mm39_v1_chr15_-_103159892_103160081	4.60303	Nanog	ENSMUST00000133600.8|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2	ENSMUST00000134554.2|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2	ENSMUST00000156927.8|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2
mm39_v1_chr9_-_44253588_44253610	4.53037	Nanog	ENSMUST00000215091.2|Hmbs|ENSMUSG00000032126.17|hydroxymethylbilane synthase
mm39_v1_chr17_+_41121979_41122056	4.2961	Nanog	ENSMUST00000024721.8|Rhag|ENSMUSG00000023926.9|Rhesus blood group-associated A glycoprotein	ENSMUST00000233740.2|Rhag|ENSMUSG00000023926.9|Rhesus blood group-associated A glycoprotein
mm39_v1_chr19_-_11618165_11618174	4.04886	Nanog	ENSMUST00000186023.7|Ms4a3|ENSMUSG00000024681.12|membrane-spanning 4-domains, subfamily A, member 3
mm39_v1_chr7_+_121758646_121758804	4.0104	Nanog	ENSMUST00000033154.8|Plk1|ENSMUSG00000030867.8|polo like kinase 1	ENSMUST00000205901.2|Plk1|ENSMUSG00000030867.8|polo like kinase 1
mm39_v1_chr9_+_65797519_65797625	3.961	Nanog	ENSMUST00000045802.7|Pclaf|ENSMUSG00000040204.7|PCNA clamp associated factor
mm39_v1_chr19_-_11618192_11618203	3.68865	Nanog	ENSMUST00000112984.4|Ms4a3|ENSMUSG00000024681.12|membrane-spanning 4-domains, subfamily A, member 3
mm39_v1_chr1_-_132318039_132318105	3.43172	Nanog	ENSMUST00000132435.2|Tmcc2|ENSMUSG00000042066.17|transmembrane and coiled-coil domains 2
mm39_v1_chr15_-_103160082_103160127	2.97725	Nanog	ENSMUST00000149111.8|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2	ENSMUST00000132836.8|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2
mm39_v1_chr5_+_33815466_33815515	2.93866	Nanog	ENSMUST00000074849.13|Tacc3|ENSMUSG00000037313.17|transforming, acidic coiled-coil containing protein 3	ENSMUST00000079534.11|Tacc3|ENSMUSG00000037313.17|transforming, acidic coiled-coil containing protein 3	ENSMUST00000201633.2|Tacc3|ENSMUSG00000037313.17|transforming, acidic coiled-coil containing protein 3
mm39_v1_chr9_-_44253630_44253678	2.87566	Nanog	ENSMUST00000097558.5|Hmbs|ENSMUSG00000032126.17|hydroxymethylbilane synthase
mm39_v1_chr7_-_6733411_6733429	2.72873	Nanog	ENSMUST00000239104.2|Peg3|ENSMUSG00000002265.18|paternally expressed 3	ENSMUST00000051209.11|Peg3|ENSMUSG00000002265.18|paternally expressed 3
mm39_v1_chr9_-_20871081_20871184	2.68481	Nanog	ENSMUST00000177754.9|Dnmt1|ENSMUSG00000004099.17|DNA methyltransferase (cytosine-5) 1
mm39_v1_chr1_-_75110511_75110534	2.45991	Nanog	ENSMUST00000027405.6|Slc23a3|ENSMUSG00000026205.9|solute carrier family 23 (nucleobase transporters), member 3
mm39_v1_chrX_+_8137881_8138029	2.45217	Nanog	ENSMUST00000115590.2|Slc38a5|ENSMUSG00000031170.15|solute carrier family 38, member 5
mm39_v1_chr2_+_164790139_164790165	2.41344	Nanog	ENSMUST00000017881.3|Mmp9|ENSMUSG00000017737.3|matrix metallopeptidase 9
mm39_v1_chr19_-_9876815_9876915	2.22638	Nanog	ENSMUST00000237147.2|Incenp|ENSMUSG00000024660.10|inner centromere protein	ENSMUST00000025562.9|Incenp|ENSMUSG00000024660.10|inner centromere protein
mm39_v1_chr6_+_124806541_124806651	2.16163	Nanog	ENSMUST00000024270.14|Cdca3|ENSMUSG00000023505.14|cell division cycle associated 3
mm39_v1_chr15_-_51855073_51855159	2.12174	Nanog	ENSMUST00000022927.11|Rad21|ENSMUSG00000022314.11|RAD21 cohesin complex component
mm39_v1_chr15_+_80456775_80456802	2.03857	Nanog	ENSMUST00000229980.2|Grap2|ENSMUSG00000042351.10|GRB2-related adaptor protein 2
mm39_v1_chr7_-_133304244_133304345	1.9913	Nanog	ENSMUST00000209636.2|Uros|ENSMUSG00000030979.14|uroporphyrinogen III synthase	ENSMUST00000153698.3|Uros|ENSMUSG00000030979.14|uroporphyrinogen III synthase
mm39_v1_chr3_+_87989278_87989358	1.98713	Nanog	ENSMUST00000071812.11|Iqgap3|ENSMUSG00000028068.15|IQ motif containing GTPase activating protein 3
mm39_v1_chr7_+_79309938_79309949	1.89433	Nanog	ENSMUST00000035977.9|Ticrr|ENSMUSG00000046591.11|TOPBP1-interacting checkpoint and replication regulator
mm39_v1_chr6_+_125529911_125529943	1.86324	Nanog	ENSMUST00000112254.8|Vwf|ENSMUSG00000001930.18|Von Willebrand factor	ENSMUST00000112253.6|Vwf|ENSMUSG00000001930.18|Von Willebrand factor
mm39_v1_chr18_-_78166539_78166553	1.83083	Nanog	ENSMUST00000160292.8|Slc14a1|ENSMUSG00000059336.15|solute carrier family 14 (urea transporter), member 1
mm39_v1_chr6_+_124806506_124806540	1.77952	Nanog	ENSMUST00000150120.8|Cdca3|ENSMUSG00000023505.14|cell division cycle associated 3
mm39_v1_chr11_-_100986192_100986266	1.68758	Nanog	ENSMUST00000019447.15|Psmc3ip|ENSMUSG00000019303.15|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
mm39_v1_chr2_-_153079828_153079854	1.65688	Nanog	ENSMUST00000109795.2|Plagl2|ENSMUSG00000051413.18|pleiomorphic adenoma gene-like 2
mm39_v1_chr8_+_106024294_106024367	1.65606	Nanog	ENSMUST00000015003.10|E2f4|ENSMUSG00000014859.10|E2F transcription factor 4
mm39_v1_chr7_+_43086432_43086497	1.65364	Nanog	ENSMUST00000070518.4|Nkg7|ENSMUSG00000004612.10|natural killer cell group 7 sequence
mm39_v1_chr1_-_45542442_45542442	1.64389	Nanog	ENSMUST00000086430.5|Col5a2|ENSMUSG00000026042.17|collagen, type V, alpha 2
mm39_v1_chr2_-_151586063_151586125	1.60388	Nanog	ENSMUST00000109869.2|Psmf1|ENSMUSG00000032869.16|proteasome (prosome, macropain) inhibitor subunit 1
mm39_v1_chr5_-_138170644_138170684	1.59439	Nanog	ENSMUST00000000505.16|Mcm7|ENSMUSG00000029730.17|minichromosome maintenance complex component 7
mm39_v1_chr7_+_110368037_110368118	1.55597	Nanog	ENSMUST00000213373.2|Ampd3|ENSMUSG00000005686.18|adenosine monophosphate deaminase 3
mm39_v1_chr7_-_142233270_142233463	1.52834	Nanog	ENSMUST00000162317.2|Ins2|ENSMUSG00000000215.12|insulin II	ENSMUST00000125933.2|Ins2|ENSMUSG00000000215.12|insulin II	ENSMUST00000105931.8|Ins2|ENSMUSG00000000215.12|insulin II	ENSMUST00000105930.8|Ins2|ENSMUSG00000000215.12|insulin II	ENSMUST00000105933.8|Ins2|ENSMUSG00000000215.12|insulin II	ENSMUST00000105932.2|Ins2|ENSMUSG00000000215.12|insulin II	ENSMUST00000000220.3|Ins2|ENSMUSG00000000215.12|insulin II
