mm39_v1_chr6_-_41291634_41291649	5.88794	Hoxd9	ENSMUST00000064324.12|Try5|ENSMUSG00000036938.18|trypsin 5
mm39_v1_chr14_+_66043281_66043346	4.01946	Hoxd9	ENSMUST00000022612.10|Pbk|ENSMUSG00000022033.10|PDZ binding kinase
mm39_v1_chr15_+_6673167_6673187	3.90602	Hoxd9	ENSMUST00000163073.2|Fyb|ENSMUSG00000022148.17|FYN binding protein
mm39_v1_chr3_-_115923098_115923113	3.86007	Hoxd9	ENSMUST00000196449.5|Vcam1|ENSMUSG00000027962.15|vascular cell adhesion molecule 1
mm39_v1_chr3_-_14843512_14843526	2.98752	Hoxd9	ENSMUST00000094365.11|Car1|ENSMUSG00000027556.16|carbonic anhydrase 1
mm39_v1_chrX_-_142610371_142610410	2.81155	Hoxd9	ENSMUST00000087316.6|Capn6|ENSMUSG00000067276.6|calpain 6
mm39_v1_chr15_-_98832403_98832467	2.7779	Hoxd9	ENSMUST00000077577.8|Tuba1b|ENSMUSG00000023004.9|tubulin, alpha 1B
mm39_v1_chr6_-_142418801_142418841	2.5751	Hoxd9	ENSMUST00000032371.8|Gys2|ENSMUSG00000030244.8|glycogen synthase 2
mm39_v1_chr9_-_64080161_64080201	2.0743	Hoxd9	ENSMUST00000176299.8|Zwilch|ENSMUSG00000032400.19|zwilch kinetochore protein	ENSMUST00000130127.8|Zwilch|ENSMUSG00000032400.19|zwilch kinetochore protein	ENSMUST00000176794.8|Zwilch|ENSMUSG00000032400.19|zwilch kinetochore protein	ENSMUST00000177045.8|Zwilch|ENSMUSG00000032400.19|zwilch kinetochore protein
mm39_v1_chr3_+_60503051_60503132	1.81537	Hoxd9	ENSMUST00000192757.6|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1	ENSMUST00000193518.6|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1	ENSMUST00000195817.3|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chrX_-_165992311_165992475	1.80824	Hoxd9	ENSMUST00000112172.4|Tmsb4x|ENSMUSG00000049775.17|thymosin, beta 4, X chromosome
mm39_v1_chr16_-_75706161_75706200	1.77158	Hoxd9	ENSMUST00000114239.9|Samsn1|ENSMUSG00000022876.19|SAM domain, SH3 domain and nuclear localization signals, 1
mm39_v1_chr10_-_35587888_35587888	1.75434	Hoxd9	ENSMUST00000080898.4|Amd2|ENSMUSG00000063953.4|S-adenosylmethionine decarboxylase 2
mm39_v1_chr7_+_89814713_89814756	1.71614	Hoxd9	ENSMUST00000207084.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chrX_-_165992145_165992168	1.66567	Hoxd9	ENSMUST00000112176.8|Tmsb4x|ENSMUSG00000049775.17|thymosin, beta 4, X chromosome
mm39_v1_chr5_+_117378510_117378529	1.64125	Hoxd9	ENSMUST00000111975.3|Taok3|ENSMUSG00000061288.14|TAO kinase 3
mm39_v1_chr12_+_117807224_117807250	1.63527	Hoxd9	ENSMUST00000021592.16|Cdca7l|ENSMUSG00000021175.16|cell division cycle associated 7 like
mm39_v1_chrX_-_48886577_48886632	1.63438	Hoxd9	ENSMUST00000033442.14|Igsf1|ENSMUSG00000031111.17|immunoglobulin superfamily, member 1	ENSMUST00000114891.2|Igsf1|ENSMUSG00000031111.17|immunoglobulin superfamily, member 1
mm39_v1_chr1_-_23948764_23948787	1.55215	Hoxd9	ENSMUST00000129254.8|Smap1|ENSMUSG00000026155.14|small ArfGAP 1
mm39_v1_chr2_-_84255602_84255755	1.3922	Hoxd9	ENSMUST00000074262.9|Calcrl|ENSMUSG00000059588.14|calcitonin receptor-like
mm39_v1_chr6_+_38918327_38918342	1.36629	Hoxd9	ENSMUST00000160963.2|Tbxas1|ENSMUSG00000029925.14|thromboxane A synthase 1, platelet
