb|ENSMUSG00000042743.14|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	ENSMUST00000159574.2|Sgtb|ENSMUSG00000042743.14|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
mm39_v1_chr10_-_30494333_30494390	0.0631056	Hoxd11_Cdx1_Hoxc11	ENSMUST00000019925.7|Hint3|ENSMUSG00000019791.13|histidine triad nucleotide binding protein 3
mm39_v1_chr2_+_111355548_111355548	0.061368	Hoxd11_Cdx1_Hoxc11	ENSMUST00000217845.3|Olfr1293-ps|ENSMUSG00000108908.5|olfactory receptor 1293, pseudogene
mm39_v1_chr10_-_107321938_107321995	0.061162	Hoxd11_Cdx1_Hoxc11	ENSMUST00000000445.2|Myf5|ENSMUSG00000000435.2|myogenic factor 5
mm39_v1_chr13_+_38223023_38223023	0.0610003	Hoxd11_Cdx1_Hoxc11	ENSMUST00000226110.2|Riok1|ENSMUSG00000021428.10|RIO kinase 1
mm39_v1_chr17_+_28059129_28059154	0.060224	Hoxd11_Cdx1_Hoxc11	ENSMUST00000233657.2|Snrpc|ENSMUSG00000024217.11|U1 small nuclear ribonucleoprotein C
mm39_v1_chr6_-_98319684_98319715	0.0601076	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164491.3|Mdfic2|ENSMUSG00000090667.3|MyoD family inhibitor domain containing 2
mm39_v1_chr17_+_28059099_28059116	0.0591529	Hoxd11_Cdx1_Hoxc11	ENSMUST00000233752.2|Snrpc|ENSMUSG00000024217.11|U1 small nuclear ribonucleoprotein C
mm39_v1_chr7_-_103094646_103094646	0.0590835	Hoxd11_Cdx1_Hoxc11	ENSMUST00000215417.2|Olfr605|ENSMUSG00000109659.4|olfactory receptor 605
mm39_v1_chr9_+_98873831_98873884	0.0589782	Hoxd11_Cdx1_Hoxc11	ENSMUST00000185472.2|Faim|ENSMUSG00000032463.11|Fas apoptotic inhibitory molecule
mm39_v1_chr16_-_59092995_59092995	0.0581285	Hoxd11_Cdx1_Hoxc11	ENSMUST00000216834.2|Olfr201|ENSMUSG00000074995.3|olfactory receptor 201
mm39_v1_chr9_+_38164070_38164070	0.0577334	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213129.2|Olfr143|ENSMUSG00000094778.4|olfactory receptor 143
mm39_v1_chr15_-_101422054_101422054	0.0555847	Hoxd11_Cdx1_Hoxc11	ENSMUST00000230067.3|Gm49425|ENSMUSG00000116336.3|predicted gene, 49425
mm39_v1_chr7_-_30750856_30750911	0.053159	Hoxd11_Cdx1_Hoxc11	ENSMUST00000073892.6|Fxyd7|ENSMUSG00000036578.8|FXYD domain-containing ion transport regulator 7
mm39_v1_chr2_-_26012751_26012850	0.0507759	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140993.2|Nacc2|ENSMUSG00000026932.15|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	ENSMUST00000028300.6|Nacc2|ENSMUSG00000026932.15|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm39_v1_chr5_-_138185686_138185724	0.0507631	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110936.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6
mm39_v1_chr13_-_99027482_99027543	0.0494504	Hoxd11_Cdx1_Hoxc11	ENSMUST00000179301.8|Tnpo1|ENSMUSG00000009470.18|transportin 1	ENSMUST00000179271.2|Tnpo1|ENSMUSG00000009470.18|transportin 1
mm39_v1_chr15_-_80989200_80989284	0.0483412	Hoxd11_Cdx1_Hoxc11	ENSMUST00000109579.9|Mrtfa|ENSMUSG00000042292.19|myocardin related transcription factor A
mm39_v1_chr11_-_18968714_18968828	0.045804	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177417.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr2_-_18053595_18053634	0.0457004	Hoxd11_Cdx1_Hoxc11	ENSMUST00000142856.2|Skida1|ENSMUSG00000054074.10|SKI/DACH domain containing 1
mm39_v1_chr17_+_28059036_28059094	0.044834	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071006.9|Snrpc|ENSMUSG00000024217.11|U1 small nuclear ribonucleoprotein C
mm39_v1_chr15_-_101441254_101441259	0.0436141	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023720.8|Krt84|ENSMUSG00000044294.9|keratin 84
mm39_v1_chr14_-_14371476_14371577	0.0419	Hoxd11_Cdx1_Hoxc11	ENSMUST00000225653.2|Pxk|ENSMUSG00000033885.16|PX domain containing serine/threonine kinase	ENSMUST00000112689.9|Pxk|ENSMUSG00000033885.16|PX domain containing serine/threonine kinase	ENSMUST00000036682.9|Pxk|ENSMUSG00000033885.16|PX domain containing serine/threonine kinase
mm39_v1_chr7_-_127048280_127048338	0.0400785	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053392.11|Zfp689|ENSMUSG00000048921.12|zinc finger protein 689