mm39_v1_chrX_+_133208833_133208957	1.50998	Nanog	ENSMUST00000081064.12|Cenpi|ENSMUSG00000031262.13|centromere protein I	ENSMUST00000101251.8|Cenpi|ENSMUSG00000031262.13|centromere protein I	ENSMUST00000129782.2|Cenpi|ENSMUSG00000031262.13|centromere protein I
mm39_v1_chr4_-_49597837_49597876	1.46867	Nanog	ENSMUST00000042750.3|Pgap4|ENSMUSG00000039611.3|post-GPI attachment to proteins GalNAc transferase 4
mm39_v1_chr17_-_25946370_25946399	1.4589	Nanog	ENSMUST00000170070.3|Chtf18|ENSMUSG00000019214.15|CTF18, chromosome transmission fidelity factor 18	ENSMUST00000048054.14|Chtf18|ENSMUSG00000019214.15|CTF18, chromosome transmission fidelity factor 18
mm39_v1_chr3_-_144466602_144466628	1.43467	Nanog	ENSMUST00000059091.6|Clca3a1|ENSMUSG00000056025.13|chloride channel accessory 3A1
mm39_v1_chr15_-_66703471_66703516	1.40085	Nanog	ENSMUST00000164163.8|Sla|ENSMUSG00000022372.15|src-like adaptor
mm39_v1_chr19_-_9876745_9876765	1.37449	Nanog	ENSMUST00000237725.2|Incenp|ENSMUSG00000024660.10|inner centromere protein
mm39_v1_chr7_+_13467422_13467437	1.34874	Nanog	ENSMUST00000086148.8|Sult2a2|ENSMUSG00000070811.7|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2
mm39_v1_chr7_-_115445352_115445389	1.34575	Nanog	ENSMUST00000206369.2|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr18_+_36661198_36661210	1.32634	Nanog	ENSMUST00000237174.2|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9	ENSMUST00000236124.2|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9	ENSMUST00000236779.2|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9	ENSMUST00000235181.2|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9	ENSMUST00000074298.13|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9	ENSMUST00000115694.3|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9	ENSMUST00000236126.2|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9
mm39_v1_chr11_-_20282684_20282770	1.3004	Nanog	ENSMUST00000004634.7|Slc1a4|ENSMUSG00000020142.13|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	ENSMUST00000109594.8|Slc1a4|ENSMUSG00000020142.13|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm39_v1_chr7_+_43086554_43086601	1.29605	Nanog	ENSMUST00000206741.2|Nkg7|ENSMUSG00000004612.10|natural killer cell group 7 sequence
mm39_v1_chr3_+_90520408_90520612	1.28681	Nanog	ENSMUST00000198128.2|S100a6|ENSMUSG00000001025.9|S100 calcium binding protein A6 (calcyclin)
mm39_v1_chr14_+_43951187_43951191	1.27455	Nanog	ENSMUST00000094051.6|Gm7324|ENSMUSG00000049235.9|predicted gene 7324
mm39_v1_chr10_+_58230203_58230217	1.25489	Nanog	ENSMUST00000105468.2|Lims1|ENSMUSG00000019920.19|LIM and senescent cell antigen-like domains 1
mm39_v1_chr14_+_26722319_26722463	1.24114	Nanog	ENSMUST00000035433.10|Hesx1|ENSMUSG00000040726.11|homeobox gene expressed in ES cells
mm39_v1_chr5_+_118165808_118165869	1.22431	Nanog	ENSMUST00000031304.14|Tesc|ENSMUSG00000029359.14|tescalcin
mm39_v1_chrX_+_47235313_47235413	1.21363	Nanog	ENSMUST00000033427.7|Sash3|ENSMUSG00000031101.7|SAM and SH3 domain containing 3
mm39_v1_chr6_+_41331039_41331119	1.15887	Nanog	ENSMUST00000072103.7|Try10|ENSMUSG00000071521.5|trypsin 10
mm39_v1_chr10_+_58230183_58230202	1.15168	Nanog	ENSMUST00000020077.11|Lims1|ENSMUSG00000019920.19|LIM and senescent cell antigen-like domains 1
mm39_v1_chr5_+_110987839_110987888	1.11783	Nanog	ENSMUST00000200172.2|Chek2|ENSMUSG00000029521.8|checkpoint kinase 2	ENSMUST00000066160.3|Chek2|ENSMUSG00000029521.8|checkpoint kinase 2
mm39_v1_chrX_+_162694397_162694435	1.09233	Nanog	ENSMUST00000140845.2|Ap1s2|ENSMUSG00000031367.16|adaptor-related protein complex 1, sigma 2 subunit
mm39_v1_chr7_-_115445315_115445347	1.06419	Nanog	ENSMUST00000166207.3|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr11_-_40624200_40624269	1.0487	Nanog	ENSMUST00000020579.9|Hmmr|ENSMUSG00000020330.17|hyaluronan mediated motility receptor (RHAMM)
mm39_v1_chr4_+_125918333_125918348	1.0445	Nanog	ENSMUST00000106162.8|Csf3r|ENSMUSG00000028859.15|colony stimulating factor 3 receptor (granulocyte)
mm39_v1_chr9_+_69919822_69919877	1.02317	Nanog	ENSMUST00000118198.8|Gtf2a2|ENSMUSG00000033543.18|general transcription factor II A, 2	ENSMUST00000119905.8|Gtf2a2|ENSMUSG00000033543.18|general transcription factor II A, 2	ENSMUST00000119413.8|Gtf2a2|ENSMUSG00000033543.18|general transcription factor II A, 2	ENSMUST00000140305.8|Gtf2a2|ENSMUSG00000033543.18|general transcription factor II A, 2	ENSMUST00000122087.8|Gtf2a2|ENSMUSG00000033543.18|general transcription factor II A, 2
mm39_v1_chr15_+_44320918_44320949	1.01599	Nanog	ENSMUST00000038336.12|Pkhd1l1|ENSMUSG00000038725.14|polycystic kidney and hepatic disease 1-like 1	ENSMUST00000166957.2|Pkhd1l1|ENSMUSG00000038725.14|polycystic kidney and hepatic disease 1-like 1	ENSMUST00000209244.2|Pkhd1l1|ENSMUSG00000038725.14|polycystic kidney and hepatic disease 1-like 1
mm39_v1_chr14_-_99231754_99231776	0.987771	Nanog	ENSMUST00000081987.5|Rpl36a-ps1|ENSMUSG00000060377.5|ribosomal protein L36A, pseudogene 1
mm39_v1_chr13_+_51799268_51799342	0.979602	Nanog	ENSMUST00000075853.6|Cks2|ENSMUSG00000062248.6|CDC28 protein kinase regulatory subunit 2
mm39_v1_chr6_-_142418801_142418841	0.969882	Nanog	ENSMUST00000032371.8|Gys2|ENSMUSG00000030244.8|glycogen synthase 2
mm39_v1_chr6_-_136758716_136758804	0.95786	Nanog	ENSMUST00000078095.11|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c	ENSMUST00000032338.10|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c
mm39_v1_chr14_+_4198620_4198631	0.948183	Nanog	ENSMUST00000080281.14|Rpl15|ENSMUSG00000012405.17|ribosomal protein L15
mm39_v1_chr18_+_35686424_35686475	0.946333	Nanog	ENSMUST00000235679.2|Snhg4|ENSMUSG00000117869.2|small nucleolar RNA host gene 4	ENSMUST00000235176.2|Snhg4|ENSMUSG00000117694.2|small nucleolar RNA host gene 4	ENSMUST00000235801.2|Snhg4|ENSMUSG00000117694.2|small nucleolar RNA host gene 4	ENSMUST00000237592.2|Snhg4|ENSMUSG00000117694.2|small nucleolar RNA host gene 4	ENSMUST00000237230.2|Snhg4|ENSMUSG00000117694.2|small nucleolar RNA host gene 4	ENSMUST00000237589.2|Snhg4|ENSMUSG00000117694.2|small nucleolar RNA host gene 4