mm39_v1_chr14_+_66378382_66378404	1.34537	Hoxd9	ENSMUST00000022620.11|Chrna2|ENSMUSG00000022041.11|cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)
mm39_v1_chr2_-_151586063_151586125	1.31523	Hoxd9	ENSMUST00000109869.2|Psmf1|ENSMUSG00000032869.16|proteasome (prosome, macropain) inhibitor subunit 1
mm39_v1_chr17_-_78991691_78991781	1.28447	Hoxd9	ENSMUST00000145480.2|Strn|ENSMUSG00000024077.16|striatin, calmodulin binding protein
mm39_v1_chr1_-_138103021_138103049	1.2283	Hoxd9	ENSMUST00000182755.8|Ptprc|ENSMUSG00000026395.17|protein tyrosine phosphatase, receptor type, C	ENSMUST00000193650.2|Ptprc|ENSMUSG00000026395.17|protein tyrosine phosphatase, receptor type, C	ENSMUST00000182283.8|Ptprc|ENSMUSG00000026395.17|protein tyrosine phosphatase, receptor type, C
mm39_v1_chrX_-_133652140_133652178	1.22279	Hoxd9	ENSMUST00000052431.12|Armcx6|ENSMUSG00000050394.15|armadillo repeat containing, X-linked 6
mm39_v1_chr19_-_56536646_56536696	1.21896	Hoxd9	ENSMUST00000182276.2|Dclre1a|ENSMUSG00000025077.14|DNA cross-link repair 1A
mm39_v1_chr2_+_11176891_11176942	1.19296	Hoxd9	ENSMUST00000028118.9|Prkcq|ENSMUSG00000026778.14|protein kinase C, theta
mm39_v1_chr9_-_39515420_39515699	1.16589	Hoxd9	ENSMUST00000042485.11|AW551984|ENSMUSG00000038112.16|expressed sequence AW551984	ENSMUST00000141370.8|AW551984|ENSMUSG00000038112.16|expressed sequence AW551984
mm39_v1_chr1_+_88139678_88139707	1.14061	Hoxd9	ENSMUST00000073049.7|Ugt1a1|ENSMUSG00000089960.2|UDP glucuronosyltransferase 1 family, polypeptide A1
mm39_v1_chr10_+_89580849_89580884	1.12102	Hoxd9	ENSMUST00000020112.7|Uhrf1bp1l|ENSMUSG00000019951.11|UHRF1 (ICBP90) binding protein 1-like
mm39_v1_chr6_-_87510200_87510246	1.09001	Hoxd9	ENSMUST00000113637.9|Arhgap25|ENSMUSG00000030047.15|Rho GTPase activating protein 25	ENSMUST00000071024.7|Arhgap25|ENSMUSG00000030047.15|Rho GTPase activating protein 25
mm39_v1_chr3_-_129834788_129834855	1.0897	Hoxd9	ENSMUST00000168644.3|Sec24b|ENSMUSG00000001052.16|Sec24 related gene family, member B (S. cerevisiae)
mm39_v1_chr6_-_69800923_69800955	1.08832	Hoxd9	ENSMUST00000103368.3|Igkv5-43|ENSMUSG00000094433.3|immunoglobulin kappa chain variable 5-43
mm39_v1_chr16_+_29884153_29884169	1.06152	Hoxd9	ENSMUST00000023171.8|Hes1|ENSMUSG00000022528.9|hes family bHLH transcription factor 1
mm39_v1_chr1_-_97689263_97689391	1.05636	Hoxd9	ENSMUST00000171129.8|Ppip5k2|ENSMUSG00000040648.16|diphosphoinositol pentakisphosphate kinase 2
mm39_v1_chr14_+_43951187_43951191	1.04128	Hoxd9	ENSMUST00000094051.6|Gm7324|ENSMUSG00000049235.9|predicted gene 7324
mm39_v1_chrX_-_133652080_133652139	1.03737	Hoxd9	ENSMUST00000113194.8|Armcx6|ENSMUSG00000050394.15|armadillo repeat containing, X-linked 6
mm39_v1_chr4_-_129472328_129472353	1.03427	Hoxd9	ENSMUST00000052835.9|Fam167b|ENSMUSG00000050493.9|family with sequence similarity 167, member B
mm39_v1_chr19_+_56536685_56536716	1.03148	Hoxd9	ENSMUST00000071423.7|Nhlrc2|ENSMUSG00000025078.10|NHL repeat containing 2