mm39_v1_chr6_-_144155197_144155294	0.0385958	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038815.14|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000111749.8|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000170367.9|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5
mm39_v1_chr5_+_119970733_119970780	0.0376206	Hoxd11_Cdx1_Hoxc11	ENSMUST00000202723.4|Tbx5|ENSMUSG00000018263.12|T-box 5
mm39_v1_chr4_-_6454262_6454330	0.0375625	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029910.12|Nsmaf|ENSMUSG00000028245.16|neutral sphingomyelinase (N-SMase) activation associated factor
mm39_v1_chr11_-_102210568_102210684	0.0369563	Hoxd11_Cdx1_Hoxc11	ENSMUST00000173870.8|Ubtf|ENSMUSG00000020923.18|upstream binding transcription factor, RNA polymerase I
mm39_v1_chr4_+_11704438_11704457	0.035936	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108304.9|Gem|ENSMUSG00000028214.14|GTP binding protein (gene overexpressed in skeletal muscle)
mm39_v1_chr14_+_28233301_28233362	0.0347593	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112272.2|Wnt5a|ENSMUSG00000021994.16|wingless-type MMTV integration site family, member 5A
mm39_v1_chr4_+_136011969_136011996	0.0345944	Hoxd11_Cdx1_Hoxc11	ENSMUST00000144217.8|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46
mm39_v1_chr10_+_101517348_101517525	0.0337397	Hoxd11_Cdx1_Hoxc11	ENSMUST00000179929.8|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C	ENSMUST00000219195.2|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C	ENSMUST00000127504.9|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C
mm39_v1_chr2_+_113235475_113235502	0.033153	Hoxd11_Cdx1_Hoxc11	ENSMUST00000238883.2|Fmn1|ENSMUSG00000044042.20|formin 1
mm39_v1_chr2_-_115895202_115895231	0.0327682	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110906.9|Meis2|ENSMUSG00000027210.21|Meis homeobox 2
mm39_v1_chr19_-_6964988_6965103	0.0316219	Hoxd11_Cdx1_Hoxc11	ENSMUST00000130048.8|Vegfb|ENSMUSG00000024962.14|vascular endothelial growth factor B	ENSMUST00000025914.7|Vegfb|ENSMUSG00000024962.14|vascular endothelial growth factor B
mm39_v1_chrX_-_7185424_7185527	0.0311571	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115746.8|Clcn5|ENSMUSG00000004317.15|chloride channel, voltage-sensitive 5
mm39_v1_chr2_-_119039247_119039283	0.0305036	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038439.4|Dnajc17|ENSMUSG00000034278.4|DnaJ heat shock protein family (Hsp40) member C17
mm39_v1_chr19_-_7319211_7319228	0.0281585	Hoxd11_Cdx1_Hoxc11	ENSMUST00000171393.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2
mm39_v1_chr3_-_19319155_19319199	0.028008	Hoxd11_Cdx1_Hoxc11	ENSMUST00000091314.11|Pde7a|ENSMUSG00000069094.13|phosphodiesterase 7A
mm39_v1_chr8_+_15107646_15107660	0.027118	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033842.4|Myom2|ENSMUSG00000031461.5|myomesin 2
mm39_v1_chr15_-_77129706_77129747	0.0264947	Hoxd11_Cdx1_Hoxc11	ENSMUST00000228361.2|Rbfox2|ENSMUSG00000033565.19|RNA binding protein, fox-1 homolog (C. elegans) 2
mm39_v1_chr19_-_45224251_45224251	0.0258209	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099401.6|Lbx1|ENSMUSG00000025216.10|ladybird homeobox 1
mm39_v1_chr11_-_18968979_18968990	0.025559	Hoxd11_Cdx1_Hoxc11	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr4_+_59035088_59035247	0.0252897	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041160.13|Gng10|ENSMUSG00000038607.13|guanine nucleotide binding protein (G protein), gamma 10
mm39_v1_chr4_-_82768958_82769051	0.0252738	Hoxd11_Cdx1_Hoxc11	ENSMUST00000139401.2|Zdhhc21|ENSMUSG00000028403.16|zinc finger, DHHC domain containing 21
mm39_v1_chr10_+_93476903_93476918	0.0251219	Hoxd11_Cdx1_Hoxc11	ENSMUST00000020204.5|Ntn4|ENSMUSG00000020019.5|netrin 4
mm39_v1_chr2_-_71198091_71198142	0.02477	Hoxd11_Cdx1_Hoxc11	ENSMUST00000151937.8|Slc25a12|ENSMUSG00000027010.17|solute carrier family 25 (mitochondrial carrier, Aralar), member 12
mm39_v1_chr18_-_3281752_3281778	0.0239416	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140332.8|Crem|ENSMUSG00000063889.17|cAMP responsive element modulator	ENSMUST00000147138.8|Crem|ENSMUSG00000063889.17|cAMP responsive element modulator