mm39_v1_chr13_-_12272962_12273020	0.922889	Nanog	ENSMUST00000099856.6|Mtr|ENSMUSG00000021311.10|5-methyltetrahydrofolate-homocysteine methyltransferase
mm39_v1_chr2_+_91376650_91376678	0.922744	Nanog	ENSMUST00000099716.11|Ckap5|ENSMUSG00000040549.17|cytoskeleton associated protein 5	ENSMUST00000046769.16|Ckap5|ENSMUSG00000040549.17|cytoskeleton associated protein 5	ENSMUST00000111337.3|Ckap5|ENSMUSG00000040549.17|cytoskeleton associated protein 5
mm39_v1_chr6_-_116693849_116693885	0.894397	Nanog	ENSMUST00000056623.13|Tmem72|ENSMUSG00000048108.14|transmembrane protein 72
mm39_v1_chr12_+_3941728_3941801	0.890347	Nanog	ENSMUST00000172689.8|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A	ENSMUST00000111186.8|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A
mm39_v1_chr13_+_104365880_104365896	0.881541	Nanog	ENSMUST00000022227.8|Cenpk|ENSMUSG00000021714.16|centromere protein K
mm39_v1_chr4_-_109522502_109522569	0.881106	Nanog	ENSMUST00000063531.5|Cdkn2c|ENSMUSG00000028551.15|cyclin dependent kinase inhibitor 2C
mm39_v1_chr4_-_49597425_49597490	0.862215	Nanog	ENSMUST00000150664.2|Pgap4|ENSMUSG00000039611.3|post-GPI attachment to proteins GalNAc transferase 4
mm39_v1_chr4_+_98812047_98812079	0.851081	Nanog	ENSMUST00000030289.9|Usp1|ENSMUSG00000028560.12|ubiquitin specific peptidase 1
mm39_v1_chr3_+_146110709_146110733	0.846746	Nanog	ENSMUST00000129978.2|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein
mm39_v1_chr6_-_8259098_8259173	0.82229	Nanog	ENSMUST00000012627.5|Rpa3|ENSMUSG00000012483.5|replication protein A3
mm39_v1_chr15_+_79982033_79982074	0.818805	Nanog	ENSMUST00000143928.2|Syngr1|ENSMUSG00000022415.13|synaptogyrin 1
mm39_v1_chr11_-_70860778_70860805	0.814326	Nanog	ENSMUST00000108530.2|Nup88|ENSMUSG00000040667.12|nucleoporin 88	ENSMUST00000035283.11|Nup88|ENSMUSG00000040667.12|nucleoporin 88	ENSMUST00000108531.8|Nup88|ENSMUSG00000040667.12|nucleoporin 88
mm39_v1_chr3_+_60503051_60503132	0.810434	Nanog	ENSMUST00000192757.6|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1	ENSMUST00000193518.6|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1	ENSMUST00000195817.3|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr3_-_151899470_151899482	0.792324	Nanog	ENSMUST00000050073.13|Dnajb4|ENSMUSG00000028035.14|DnaJ heat shock protein family (Hsp40) member B4
mm39_v1_chr19_+_7534838_7534878	0.781694	Nanog	ENSMUST00000141887.8|Plaat3|ENSMUSG00000060675.14|phospholipase A and acyltransferase 3	ENSMUST00000136756.2|Plaat3|ENSMUSG00000060675.14|phospholipase A and acyltransferase 3
mm39_v1_chr3_+_103767581_103767609	0.777264	Nanog	ENSMUST00000029433.9|Ptpn22|ENSMUSG00000027843.14|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
mm39_v1_chr7_+_127845984_127846120	0.776657	Nanog	ENSMUST00000164710.8|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1	ENSMUST00000070656.12|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1
mm39_v1_chr4_+_98812082_98812130	0.747627	Nanog	ENSMUST00000091358.11|Usp1|ENSMUSG00000028560.12|ubiquitin specific peptidase 1
mm39_v1_chr17_+_7437500_7437532	0.747111	Nanog	ENSMUST00000024575.8|Rps6ka2|ENSMUSG00000023809.11|ribosomal protein S6 kinase, polypeptide 2
mm39_v1_chr17_-_50497682_50497702	0.74525	Nanog	ENSMUST00000044503.14|Rftn1|ENSMUSG00000039316.15|raftlin lipid raft linker 1
mm39_v1_chr4_-_136329953_136330071	0.739616	Nanog	ENSMUST00000105847.8|Kdm1a|ENSMUSG00000036940.16|lysine (K)-specific demethylase 1A	ENSMUST00000116273.9|Kdm1a|ENSMUSG00000036940.16|lysine (K)-specific demethylase 1A
mm39_v1_chr19_+_7534816_7534830	0.721809	Nanog	ENSMUST00000136465.8|Plaat3|ENSMUSG00000060675.14|phospholipase A and acyltransferase 3	ENSMUST00000025925.11|Plaat3|ENSMUSG00000060675.14|phospholipase A and acyltransferase 3
mm39_v1_chr3_-_54823287_54823308	0.707533	Nanog	ENSMUST00000070342.4|Sertm1|ENSMUSG00000056306.7|serine rich and transmembrane domain containing 1
mm39_v1_chr14_+_79753055_79753148	0.703049	Nanog	ENSMUST00000110835.3|Elf1|ENSMUSG00000036461.17|E74-like factor 1	ENSMUST00000227192.2|Elf1|ENSMUSG00000036461.17|E74-like factor 1
mm39_v1_chr4_-_135714465_135714580	0.701052	Nanog	ENSMUST00000105851.9|Pithd1|ENSMUSG00000028669.16|PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1
mm39_v1_chr2_+_162773440_162773581	0.694732	Nanog	ENSMUST00000130411.7|Srsf6|ENSMUSG00000016921.15|serine and arginine-rich splicing factor 6	ENSMUST00000126163.3|Srsf6|ENSMUSG00000016921.15|serine and arginine-rich splicing factor 6
mm39_v1_chr4_+_109200225_109200278	0.674309	Nanog	ENSMUST00000030281.12|Eps15|ENSMUSG00000028552.14|epidermal growth factor receptor pathway substrate 15
mm39_v1_chr6_+_71886030_71886060	0.661349	Nanog	ENSMUST00000055296.11|Polr1a|ENSMUSG00000049553.12|polymerase (RNA) I polypeptide A
mm39_v1_chr9_-_107512511_107512552	0.658414	Nanog	ENSMUST00000192615.6|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2	ENSMUST00000192837.2|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2	ENSMUST00000193876.2|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm39_v1_chr2_+_32253692_32253822	0.656782	Nanog	ENSMUST00000113331.8|Ciz1|ENSMUSG00000039205.17|CDKN1A interacting zinc finger protein 1	ENSMUST00000113338.9|Ciz1|ENSMUSG00000039205.17|CDKN1A interacting zinc finger protein 1
mm39_v1_chr7_-_13988795_13988815	0.646088	Nanog	ENSMUST00000184731.8|Sult2a6|ENSMUSG00000070810.11|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 6	ENSMUST00000076576.7|Sult2a6|ENSMUSG00000070810.11|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 6
mm39_v1_chr4_+_43506966_43507034	0.64535	Nanog	ENSMUST00000030183.10|Car9|ENSMUSG00000028463.15|carbonic anhydrase 9
mm39_v1_chr7_+_25380583_25380616	0.639719	Nanog	ENSMUST00000108403.4|B9d2|ENSMUSG00000063439.8|B9 protein domain 2