mm39_v1_chr5_-_18054702_18054733	1.01081	Hoxd9	ENSMUST00000165232.8|Cd36|ENSMUSG00000002944.16|CD36 molecule
mm39_v1_chr10_-_93727003_93727064	0.980919	Hoxd9	ENSMUST00000180840.8|Metap2|ENSMUSG00000036112.16|methionine aminopeptidase 2
mm39_v1_chr1_-_154975376_154975382	0.959366	Hoxd9	ENSMUST00000055322.6|Ier5|ENSMUSG00000056708.6|immediate early response 5
mm39_v1_chr12_-_41536430_41536430	0.911011	Hoxd9	ENSMUST00000043884.6|Lrrn3|ENSMUSG00000036295.6|leucine rich repeat protein 3, neuronal
mm39_v1_chr7_+_120450406_120450417	0.893829	Hoxd9	ENSMUST00000143322.9|Eef2k|ENSMUSG00000035064.18|eukaryotic elongation factor-2 kinase	ENSMUST00000106488.3|Eef2k|ENSMUSG00000035064.18|eukaryotic elongation factor-2 kinase
mm39_v1_chr19_+_45433899_45433982	0.872907	Hoxd9	ENSMUST00000224478.2|Btrc|ENSMUSG00000025217.16|beta-transducin repeat containing protein
mm39_v1_chr7_+_127661807_127661818	0.86783	Hoxd9	ENSMUST00000064821.14|Itgam|ENSMUSG00000030786.19|integrin alpha M
mm39_v1_chr15_-_37459570_37459650	0.86364	Hoxd9	ENSMUST00000119730.8|Ncald|ENSMUSG00000051359.16|neurocalcin delta	ENSMUST00000120746.8|Ncald|ENSMUSG00000051359.16|neurocalcin delta
mm39_v1_chrX_-_10083157_10083160	0.857071	Hoxd9	ENSMUST00000072393.9|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000044598.13|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000073392.11|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000115533.8|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000115532.2|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator
mm39_v1_chr1_-_138102972_138103012	0.845381	Hoxd9	ENSMUST00000195533.6|Ptprc|ENSMUSG00000026395.17|protein tyrosine phosphatase, receptor type, C	ENSMUST00000183301.8|Ptprc|ENSMUSG00000026395.17|protein tyrosine phosphatase, receptor type, C
mm39_v1_chr6_-_68840015_68840032	0.835477	Hoxd9	ENSMUST00000103336.2|Igkv1-88|ENSMUSG00000076535.2|immunoglobulin kappa chain variable 1-88
mm39_v1_chrX_-_133442596_133442649	0.81448	Hoxd9	ENSMUST00000054213.5|Timm8a1|ENSMUSG00000048007.5|translocase of inner mitochondrial membrane 8A1
mm39_v1_chr11_+_23234644_23234669	0.803483	Hoxd9	ENSMUST00000150750.3|Xpo1|ENSMUSG00000020290.15|exportin 1
mm39_v1_chrX_+_55493325_55493325	0.7819	Hoxd9	ENSMUST00000079663.7|Gm2174|ENSMUSG00000058932.7|predicted gene 2174
mm39_v1_chr6_+_57679621_57679644	0.747772	Hoxd9	ENSMUST00000050077.15|Lancl2|ENSMUSG00000062190.13|LanC (bacterial lantibiotic synthetase component C)-like 2
mm39_v1_chr19_-_56536443_56536480	0.744275	Hoxd9	ENSMUST00000182059.2|Dclre1a|ENSMUSG00000025077.14|DNA cross-link repair 1A
mm39_v1_chr12_-_113589576_113589657	0.724974	Hoxd9	ENSMUST00000103446.2|Ighv5-6|ENSMUSG00000094951.2|immunoglobulin heavy variable 5-6
mm39_v1_chr1_-_160079007_160079088	0.717403	Hoxd9	ENSMUST00000191909.6|Rabgap1l|ENSMUSG00000026721.17|RAB GTPase activating protein 1-like
mm39_v1_chr5_+_145282064_145282097	0.713431	Hoxd9	ENSMUST00000079268.9|Cyp3a57|ENSMUSG00000070419.12|cytochrome P450, family 3, subfamily a, polypeptide 57