mm39_v1_chr16_-_95792090_95792160	0.0225143	Hoxd11_Cdx1_Hoxc11	ENSMUST00000233128.2|Psmg1|ENSMUSG00000022913.17|proteasome (prosome, macropain) assembly chaperone 1	ENSMUST00000023630.16|Psmg1|ENSMUSG00000022913.17|proteasome (prosome, macropain) assembly chaperone 1
mm39_v1_chr15_-_10485976_10486037	0.0220084	Hoxd11_Cdx1_Hoxc11	ENSMUST00000169050.8|Brix1|ENSMUSG00000022247.13|BRX1, biogenesis of ribosomes	ENSMUST00000022855.12|Brix1|ENSMUSG00000022247.13|BRX1, biogenesis of ribosomes
mm39_v1_chr17_-_37523969_37524009	0.0218268	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060728.7|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95	ENSMUST00000216318.2|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95
mm39_v1_chr7_-_136916123_136916174	0.0215778	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106118.10|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000168203.2|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000169486.9|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000033378.13|Ebf3|ENSMUSG00000010476.15|early B cell factor 3
mm39_v1_chr3_+_122298308_122298324	0.021386	Hoxd11_Cdx1_Hoxc11	ENSMUST00000199358.2|Bcar3|ENSMUSG00000028121.9|breast cancer anti-estrogen resistance 3
mm39_v1_chr2_-_88058678_88058678	0.0210462	Hoxd11_Cdx1_Hoxc11	ENSMUST00000214386.2|Olfr1170|ENSMUSG00000075133.3|olfactory receptor 1170
mm39_v1_chr2_+_119039456_119039517	0.0203928	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102519.5|Zfyve19|ENSMUSG00000068580.12|zinc finger, FYVE domain containing 19
mm39_v1_chrX_+_81992467_81992521	0.0197378	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114000.8|Dmd|ENSMUSG00000045103.20|dystrophin, muscular dystrophy
mm39_v1_chr5_-_108943211_108943241	0.0195745	Hoxd11_Cdx1_Hoxc11	ENSMUST00000004943.2|Tmed11|ENSMUSG00000004821.2|transmembrane p24 trafficking protein 11
mm39_v1_chr1_-_120197979_120198153	0.0178259	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112639.8|Steap3|ENSMUSG00000026389.17|STEAP family member 3
mm39_v1_chr12_+_113038376_113038392	0.0168549	Hoxd11_Cdx1_Hoxc11	ENSMUST00000109729.3|Tex22|ENSMUSG00000012211.14|testis expressed gene 22
mm39_v1_chr1_-_128030148_128030223	0.0168223	Hoxd11_Cdx1_Hoxc11	ENSMUST00000086614.12|Zranb3|ENSMUSG00000036086.17|zinc finger, RAN-binding domain containing 3
mm39_v1_chr5_-_83502793_83502820	0.0164055	Hoxd11_Cdx1_Hoxc11	ENSMUST00000146669.2|Tecrl|ENSMUSG00000049537.11|trans-2,3-enoyl-CoA reductase-like
mm39_v1_chr2_+_29678248_29678314	0.0155834	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028137.10|Coq4|ENSMUSG00000026798.11|coenzyme Q4	ENSMUST00000148791.2|Coq4|ENSMUSG00000026798.11|coenzyme Q4
mm39_v1_chr2_+_145627900_145628073	0.0155597	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110005.8|Rin2|ENSMUSG00000001768.17|Ras and Rab interactor 2	ENSMUST00000094480.11|Rin2|ENSMUSG00000001768.17|Ras and Rab interactor 2
mm39_v1_chr7_-_127048165_127048249	0.0153006	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106299.2|Zfp689|ENSMUSG00000048921.12|zinc finger protein 689
mm39_v1_chr1_+_66360865_66360878	0.0149991	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114013.8|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2
mm39_v1_chr8_-_37420293_37420314	0.0141334	Hoxd11_Cdx1_Hoxc11	ENSMUST00000179501.2|Dlc1|ENSMUSG00000031523.17|deleted in liver cancer 1
mm39_v1_chr2_-_34261121_34261265	0.0136416	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127353.3|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3	ENSMUST00000141653.3|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3
mm39_v1_chr14_-_31503869_31503892	0.0133022	Hoxd11_Cdx1_Hoxc11	ENSMUST00000227089.2|Ankrd28|ENSMUSG00000014496.9|ankyrin repeat domain 28
mm39_v1_chr8_+_57908920_57908957	0.0133018	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034023.4|Scrg1|ENSMUSG00000031610.4|scrapie responsive gene 1
mm39_v1_chr6_+_136528155_136528189	0.0129919	Hoxd11_Cdx1_Hoxc11	ENSMUST00000186742.2|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr3_+_102981326_102981349	0.0126854	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090715.13|Ampd1|ENSMUSG00000070385.13|adenosine monophosphate deaminase 1	ENSMUST00000155034.6|Ampd1|ENSMUSG00000070385.13|adenosine monophosphate deaminase 1