mm39_v1_chr18_+_34869412_34869412	0.629979	Nanog	ENSMUST00000105038.3|Gm3550|ENSMUSG00000078240.3|predicted gene 3550
mm39_v1_chr13_+_21365308_21365338	0.624645	Nanog	ENSMUST00000221464.2|Trim27|ENSMUSG00000021326.14|tripartite motif-containing 27
mm39_v1_chr7_-_103778992_103779033	0.620244	Nanog	ENSMUST00000053743.6|Ubqln5|ENSMUSG00000055643.5|ubiquilin 5
mm39_v1_chr9_-_107512566_107512584	0.619875	Nanog	ENSMUST00000055704.12|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm39_v1_chr9_+_92131797_92131810	0.615843	Nanog	ENSMUST00000093801.10|Plscr1|ENSMUSG00000032369.14|phospholipid scramblase 1
mm39_v1_chr7_+_24967094_24967148	0.604833	Nanog	ENSMUST00000169266.8|Cic|ENSMUSG00000005442.14|capicua transcriptional repressor
mm39_v1_chr7_+_3632982_3633036	0.592263	Nanog	ENSMUST00000179769.8|Prpf31|ENSMUSG00000008373.17|pre-mRNA processing factor 31	ENSMUST00000008517.13|Prpf31|ENSMUSG00000008373.17|pre-mRNA processing factor 31
mm39_v1_chr11_-_114825089_114825224	0.588115	Nanog	ENSMUST00000149663.4|Cd300lb|ENSMUSG00000063193.10|CD300 molecule like family member B	ENSMUST00000239005.2|Cd300lb|ENSMUSG00000063193.10|CD300 molecule like family member B	ENSMUST00000106581.5|Cd300lb|ENSMUSG00000063193.10|CD300 molecule like family member B
mm39_v1_chr7_+_25380195_25380258	0.582856	Nanog	ENSMUST00000205658.2|B9d2|ENSMUSG00000063439.8|B9 protein domain 2
mm39_v1_chr15_-_93417380_93417407	0.578737	Nanog	ENSMUST00000109255.3|Prickle1|ENSMUSG00000036158.13|prickle planar cell polarity protein 1
mm39_v1_chr16_-_38620688_38620699	0.558023	Nanog	ENSMUST00000057767.6|Upk1b|ENSMUSG00000049436.6|uroplakin 1B
mm39_v1_chr2_+_115412148_115412225	0.557148	Nanog	ENSMUST00000166472.8|Cdin1|ENSMUSG00000040282.14|CDAN1 interacting nuclease 1	ENSMUST00000110918.3|Cdin1|ENSMUSG00000040282.14|CDAN1 interacting nuclease 1
mm39_v1_chr3_-_37366567_37366615	0.55554	Nanog	ENSMUST00000075537.7|Cetn4|ENSMUSG00000045031.19|centrin 4	ENSMUST00000071400.13|Cetn4|ENSMUSG00000045031.19|centrin 4	ENSMUST00000102955.11|Cetn4|ENSMUSG00000045031.19|centrin 4	ENSMUST00000140956.8|Cetn4|ENSMUSG00000045031.19|centrin 4
mm39_v1_chr15_+_102381705_102381927	0.554799	Nanog	ENSMUST00000229958.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229184.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000230728.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000230114.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2
mm39_v1_chr8_+_111448092_111448118	0.547589	Nanog	ENSMUST00000052457.15|Mtss2|ENSMUSG00000033763.15|MTSS I-BAR domain containing 2
mm39_v1_chr5_-_65855511_65855596	0.539312	Nanog	ENSMUST00000201948.4|Pds5a|ENSMUSG00000029202.13|PDS5 cohesin associated factor A
mm39_v1_chr6_+_83162928_83163133	0.531427	Nanog	ENSMUST00000113907.2|Dctn1|ENSMUSG00000031865.17|dynactin 1
mm39_v1_chr2_+_18069375_18069516	0.528502	Nanog	ENSMUST00000114671.8|Mllt10|ENSMUSG00000026743.17|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	ENSMUST00000114680.9|Mllt10|ENSMUSG00000026743.17|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
mm39_v1_chr2_-_45002902_45003021	0.526685	Nanog	ENSMUST00000076836.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000176732.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000200844.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr4_+_94627513_94627537	0.514867	Nanog	ENSMUST00000073939.13|Tek|ENSMUSG00000006386.16|TEK receptor tyrosine kinase	ENSMUST00000102798.8|Tek|ENSMUSG00000006386.16|TEK receptor tyrosine kinase
mm39_v1_chr4_+_119052548_119052604	0.511066	Nanog	ENSMUST00000106345.3|Svbp|ENSMUSG00000028643.12|small vasohibin binding protein
mm39_v1_chr9_+_106245792_106245839	0.504528	Nanog	ENSMUST00000172306.3|Dusp7|ENSMUSG00000053716.10|dual specificity phosphatase 7
mm39_v1_chr5_-_140346132_140346183	0.502336	Nanog	ENSMUST00000196130.5|Snx8|ENSMUSG00000029560.13|sorting nexin 8
mm39_v1_chr18_-_43610829_43610868	0.500616	Nanog	ENSMUST00000057110.11|Eif3j2|ENSMUSG00000043424.11|eukaryotic translation initiation factor 3, subunit J2
mm39_v1_chr10_-_25076008_25076076	0.498174	Nanog	ENSMUST00000100012.3|Akap7|ENSMUSG00000039166.17|A kinase (PRKA) anchor protein 7
mm39_v1_chr16_-_20245071_20245136	0.496646	Nanog	ENSMUST00000115547.9|Abcc5|ENSMUSG00000022822.17|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	ENSMUST00000096199.5|Abcc5|ENSMUSG00000022822.17|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm39_v1_chr1_-_149836974_149837058	0.486792	Nanog	ENSMUST00000190507.2|Pla2g4a|ENSMUSG00000056220.15|phospholipase A2, group IVA (cytosolic, calcium-dependent)	ENSMUST00000070200.15|Pla2g4a|ENSMUSG00000056220.15|phospholipase A2, group IVA (cytosolic, calcium-dependent)
mm39_v1_chr5_+_115149170_115149269	0.478792	Nanog	ENSMUST00000031530.9|Sppl3|ENSMUSG00000029550.12|signal peptide peptidase 3
mm39_v1_chr10_+_110581293_110581433	0.477816	Nanog	ENSMUST00000174857.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000073781.12|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173471.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173634.2|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7
mm39_v1_chrX_+_158623460_158623477	0.470108	Nanog	ENSMUST00000112451.8|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1	ENSMUST00000112453.9|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chr16_+_10652910_10652948	0.466685	Nanog	ENSMUST00000037913.9|Rmi2|ENSMUSG00000037991.10|RecQ mediated genome instability 2
mm39_v1_chr14_+_19801333_19801360	0.466254	Nanog	ENSMUST00000022340.5|Nid2|ENSMUSG00000021806.5|nidogen 2
mm39_v1_chr8_+_107757847_107757862	0.464828	Nanog	ENSMUST00000034388.10|Vps4a|ENSMUSG00000031913.10|vacuolar protein sorting 4A
mm39_v1_chr7_+_25380263_25380286	0.457874	Nanog	ENSMUST00000205325.2|B9d2|ENSMUSG00000063439.8|B9 protein domain 2	ENSMUST00000206913.2|B9d2|ENSMUSG00000063439.8|B9 protein domain 2