mm39_v1_chr4_+_5724305_5724357	0.708093	Hoxd9	ENSMUST00000108380.2|Fam110b|ENSMUSG00000049119.15|family with sequence similarity 110, member B
mm39_v1_chr12_-_118265103_118265162	0.693221	Hoxd9	ENSMUST00000222314.2|Sp4|ENSMUSG00000025323.11|trans-acting transcription factor 4	ENSMUST00000026367.11|Sp4|ENSMUSG00000025323.11|trans-acting transcription factor 4
mm39_v1_chr6_+_70192384_70192389	0.67552	Hoxd9	ENSMUST00000103383.3|Igkv6-25|ENSMUSG00000094930.3|immunoglobulin kappa chain variable 6-25
mm39_v1_chr3_+_5815863_5815866	0.653834	Hoxd9	ENSMUST00000192045.2|Gm8797|ENSMUSG00000103034.2|predicted pseudogene 8797
mm39_v1_chr18_+_42669322_42669358	0.627993	Hoxd9	ENSMUST00000236418.2|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)
mm39_v1_chr6_+_83985684_83985749	0.610151	Hoxd9	ENSMUST00000203803.3|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000204591.3|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000113823.8|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000153860.4|Dysf|ENSMUSG00000033788.16|dysferlin
mm39_v1_chr1_-_128030148_128030223	0.583013	Hoxd9	ENSMUST00000086614.12|Zranb3|ENSMUSG00000036086.17|zinc finger, RAN-binding domain containing 3
mm39_v1_chr11_+_67061908_67062046	0.570974	Hoxd9	ENSMUST00000018641.8|Myh2|ENSMUSG00000033196.18|myosin, heavy polypeptide 2, skeletal muscle, adult
mm39_v1_chr1_+_180158035_180158058	0.559712	Hoxd9	ENSMUST00000070181.7|Itpkb|ENSMUSG00000038855.11|inositol 1,4,5-trisphosphate 3-kinase B
mm39_v1_chr10_+_74872898_74872931	0.559476	Hoxd9	ENSMUST00000147802.9|Rab36|ENSMUSG00000020175.16|RAB36, member RAS oncogene family	ENSMUST00000020391.13|Rab36|ENSMUSG00000020175.16|RAB36, member RAS oncogene family	ENSMUST00000234625.2|Rab36|ENSMUSG00000020175.16|RAB36, member RAS oncogene family
mm39_v1_chr6_+_48514518_48514549	0.556156	Hoxd9	ENSMUST00000040361.8|Atp6v0e2|ENSMUSG00000039347.8|ATPase, H+ transporting, lysosomal V0 subunit E2
mm39_v1_chr18_+_31922173_31922224	0.534597	Hoxd9	ENSMUST00000025106.5|Polr2d|ENSMUSG00000024258.5|polymerase (RNA) II (DNA directed) polypeptide D	ENSMUST00000234146.2|Polr2d|ENSMUSG00000024258.5|polymerase (RNA) II (DNA directed) polypeptide D
mm39_v1_chr10_-_129107354_129107354	0.498121	Hoxd9	ENSMUST00000204573.3|Olfr777|ENSMUSG00000062914.4|olfactory receptor 777
mm39_v1_chr2_+_91357100_91357112	0.486844	Hoxd9	ENSMUST00000111338.10|Ckap5|ENSMUSG00000040549.17|cytoskeleton associated protein 5
mm39_v1_chr3_+_32490525_32490525	0.486214	Hoxd9	ENSMUST00000108242.2|Pik3ca|ENSMUSG00000027665.14|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
mm39_v1_chr5_-_62923463_62923615	0.457932	Hoxd9	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr5_-_100521343_100521393	0.450759	Hoxd9	ENSMUST00000182433.8|Sec31a|ENSMUSG00000035325.17|Sec31 homolog A (S. cerevisiae)
mm39_v1_chr3_+_103078971_103079041	0.450567	Hoxd9	ENSMUST00000005830.15|Bcas2|ENSMUSG00000005687.15|breast carcinoma amplified sequence 2
mm39_v1_chr8_-_41469332_41469360	0.446092	Hoxd9	ENSMUST00000131965.2|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1