mm39_v1_chr15_-_77129786_77129804	0.0121311	Hoxd11_Cdx1_Hoxc11	ENSMUST00000228558.2|Rbfox2|ENSMUSG00000033565.19|RNA binding protein, fox-1 homolog (C. elegans) 2
mm39_v1_chrX_-_42363663_42363663	0.0119976	Hoxd11_Cdx1_Hoxc11	ENSMUST00000016294.8|Tenm1|ENSMUSG00000016150.16|teneurin transmembrane protein 1
mm39_v1_chr4_+_98919183_98919200	0.0115332	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030280.7|Angptl3|ENSMUSG00000028553.13|angiopoietin-like 3
mm39_v1_chr10_-_33920300_33920315	0.0113698	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048052.7|Calhm4|ENSMUSG00000039508.7|calcium homeostasis modulator family member 4
mm39_v1_chr1_+_12762712_12762763	0.0106666	Hoxd11_Cdx1_Hoxc11	ENSMUST00000186051.7|Sulf1|ENSMUSG00000016918.16|sulfatase 1
mm39_v1_chr7_-_30750828_30750847	0.0103571	Hoxd11_Cdx1_Hoxc11	ENSMUST00000206341.2|Fxyd7|ENSMUSG00000036578.8|FXYD domain-containing ion transport regulator 7
mm39_v1_chr2_-_140513382_140513399	0.0098973	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110057.3|Flrt3|ENSMUSG00000051379.13|fibronectin leucine rich transmembrane protein 3
mm39_v1_chr2_-_45002902_45003021	0.00907034	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076836.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000176732.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000200844.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr4_+_108336164_108336278	0.00897438	Hoxd11_Cdx1_Hoxc11	ENSMUST00000155068.2|Tut4|ENSMUSG00000034610.15|terminal uridylyl transferase 4
mm39_v1_chr19_+_56536685_56536716	0.00895522	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071423.7|Nhlrc2|ENSMUSG00000025078.10|NHL repeat containing 2
mm39_v1_chr13_-_23302396_23302396	0.00624035	Hoxd11_Cdx1_Hoxc11	ENSMUST00000227110.2|Vmn1r217|ENSMUSG00000115791.2|vomeronasal 1 receptor 217
mm39_v1_chr6_-_8259098_8259173	0.006116	Hoxd11_Cdx1_Hoxc11	ENSMUST00000012627.5|Rpa3|ENSMUSG00000012483.5|replication protein A3
mm39_v1_chr18_+_4994600_4994623	0.00502613	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140448.8|Svil|ENSMUSG00000024236.19|supervillin
mm39_v1_chr3_+_62327089_62327089	0.00442893	Hoxd11_Cdx1_Hoxc11	ENSMUST00000161057.2|Arhgef26|ENSMUSG00000036885.15|Rho guanine nucleotide exchange factor (GEF) 26
mm39_v1_chr14_-_24053994_24054049	0.00441755	Hoxd11_Cdx1_Hoxc11	ENSMUST00000225431.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000188210.8|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000224787.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000225315.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000225556.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000223727.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000223655.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000224077.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000224812.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000224285.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000225471.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000224232.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000223749.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000224025.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
mm39_v1_chr3_+_121838076_121838118	0.00293759	Hoxd11_Cdx1_Hoxc11	ENSMUST00000013995.13|Abca4|ENSMUSG00000028125.15|ATP-binding cassette, sub-family A (ABC1), member 4
mm39_v1_chr15_+_11000802_11000823	0.00227707	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117100.4|Slc45a2|ENSMUSG00000022243.11|solute carrier family 45, member 2
mm39_v1_chr19_-_56536443_56536480	0.00192807	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182059.2|Dclre1a|ENSMUSG00000025077.14|DNA cross-link repair 1A
mm39_v1_chr6_-_144155167_144155195	0.00144985	Hoxd11_Cdx1_Hoxc11	ENSMUST00000077160.12|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5
mm39_v1_chr7_-_34012934_34012953	0.00102603	Hoxd11_Cdx1_Hoxc11	ENSMUST00000206399.2|Garre1|ENSMUSG00000066571.14|granule associated Rac and RHOG effector 1