mm39_v1_chr3_+_113824181_113824220	0.456616	Nanog	ENSMUST00000123619.8|Col11a1|ENSMUSG00000027966.21|collagen, type XI, alpha 1	ENSMUST00000092155.12|Col11a1|ENSMUSG00000027966.21|collagen, type XI, alpha 1
mm39_v1_chr7_-_132454332_132454402	0.45651	Nanog	ENSMUST00000120425.8|Eef1akmt2|ENSMUSG00000030960.17|EEF1A lysine methyltransferase 2	ENSMUST00000033257.15|Eef1akmt2|ENSMUSG00000030960.17|EEF1A lysine methyltransferase 2
mm39_v1_chr8_-_123302187_123302228	0.45641	Nanog	ENSMUST00000213062.2|Aprt|ENSMUSG00000006589.9|adenine phosphoribosyl transferase
mm39_v1_chr2_-_3513783_3513851	0.449568	Nanog	ENSMUST00000124331.8|Gm45902|ENSMUSG00000051396.16|predicted gene 45902	ENSMUST00000140494.2|Gm45902|ENSMUSG00000051396.16|predicted gene 45902	ENSMUST00000027961.12|Hspa14|ENSMUSG00000109865.2|heat shock protein 14
mm39_v1_chr2_+_29236815_29236854	0.448862	Nanog	ENSMUST00000028139.11|Med27|ENSMUSG00000026799.16|mediator complex subunit 27	ENSMUST00000113830.11|Med27|ENSMUSG00000026799.16|mediator complex subunit 27
mm39_v1_chr9_-_15268958_15269084	0.447487	Nanog	ENSMUST00000161132.9|Cep295|ENSMUSG00000046111.18|centrosomal protein 295	ENSMUST00000098979.11|Cep295|ENSMUSG00000046111.18|centrosomal protein 295
mm39_v1_chr7_+_101545547_101545638	0.445154	Nanog	ENSMUST00000035395.14|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000106973.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000144207.9|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr16_-_20245138_20245149	0.442499	Nanog	ENSMUST00000079158.13|Abcc5|ENSMUSG00000022822.17|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm39_v1_chr10_+_26648473_26648512	0.441751	Nanog	ENSMUST00000039557.9|Arhgap18|ENSMUSG00000039031.17|Rho GTPase activating protein 18
mm39_v1_chr12_-_83534482_83534504	0.428416	Nanog	ENSMUST00000177959.8|Dpf3|ENSMUSG00000021221.16|D4, zinc and double PHD fingers, family 3	ENSMUST00000178756.8|Dpf3|ENSMUSG00000021221.16|D4, zinc and double PHD fingers, family 3
mm39_v1_chr17_+_24633614_24633671	0.427663	Nanog	ENSMUST00000115371.9|Rnps1|ENSMUSG00000034681.18|RNA binding protein with serine rich domain 1	ENSMUST00000088512.13|Rnps1|ENSMUSG00000034681.18|RNA binding protein with serine rich domain 1	ENSMUST00000163717.2|Rnps1|ENSMUSG00000034681.18|RNA binding protein with serine rich domain 1
mm39_v1_chr5_-_139761387_139761436	0.425055	Nanog	ENSMUST00000200393.5|Ints1|ENSMUSG00000029547.11|integrator complex subunit 1	ENSMUST00000072607.9|Ints1|ENSMUSG00000029547.11|integrator complex subunit 1	ENSMUST00000196864.2|Ints1|ENSMUSG00000029547.11|integrator complex subunit 1
mm39_v1_chr4_-_43710231_43710255	0.4237	Nanog	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chr7_+_101546059_101546168	0.418709	Nanog	ENSMUST00000143835.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr12_-_40087393_40087428	0.417734	Nanog	ENSMUST00000146905.2|Arl4a|ENSMUSG00000047446.19|ADP-ribosylation factor-like 4A
mm39_v1_chr3_+_105778174_105778229	0.415216	Nanog	ENSMUST00000164730.2|Adora3|ENSMUSG00000000562.6|adenosine A3 receptor	ENSMUST00000010279.10|Tmigd3|ENSMUSG00000074344.8|transmembrane and immunoglobulin domain containing 3
mm39_v1_chr12_-_56392646_56392679	0.401244	Nanog	ENSMUST00000021416.9|Mbip|ENSMUSG00000021028.9|MAP3K12 binding inhibitory protein 1
mm39_v1_chr16_+_78727829_78727847	0.400186	Nanog	ENSMUST00000114216.2|Chodl|ENSMUSG00000022860.16|chondrolectin	ENSMUST00000069148.13|Chodl|ENSMUSG00000022860.16|chondrolectin	ENSMUST00000023568.14|Chodl|ENSMUSG00000022860.16|chondrolectin
mm39_v1_chr19_-_32173824_32173842	0.399653	Nanog	ENSMUST00000151822.2|Sgms1|ENSMUSG00000040451.19|sphingomyelin synthase 1
mm39_v1_chr4_+_128582519_128582588	0.39756	Nanog	ENSMUST00000106080.8|Phc2|ENSMUSG00000028796.18|polyhomeotic 2
mm39_v1_chr14_+_73475335_73475447	0.396765	Nanog	ENSMUST00000044405.8|Lpar6|ENSMUSG00000033446.8|lysophosphatidic acid receptor 6
mm39_v1_chr5_-_123663440_123663492	0.394642	Nanog	ENSMUST00000197682.6|Gm49027|ENSMUSG00000114278.3|predicted gene, 49027
mm39_v1_chr14_-_49482846_49482931	0.393243	Nanog	ENSMUST00000227113.2|ccdc198|ENSMUSG00000021850.15|coiled-coil domain containing 198	ENSMUST00000130853.2|ccdc198|ENSMUSG00000021850.15|coiled-coil domain containing 198	ENSMUST00000228936.2|ccdc198|ENSMUSG00000021850.15|coiled-coil domain containing 198	ENSMUST00000022398.15|ccdc198|ENSMUSG00000021850.15|coiled-coil domain containing 198
mm39_v1_chr19_+_34078333_34078399	0.384372	Nanog	ENSMUST00000025685.8|Lipm|ENSMUSG00000056078.7|lipase, family member M
mm39_v1_chr9_-_70564403_70564470	0.384261	Nanog	ENSMUST00000213380.2|Mindy2|ENSMUSG00000042444.11|MINDY lysine 48 deubiquitinase 2	ENSMUST00000049031.6|Mindy2|ENSMUSG00000042444.11|MINDY lysine 48 deubiquitinase 2
mm39_v1_chr17_+_36152383_36152407	0.38415	Nanog	ENSMUST00000082337.13|Mdc1|ENSMUSG00000061607.16|mediator of DNA damage checkpoint 1
mm39_v1_chr13_-_3943556_3943589	0.377676	Nanog	ENSMUST00000099946.6|Net1|ENSMUSG00000021215.16|neuroepithelial cell transforming gene 1
mm39_v1_chr7_+_126184108_126184127	0.37625	Nanog	ENSMUST00000039522.8|Apobr|ENSMUSG00000042759.13|apolipoprotein B receptor
mm39_v1_chr4_+_101365144_101365229	0.370372	Nanog	ENSMUST00000149047.8|Dnajc6|ENSMUSG00000028528.18|DnaJ heat shock protein family (Hsp40) member C6	ENSMUST00000106929.10|Dnajc6|ENSMUSG00000028528.18|DnaJ heat shock protein family (Hsp40) member C6
mm39_v1_chr7_+_19144950_19145026	0.369425	Nanog	ENSMUST00000208710.2|Ckm|ENSMUSG00000030399.3|creatine kinase, muscle	ENSMUST00000003643.3|Ckm|ENSMUSG00000030399.3|creatine kinase, muscle
mm39_v1_chr9_-_44216892_44216986	0.367974	Nanog	ENSMUST00000034629.6|Hinfp|ENSMUSG00000032119.6|histone H4 transcription factor	ENSMUST00000214660.2|Hinfp|ENSMUSG00000032119.6|histone H4 transcription factor	ENSMUST00000216508.2|Hinfp|ENSMUSG00000032119.6|histone H4 transcription factor
mm39_v1_chr3_+_121838076_121838118	0.367874	Nanog	ENSMUST00000013995.13|Abca4|ENSMUSG00000028125.15|ATP-binding cassette, sub-family A (ABC1), member 4