mm39_v1_chr14_-_75991903_75992003	0.43475	Hoxd9	ENSMUST00000049168.9|Cog3|ENSMUSG00000034893.10|component of oligomeric golgi complex 3
mm39_v1_chr16_-_22847760_22847775	0.40939	Hoxd9	ENSMUST00000039338.13|Kng2|ENSMUSG00000060459.15|kininogen 2
mm39_v1_chr8_+_85583611_85583665	0.389213	Hoxd9	ENSMUST00000003906.13|Farsa|ENSMUSG00000003808.19|phenylalanyl-tRNA synthetase, alpha subunit	ENSMUST00000109754.2|Farsa|ENSMUSG00000003808.19|phenylalanyl-tRNA synthetase, alpha subunit
mm39_v1_chr11_+_31823096_31823275	0.384846	Hoxd9	ENSMUST00000155278.2|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chr7_+_100435548_100435582	0.374096	Hoxd9	ENSMUST00000216021.2|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A
mm39_v1_chr16_-_22847829_22847856	0.367419	Hoxd9	ENSMUST00000100046.9|Kng2|ENSMUSG00000060459.15|kininogen 2
mm39_v1_chr1_-_171854818_171854880	0.347994	Hoxd9	ENSMUST00000138714.2|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000027837.13|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000111264.8|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2
mm39_v1_chr5_-_104125192_104125219	0.338189	Hoxd9	ENSMUST00000120320.8|Hsd17b13|ENSMUSG00000034528.16|hydroxysteroid (17-beta) dehydrogenase 13
mm39_v1_chr11_+_67061837_67061866	0.334556	Hoxd9	ENSMUST00000170159.8|Myh2|ENSMUSG00000033196.18|myosin, heavy polypeptide 2, skeletal muscle, adult
mm39_v1_chr19_-_57185928_57185969	0.333721	Hoxd9	ENSMUST00000111544.8|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr6_+_108771840_108771885	0.333177	Hoxd9	ENSMUST00000204483.2|Arl8b|ENSMUSG00000030105.9|ADP-ribosylation factor-like 8B
mm39_v1_chr4_-_43710231_43710255	0.324395	Hoxd9	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chr2_+_83642910_83642987	0.310752	Hoxd9	ENSMUST00000051454.4|Fam171b|ENSMUSG00000048388.4|family with sequence similarity 171, member B
mm39_v1_chr19_-_57185988_57186063	0.303421	Hoxd9	ENSMUST00000099294.9|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr14_-_123151162_123151176	0.303183	Hoxd9	ENSMUST00000160401.8|Ggact|ENSMUSG00000041625.16|gamma-glutamylamine cyclotransferase
mm39_v1_chr2_-_85966272_85966272	0.300852	Hoxd9	ENSMUST00000216566.3|Olfr1039|ENSMUSG00000075204.4|olfactory receptor 1039	ENSMUST00000214364.2|Olfr1039|ENSMUSG00000075204.4|olfactory receptor 1039
mm39_v1_chr6_-_98319684_98319715	0.283957	Hoxd9	ENSMUST00000164491.3|Mdfic2|ENSMUSG00000090667.3|MyoD family inhibitor domain containing 2
mm39_v1_chr16_-_22847808_22847826	0.278091	Hoxd9	ENSMUST00000115349.9|Kng2|ENSMUSG00000060459.15|kininogen 2
mm39_v1_chr10_-_18890281_18890337	0.277365	Hoxd9	ENSMUST00000146388.2|Tnfaip3|ENSMUSG00000019850.12|tumor necrosis factor, alpha-induced protein 3
mm39_v1_chr7_-_84328553_84328609	0.258756	Hoxd9	ENSMUST00000069537.3|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000207865.2|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000178385.9|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000208782.2|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6