mm39_v1_chr11_-_107228382_107228463	0.363833	Nanog	ENSMUST00000040380.13|Pitpnc1|ENSMUSG00000040430.19|phosphatidylinositol transfer protein, cytoplasmic 1
mm39_v1_chr15_+_78312764_78312836	0.361186	Nanog	ENSMUST00000162517.8|Kctd17|ENSMUSG00000033287.17|potassium channel tetramerisation domain containing 17	ENSMUST00000166142.10|Kctd17|ENSMUSG00000033287.17|potassium channel tetramerisation domain containing 17	ENSMUST00000089414.11|Kctd17|ENSMUSG00000033287.17|potassium channel tetramerisation domain containing 17
mm39_v1_chr8_+_96551974_96551982	0.35268	Nanog	ENSMUST00000074053.6|Sap18b|ENSMUSG00000061104.6|Sin3-associated polypeptide 18B
mm39_v1_chr19_+_46345319_46345381	0.351561	Nanog	ENSMUST00000086969.13|Mfsd13a|ENSMUSG00000025227.15|major facilitator superfamily domain containing 13a
mm39_v1_chr10_+_129153986_129153986	0.335731	Nanog	ENSMUST00000215503.2|Olfr780|ENSMUSG00000049573.4|olfactory receptor 780
mm39_v1_chr13_-_3943433_3943553	0.330685	Nanog	ENSMUST00000222504.2|Net1|ENSMUSG00000021215.16|neuroepithelial cell transforming gene 1
mm39_v1_chr14_-_40726472_40726490	0.326223	Nanog	ENSMUST00000153830.8|Prxl2a|ENSMUSG00000021792.16|peroxiredoxin like 2A
mm39_v1_chr9_-_123778334_123778445	0.324012	Nanog	ENSMUST00000071404.5|Ccr1l1|ENSMUSG00000064039.5|chemokine (C-C motif) receptor 1-like 1
mm39_v1_chr19_-_45771939_45772000	0.32383	Nanog	ENSMUST00000026243.5|Oga|ENSMUSG00000025220.9|O-GlcNAcase
mm39_v1_chr15_+_78312851_78312871	0.320858	Nanog	ENSMUST00000159771.8|Kctd17|ENSMUSG00000033287.17|potassium channel tetramerisation domain containing 17
mm39_v1_chr2_+_26471062_26471074	0.318864	Nanog	ENSMUST00000238951.2|Egfl7|ENSMUSG00000026921.21|EGF-like domain 7	ENSMUST00000166920.10|Egfl7|ENSMUSG00000026921.21|EGF-like domain 7
mm39_v1_chr12_-_113733922_113733922	0.316829	Nanog	ENSMUST00000180013.3|Ighv2-9-1|ENSMUSG00000095565.3|immunoglobulin heavy variable 2-9-1
mm39_v1_chr12_+_38833454_38833482	0.313371	Nanog	ENSMUST00000161980.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000160701.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr4_+_101365052_101365068	0.308189	Nanog	ENSMUST00000038207.12|Dnajc6|ENSMUSG00000028528.18|DnaJ heat shock protein family (Hsp40) member C6
mm39_v1_chr12_+_38833501_38833526	0.307973	Nanog	ENSMUST00000159334.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chrX_+_41241049_41241072	0.302	Nanog	ENSMUST00000128799.3|Stag2|ENSMUSG00000025862.15|stromal antigen 2
mm39_v1_chr19_-_40371016_40371077	0.301907	Nanog	ENSMUST00000225766.3|Sorbs1|ENSMUSG00000025006.19|sorbin and SH3 domain containing 1
mm39_v1_chr4_+_19818718_19818733	0.301145	Nanog	ENSMUST00000035890.8|Slc7a13|ENSMUSG00000041052.9|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
mm39_v1_chr8_-_89770790_89770823	0.301007	Nanog	ENSMUST00000034090.8|Sall1|ENSMUSG00000031665.8|spalt like transcription factor 1
mm39_v1_chr7_-_30259253_30259267	0.300785	Nanog	ENSMUST00000108164.8|Lin37|ENSMUSG00000036845.13|lin-37 homolog (C. elegans)
mm39_v1_chr7_-_26895141_26895192	0.291103	Nanog	ENSMUST00000163311.9|Snrpa|ENSMUSG00000061479.16|small nuclear ribonucleoprotein polypeptide A	ENSMUST00000126211.2|Snrpa|ENSMUSG00000061479.16|small nuclear ribonucleoprotein polypeptide A
mm39_v1_chr18_-_67378886_67378915	0.290891	Nanog	ENSMUST00000073054.5|Mppe1|ENSMUSG00000062526.5|metallophosphoesterase 1
mm39_v1_chr2_+_127750978_127750978	0.288508	Nanog	ENSMUST00000110344.2|Acoxl|ENSMUSG00000027380.11|acyl-Coenzyme A oxidase-like
mm39_v1_chr8_+_85412928_85412977	0.287016	Nanog	ENSMUST00000177531.8|Trmt1|ENSMUSG00000001909.17|tRNA methyltransferase 1
mm39_v1_chr2_-_181223787_181223801	0.28596	Nanog	ENSMUST00000057816.15|Uckl1|ENSMUSG00000089917.8|uridine-cytidine kinase 1-like 1
mm39_v1_chr11_-_99134885_99134964	0.278692	Nanog	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr3_+_103739877_103739917	0.278581	Nanog	ENSMUST00000062945.12|Bcl2l15|ENSMUSG00000044165.13|BCLl2-like 15
mm39_v1_chr7_-_30259025_30259084	0.267662	Nanog	ENSMUST00000043975.11|Lin37|ENSMUSG00000036845.13|lin-37 homolog (C. elegans)	ENSMUST00000156241.2|Lin37|ENSMUSG00000036845.13|lin-37 homolog (C. elegans)
mm39_v1_chr16_+_87251852_87251875	0.261577	Nanog	ENSMUST00000119504.8|Usp16|ENSMUSG00000025616.15|ubiquitin specific peptidase 16	ENSMUST00000131356.8|Usp16|ENSMUSG00000025616.15|ubiquitin specific peptidase 16
mm39_v1_chr9_+_98873831_98873884	0.252811	Nanog	ENSMUST00000185472.2|Faim|ENSMUSG00000032463.11|Fas apoptotic inhibitory molecule
mm39_v1_chr19_+_8779903_8779922	0.251226	Nanog	ENSMUST00000172175.3|Zbtb3|ENSMUSG00000071661.8|zinc finger and BTB domain containing 3
mm39_v1_chr11_-_99265721_99265735	0.246131	Nanog	ENSMUST00000006963.3|Krt28|ENSMUSG00000055937.2|keratin 28
mm39_v1_chr2_+_62494622_62494644	0.245142	Nanog	ENSMUST00000028257.3|Gca|ENSMUSG00000026893.5|grancalcin
mm39_v1_chr7_-_141241632_141241647	0.242324	Nanog	ENSMUST00000239500.1|ENSMUSG00000118661.1|ENSMUSG00000118661.1|mucin 6, gastric
mm39_v1_chr11_+_62711057_62711281	0.239994	Nanog	ENSMUST00000055006.12|Trim16|ENSMUSG00000047821.17|tripartite motif-containing 16	ENSMUST00000072639.10|Trim16|ENSMUSG00000047821.17|tripartite motif-containing 16
mm39_v1_chr6_-_102441628_102441628	0.237376	Nanog	ENSMUST00000032159.7|Cntn3|ENSMUSG00000030075.11|contactin 3
mm39_v1_chr19_+_13208692_13208692	0.236111	Nanog	ENSMUST00000207246.4|Olfr1463|ENSMUSG00000096365.5|olfactory receptor 1463
mm39_v1_chr15_+_9436114_9436190	0.229164	Nanog	ENSMUST00000042360.5|Capsl|ENSMUSG00000039676.5|calcyphosine-like	ENSMUST00000226688.2|Capsl|ENSMUSG00000039676.5|calcyphosine-like
mm39_v1_chr4_+_80752360_80752467	0.225766	Nanog	ENSMUST00000133655.8|Tyrp1|ENSMUSG00000005994.15|tyrosinase-related protein 1	ENSMUST00000006151.13|Tyrp1|ENSMUSG00000005994.15|tyrosinase-related protein 1
mm39_v1_chr17_-_48145466_48145616	0.218894	Nanog	ENSMUST00000066368.13|Mdfi|ENSMUSG00000032717.15|MyoD family inhibitor
mm39_v1_chr11_+_68979332_68979380	0.2088	Nanog	ENSMUST00000117780.2|Vamp2|ENSMUSG00000020894.17|vesicle-associated membrane protein 2
mm39_v1_chr5_-_124325213_124325266	0.208519	Nanog	ENSMUST00000161938.8|Pitpnm2|ENSMUSG00000029406.16|phosphatidylinositol transfer protein, membrane-associated 2
mm39_v1_chr3_+_37366662_37366726	0.207153	Nanog	ENSMUST00000138710.3|Gm43439|ENSMUSG00000106407.2|predicted gene 43439	ENSMUST00000057975.8|Bbs12|ENSMUSG00000051444.10|Bardet-Biedl syndrome 12 (human)	ENSMUST00000108121.4|Bbs12|ENSMUSG00000051444.10|Bardet-Biedl syndrome 12 (human)
mm39_v1_chr18_-_21785419_21785430	0.205627	Nanog	ENSMUST00000049105.11|Klhl14|ENSMUSG00000042514.12|kelch-like 14
mm39_v1_chr7_-_3632826_3632928	0.204862	Nanog	ENSMUST00000205596.2|Tfpt|ENSMUSG00000006335.17|TCF3 (E2A) fusion partner	ENSMUST00000155592.8|Tfpt|ENSMUSG00000006335.17|TCF3 (E2A) fusion partner	ENSMUST00000108641.10|Tfpt|ENSMUSG00000006335.17|TCF3 (E2A) fusion partner
mm39_v1_chr6_-_50433064_50433155	0.204656	Nanog	ENSMUST00000146341.4|Osbpl3|ENSMUSG00000029822.16|oxysterol binding protein-like 3	ENSMUST00000071728.11|Osbpl3|ENSMUSG00000029822.16|oxysterol binding protein-like 3
mm39_v1_chr19_+_4242064_4242120	0.202034	Nanog	ENSMUST00000046094.6|Ppp1ca|ENSMUSG00000040385.8|protein phosphatase 1 catalytic subunit alpha
mm39_v1_chr18_+_82572595_82572705	0.200935	Nanog	ENSMUST00000152071.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000142850.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000080658.12|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000133193.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000123251.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000153478.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000075372.13|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000102812.12|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000062446.15|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000114674.11|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000132369.3|Mbp|ENSMUSG00000041607.18|myelin basic protein
mm39_v1_chr17_-_37523969_37524009	0.200299	Nanog	ENSMUST00000060728.7|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95	ENSMUST00000216318.2|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95
mm39_v1_chr4_+_80752535_80752550	0.197466	Nanog	ENSMUST00000102831.8|Tyrp1|ENSMUSG00000005994.15|tyrosinase-related protein 1
mm39_v1_chr2_-_45000389_45000766	0.195079	Nanog	ENSMUST00000201804.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000028229.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000202187.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000153561.6|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201490.2|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr2_+_26473870_26473892	0.194476	Nanog	ENSMUST00000100290.13|Egfl7|ENSMUSG00000026921.21|EGF-like domain 7	ENSMUST00000238983.2|Egfl7|ENSMUSG00000026921.21|EGF-like domain 7	ENSMUST00000102907.13|Egfl7|ENSMUSG00000026921.21|EGF-like domain 7
mm39_v1_chr1_-_181985663_181985663	0.194413	Nanog	ENSMUST00000169123.4|Vmn1r1|ENSMUSG00000091013.4|vomeronasal 1 receptor 1
mm39_v1_chr11_+_68979308_68979319	0.192278	Nanog	ENSMUST00000021273.13|Vamp2|ENSMUSG00000020894.17|vesicle-associated membrane protein 2
mm39_v1_chr5_-_115791032_115791051	0.19113	Nanog	ENSMUST00000121746.8|Bicdl1|ENSMUSG00000041609.17|BICD family like cargo adaptor 1	ENSMUST00000118576.8|Bicdl1|ENSMUSG00000041609.17|BICD family like cargo adaptor 1
mm39_v1_chr19_-_13126896_13126896	0.175166	Nanog	ENSMUST00000213493.2|Olfr1459|ENSMUSG00000057503.7|olfactory receptor 1459
mm39_v1_chr11_+_69886603_69886642	0.169967	Nanog	ENSMUST00000018716.10|Phf23|ENSMUSG00000018572.11|PHD finger protein 23
mm39_v1_chr6_+_70495224_70495236	0.165817	Nanog	ENSMUST00000103396.2|Igkv3-12|ENSMUSG00000094117.2|immunoglobulin kappa variable 3-12
mm39_v1_chr16_+_16801246_16801278	0.165753	Nanog	ENSMUST00000232611.2|Mapk1|ENSMUSG00000063358.18|mitogen-activated protein kinase 1	ENSMUST00000069107.14|Mapk1|ENSMUSG00000063358.18|mitogen-activated protein kinase 1
mm39_v1_chr17_-_26052335_26052378	0.16505	Nanog	ENSMUST00000044911.10|Stub1|ENSMUSG00000039615.10|STIP1 homology and U-Box containing protein 1	ENSMUST00000237186.2|Stub1|ENSMUSG00000039615.10|STIP1 homology and U-Box containing protein 1
mm39_v1_chr11_+_69886652_69886723	0.164003	Nanog	ENSMUST00000101526.9|Phf23|ENSMUSG00000018572.11|PHD finger protein 23
mm39_v1_chr2_-_152857239_152857347	0.161396	Nanog	ENSMUST00000028972.9|Pdrg1|ENSMUSG00000027472.15|p53 and DNA damage regulated 1
mm39_v1_chr13_+_23966524_23966524	0.156235	Nanog	ENSMUST00000074067.4|Trim38|ENSMUSG00000064140.4|tripartite motif-containing 38
mm39_v1_chr10_-_9776823_9776995	0.152805	Nanog	ENSMUST00000141722.8|Stxbp5|ENSMUSG00000019790.18|syntaxin binding protein 5 (tomosyn)
mm39_v1_chr15_-_79658608_79658673	0.150304	Nanog	ENSMUST00000229644.2|Dnal4|ENSMUSG00000022420.17|dynein, axonemal, light chain 4	ENSMUST00000023055.8|Dnal4|ENSMUSG00000022420.17|dynein, axonemal, light chain 4
mm39_v1_chr16_+_35861554_35861605	0.150139	Nanog	ENSMUST00000042203.10|Wdr5b|ENSMUSG00000034379.10|WD repeat domain 5B
mm39_v1_chr13_-_9815350_9815405	0.149323	Nanog	ENSMUST00000110636.9|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11	ENSMUST00000152725.8|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11
mm39_v1_chr1_-_171854818_171854880	0.147299	Nanog	ENSMUST00000138714.2|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000027837.13|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000111264.8|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2
mm39_v1_chr13_+_23936250_23936338	0.144111	Nanog	ENSMUST00000091703.3|H3c2|ENSMUSG00000069267.3|H3 clustered histone 2
mm39_v1_chr5_+_25451771_25451800	0.143737	Nanog	ENSMUST00000144971.2|Galnt11|ENSMUSG00000038072.15|polypeptide N-acetylgalactosaminyltransferase 11