mm39_v1_chr17_+_75742881_75742926	0.25769	Hoxd9	ENSMUST00000164192.9|Rasgrp3|ENSMUSG00000071042.13|RAS, guanyl releasing protein 3
mm39_v1_chr16_-_65359406_65359533	0.253979	Hoxd9	ENSMUST00000231259.2|Chmp2b|ENSMUSG00000004843.8|charged multivesicular body protein 2B
mm39_v1_chr3_+_32490300_32490300	0.25158	Hoxd9	ENSMUST00000029201.14|Pik3ca|ENSMUSG00000027665.14|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
mm39_v1_chr3_+_113824181_113824220	0.248688	Hoxd9	ENSMUST00000123619.8|Col11a1|ENSMUSG00000027966.21|collagen, type XI, alpha 1	ENSMUST00000092155.12|Col11a1|ENSMUSG00000027966.21|collagen, type XI, alpha 1
mm39_v1_chr5_-_69748126_69748171	0.246037	Hoxd9	ENSMUST00000166298.8|Gnpda2|ENSMUSG00000029209.16|glucosamine-6-phosphate deaminase 2
mm39_v1_chr8_+_66838927_66838980	0.245896	Hoxd9	ENSMUST00000039540.12|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1	ENSMUST00000110253.3|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1
mm39_v1_chr1_-_140111138_140111153	0.242	Hoxd9	ENSMUST00000111976.9|Cfh|ENSMUSG00000026365.16|complement component factor h	ENSMUST00000066859.13|Cfh|ENSMUSG00000026365.16|complement component factor h
mm39_v1_chrX_+_41241049_41241072	0.238896	Hoxd9	ENSMUST00000128799.3|Stag2|ENSMUSG00000025862.15|stromal antigen 2
mm39_v1_chr3_-_49711706_49711758	0.234197	Hoxd9	ENSMUST00000191794.2|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr2_-_45000389_45000766	0.234035	Hoxd9	ENSMUST00000201804.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000028229.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000202187.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000153561.6|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201490.2|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr2_-_37537224_37537297	0.229203	Hoxd9	ENSMUST00000028279.10|Strbp|ENSMUSG00000026915.17|spermatid perinuclear RNA binding protein
mm39_v1_chr16_+_21644692_21644796	0.211058	Hoxd9	ENSMUST00000232240.2|Map3k13|ENSMUSG00000033618.8|mitogen-activated protein kinase kinase kinase 13
mm39_v1_chr3_+_30656204_30656246	0.209121	Hoxd9	ENSMUST00000192715.6|Mynn|ENSMUSG00000037730.14|myoneurin
mm39_v1_chr7_+_45271229_45271249	0.197518	Hoxd9	ENSMUST00000033100.5|Izumo1|ENSMUSG00000064158.7|izumo sperm-egg fusion 1
mm39_v1_chr6_+_18848600_18848692	0.197382	Hoxd9	ENSMUST00000201141.3|Lsm8|ENSMUSG00000044155.12|LSM8 homolog, U6 small nuclear RNA associated
mm39_v1_chr13_+_49697919_49698009	0.194219	Hoxd9	ENSMUST00000177948.2|Aspn|ENSMUSG00000021388.15|asporin	ENSMUST00000021820.14|Aspn|ENSMUSG00000021388.15|asporin
mm39_v1_chr3_+_67799510_67799565	0.177786	Hoxd9	ENSMUST00000063263.5|Iqcj|ENSMUSG00000051777.7|IQ motif containing J	ENSMUST00000182006.4|Iqschfp|ENSMUSG00000102422.2|Iqcj and Schip1 fusion protein
mm39_v1_chr14_-_56137697_56137717	0.169981	Hoxd9	ENSMUST00000111325.5|Sdr39u1|ENSMUSG00000022223.10|short chain dehydrogenase/reductase family 39U, member 1
mm39_v1_chr1_-_140111018_140111070	0.169275	Hoxd9	ENSMUST00000192880.6|Cfh|ENSMUSG00000026365.16|complement component factor h	ENSMUST00000111977.8|Cfh|ENSMUSG00000026365.16|complement component factor h
mm39_v1_chr2_-_152422220_152422235	0.164204	Hoxd9	ENSMUST00000053180.4|Defb19|ENSMUSG00000050645.4|defensin beta 19
mm39_v1_chr3_+_35808269_35808288	0.157825	Hoxd9	ENSMUST00000029257.15|Atp11b|ENSMUSG00000037400.18|ATPase, class VI, type 11B
mm39_v1_chrX_+_113384008_113384051	0.147737	Hoxd9	ENSMUST00000113371.8|Klhl4|ENSMUSG00000025597.14|kelch-like 4	ENSMUST00000040504.12|Klhl4|ENSMUSG00000025597.14|kelch-like 4
mm39_v1_chr3_-_49711765_49711772	0.143822	Hoxd9	ENSMUST00000035931.13|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr2_-_76700830_76700955	0.140999	Hoxd9	ENSMUST00000138542.2|Ttn|ENSMUSG00000051747.16|titin
mm39_v1_chr1_-_82746169_82746186	0.138042	Hoxd9	ENSMUST00000027331.3|Tm4sf20|ENSMUSG00000026149.3|transmembrane 4 L six family member 20
mm39_v1_chr3_-_144525255_144525255	0.136818	Hoxd9	ENSMUST00000029929.12|Clca3a2|ENSMUSG00000028262.14|chloride channel accessory 3A2
mm39_v1_chr6_+_149226891_149226956	0.132161	Hoxd9	ENSMUST00000189837.2|Resf1|ENSMUSG00000032712.17|retroelement silencing factor 1
mm39_v1_chr19_+_34078333_34078399	0.128886	Hoxd9	ENSMUST00000025685.8|Lipm|ENSMUSG00000056078.7|lipase, family member M
mm39_v1_chr5_-_69699932_69699963	0.11992	Hoxd9	ENSMUST00000202423.2|Yipf7|ENSMUSG00000029158.10|Yip1 domain family, member 7
mm39_v1_chr5_-_21087023_21087122	0.116611	Hoxd9	ENSMUST00000118174.8|Phtf2|ENSMUSG00000039987.16|putative homeodomain transcription factor 2
mm39_v1_chr9_-_60594742_60594955	0.104249	Hoxd9	ENSMUST00000114032.8|Lrrc49|ENSMUSG00000047766.16|leucine rich repeat containing 49	ENSMUST00000166168.8|Lrrc49|ENSMUSG00000047766.16|leucine rich repeat containing 49	ENSMUST00000132366.2|Lrrc49|ENSMUSG00000047766.16|leucine rich repeat containing 49
mm39_v1_chr4_+_109092610_109092610	0.103333	Hoxd9	ENSMUST00000106628.8|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr19_+_39980868_39980868	0.0917543	Hoxd9	ENSMUST00000049178.3|Cyp2c37|ENSMUSG00000042248.5|cytochrome P450, family 2. subfamily c, polypeptide 37
mm39_v1_chr3_-_75177378_75177392	0.0910774	Hoxd9	ENSMUST00000039047.5|Serpini2|ENSMUSG00000034139.5|serine (or cysteine) peptidase inhibitor, clade I, member 2
mm39_v1_chr9_-_18297277_18297364	0.0892639	Hoxd9	ENSMUST00000166825.8|Naalad2|ENSMUSG00000043943.15|N-acetylated alpha-linked acidic dipeptidase 2
mm39_v1_chr6_+_83985495_83985572	0.0830965	Hoxd9	ENSMUST00000113821.8|Dysf|ENSMUSG00000033788.16|dysferlin
mm39_v1_chr13_+_93441447_93441786	0.0815021	Hoxd9	ENSMUST00000109497.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109498.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000060490.11|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109492.9|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109496.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109495.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1
mm39_v1_chr10_+_40559249_40559278	0.0813623	Hoxd9	ENSMUST00000058747.4|Mettl24|ENSMUSG00000045555.4|methyltransferase like 24
mm39_v1_chr19_-_57185861_57185893	0.0765851	Hoxd9	ENSMUST00000111550.8|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr2_-_88534814_88534941	0.0736153	Hoxd9	ENSMUST00000216928.2|Olfr1196|ENSMUSG00000075120.5|olfactory receptor 1196	ENSMUST00000216977.2|Olfr1196|ENSMUSG00000075120.5|olfactory receptor 1196
mm39_v1_chr5_+_136982100_136982260	0.0679201	Hoxd9	ENSMUST00000111094.8|Fis1|ENSMUSG00000019054.14|fission, mitochondrial 1	ENSMUST00000111097.8|Fis1|ENSMUSG00000019054.14|fission, mitochondrial 1
mm39_v1_chr2_-_115895202_115895231	0.0649109	Hoxd9	ENSMUST00000110906.9|Meis2|ENSMUSG00000027210.21|Meis homeobox 2
mm39_v1_chr10_+_129153986_129153986	0.0591296	Hoxd9	ENSMUST00000215503.2|Olfr780|ENSMUSG00000049573.4|olfactory receptor 780
mm39_v1_chr2_+_85648823_85648823	0.0583152	Hoxd9	ENSMUST00000214416.2|Olfr1018|ENSMUSG00000043892.4|olfactory receptor 1018
mm39_v1_chr7_+_107679062_107679062	0.0516212	Hoxd9	ENSMUST00000213601.2|Olfr481|ENSMUSG00000054236.7|olfactory receptor 481
mm39_v1_chr6_+_41095752_41095785	0.0456732	Hoxd9	ENSMUST00000103269.3|Trbv12-2|ENSMUSG00000094525.3|T cell receptor beta, variable 12-2
mm39_v1_chr4_+_109092459_109092459	0.0407955	Hoxd9	ENSMUST00000106631.9|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chrM_+_11735_11751	0.0355641	Hoxd9	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm39_v1_chr2_-_87467879_87467879	0.029342	Hoxd9	ENSMUST00000216082.2|Olfr1132|ENSMUSG00000068818.6|olfactory receptor 1132
mm39_v1_chr10_-_81102740_81102770	0.0240419	Hoxd9	ENSMUST00000046114.5|Mrpl54|ENSMUSG00000034932.5|mitochondrial ribosomal protein L54
mm39_v1_chr13_-_100453124_100453124	0.0200764	Hoxd9	ENSMUST00000042220.3|Naip6|ENSMUSG00000078942.11|NLR family, apoptosis inhibitory protein 6
mm39_v1_chr3_+_138058139_138058139	0.0188516	Hoxd9	ENSMUST00000090166.5|Adh6b|ENSMUSG00000074206.8|alcohol dehydrogenase 6B (class V)
mm39_v1_chr9_+_43222104_43222145	0.0182543	Hoxd9	ENSMUST00000034511.7|Trim29|ENSMUSG00000032013.7|tripartite motif-containing 29
mm39_v1_chr18_+_32200781_32200864	0.0111721	Hoxd9	ENSMUST00000025243.5|Iws1|ENSMUSG00000024384.5|IWS1, SUPT6 interacting protein	ENSMUST00000212675.2|Iws1|ENSMUSG00000024384.5|IWS1, SUPT6 interacting protein
mm39_v1_chr17_+_78815493_78815601	0.00803875	Hoxd9	ENSMUST00000024880.11|Vit|ENSMUSG00000024076.11|vitrin	ENSMUST00000232859.2|Vit|ENSMUSG00000024076.11|vitrin
mm39_v1_chr8_-_62576140_62576157	0.00452428	Hoxd9	ENSMUST00000034052.14|Anxa10|ENSMUSG00000031635.15|annexin A10	ENSMUST00000034054.9|Anxa10|ENSMUSG00000031635.15|annexin A10
mm39_v1_chr2_+_88470886_88470941	0.00448329	Hoxd9	ENSMUST00000217379.2|Olfr1191-ps1|ENSMUSG00000081948.5|olfactory receptor 1191, pseudogene 1	ENSMUST00000120598.3|Olfr1191-ps1|ENSMUSG00000081948.5|olfactory receptor 1191, pseudogene 1
mm39_v1_chr10_+_23952398_23952398	0.00436539	Hoxd9	ENSMUST00000051133.6|Taar8a|ENSMUSG00000096442.2|trace amine-associated receptor 8A