mm39_v1_chr7_+_30021165_30021199	0.142644	Nanog	ENSMUST00000098585.4|E130208F15Rik|ENSMUSG00000074210.4|RIKEN cDNA E130208F15 gene
mm39_v1_chr10_-_7162196_7162248	0.142351	Nanog	ENSMUST00000015346.12|Cnksr3|ENSMUSG00000015202.14|Cnksr family member 3
mm39_v1_chr10_+_129072073_129072073	0.142128	Nanog	ENSMUST00000203248.3|Olfr774|ENSMUSG00000096229.4|olfactory receptor 774
mm39_v1_chr12_-_72455708_72455828	0.13691	Nanog	ENSMUST00000078505.14|Rtn1|ENSMUSG00000021087.19|reticulon 1
mm39_v1_chr16_-_64299511_64299603	0.134598	Nanog	ENSMUST00000089279.5|Csnka2ip|ENSMUSG00000068167.7|casein kinase 2, alpha prime interacting protein
mm39_v1_chr7_+_23330147_23330147	0.130396	Nanog	ENSMUST00000227774.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000226771.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000228681.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000228559.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000228674.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000227866.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000227386.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000228484.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000226321.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000226128.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000226733.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000228228.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171
mm39_v1_chr19_+_29499671_29499682	0.126886	Nanog	ENSMUST00000043610.13|Ric1|ENSMUSG00000038658.16|RAB6A GEF complex partner 1
mm39_v1_chr18_+_35347983_35348189	0.123971	Nanog	ENSMUST00000235449.2|Ctnna1|ENSMUSG00000037815.8|catenin (cadherin associated protein), alpha 1	ENSMUST00000235269.2|Ctnna1|ENSMUSG00000037815.8|catenin (cadherin associated protein), alpha 1
mm39_v1_chr3_-_102690026_102690034	0.123046	Nanog	ENSMUST00000172026.8|Tshb|ENSMUSG00000027857.11|thyroid stimulating hormone, beta subunit	ENSMUST00000170856.6|Tshb|ENSMUSG00000027857.11|thyroid stimulating hormone, beta subunit
mm39_v1_chr10_+_73782857_73782903	0.121026	Nanog	ENSMUST00000191709.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000193739.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000195531.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chr15_-_79658584_79658603	0.117012	Nanog	ENSMUST00000069877.12|Dnal4|ENSMUSG00000022420.17|dynein, axonemal, light chain 4
mm39_v1_chr11_+_95603494_95603529	0.114195	Nanog	ENSMUST00000107717.8|Zfp652|ENSMUSG00000075595.10|zinc finger protein 652
mm39_v1_chr19_-_46384158_46384199	0.110379	Nanog	ENSMUST00000237742.2|Actr1a|ENSMUSG00000025228.6|ARP1 actin-related protein 1A, centractin alpha	ENSMUST00000040270.6|Actr1a|ENSMUSG00000025228.6|ARP1 actin-related protein 1A, centractin alpha
mm39_v1_chr10_+_130158737_130158774	0.107257	Nanog	ENSMUST00000217702.2|Tespa1|ENSMUSG00000034833.11|thymocyte expressed, positive selection associated 1	ENSMUST00000042586.10|Tespa1|ENSMUSG00000034833.11|thymocyte expressed, positive selection associated 1	ENSMUST00000218605.2|Tespa1|ENSMUSG00000034833.11|thymocyte expressed, positive selection associated 1
mm39_v1_chr11_-_48836975_48837017	0.105453	Nanog	ENSMUST00000104958.2|Psme2b|ENSMUSG00000078153.4|protease (prosome, macropain) activator subunit 2B
mm39_v1_chr17_+_25946644_25946772	0.103808	Nanog	ENSMUST00000237183.2|Rpusd1|ENSMUSG00000041199.4|RNA pseudouridylate synthase domain containing 1	ENSMUST00000237785.2|Rpusd1|ENSMUSG00000041199.4|RNA pseudouridylate synthase domain containing 1	ENSMUST00000047273.3|Rpusd1|ENSMUSG00000041199.4|RNA pseudouridylate synthase domain containing 1
mm39_v1_chr5_-_124490296_124490364	0.103381	Nanog	ENSMUST00000111472.6|Cdk2ap1|ENSMUSG00000029394.12|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm39_v1_chr1_-_162913210_162913242	0.102592	Nanog	ENSMUST00000096608.5|Mroh9|ENSMUSG00000071890.5|maestro heat-like repeat family member 9
mm39_v1_chr8_-_62576140_62576157	0.102075	Nanog	ENSMUST00000034052.14|Anxa10|ENSMUSG00000031635.15|annexin A10	ENSMUST00000034054.9|Anxa10|ENSMUSG00000031635.15|annexin A10
mm39_v1_chr7_+_103578032_103578032	0.0994047	Nanog	ENSMUST00000106863.2|Olfr631|ENSMUSG00000042219.7|olfactory receptor 631
mm39_v1_chr4_-_52919172_52919178	0.0993107	Nanog	ENSMUST00000107667.3|Olfr272|ENSMUSG00000051593.5|olfactory receptor 272	ENSMUST00000213989.2|Olfr272|ENSMUSG00000051593.5|olfactory receptor 272
mm39_v1_chr2_-_87466089_87466089	0.0991585	Nanog	ENSMUST00000090711.3|Olfr1132|ENSMUSG00000068818.6|olfactory receptor 1132
mm39_v1_chr5_-_100521343_100521393	0.0989153	Nanog	ENSMUST00000182433.8|Sec31a|ENSMUSG00000035325.17|Sec31 homolog A (S. cerevisiae)
mm39_v1_chr6_-_71376277_71376332	0.097995	Nanog	ENSMUST00000149415.2|Rmnd5a|ENSMUSG00000002222.15|required for meiotic nuclear division 5 homolog A
mm39_v1_chr4_-_82970467_82970576	0.0923175	Nanog	ENSMUST00000107230.8|Frem1|ENSMUSG00000059049.15|Fras1 related extracellular matrix protein 1
mm39_v1_chr19_-_41921676_41921862	0.0917767	Nanog	ENSMUST00000075280.12|Exosc1|ENSMUSG00000034321.15|exosome component 1	ENSMUST00000112123.4|Exosc1|ENSMUSG00000034321.15|exosome component 1
mm39_v1_chr14_-_31503869_31503892	0.0902985	Nanog	ENSMUST00000227089.2|Ankrd28|ENSMUSG00000014496.9|ankyrin repeat domain 28
mm39_v1_chr4_+_86493905_86493927	0.0901298	Nanog	ENSMUST00000091064.8|Rraga|ENSMUSG00000070934.7|Ras-related GTP binding A
mm39_v1_chrX_+_56008685_56008685	0.0864042	Nanog	ENSMUST00000096431.10|Adgrg4|ENSMUSG00000053852.12|adhesion G protein-coupled receptor G4
mm39_v1_chr7_+_100435548_100435582	0.0837669	Nanog	ENSMUST00000216021.2|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A
mm39_v1_chr17_-_43854530_43854530	0.0820897	Nanog	ENSMUST00000178772.3|Ankrd66|ENSMUSG00000096140.3|ankyrin repeat domain 66
mm39_v1_chrX_+_101163053_101163096	0.0806627	Nanog	ENSMUST00000113627.4|Pin4|ENSMUSG00000079480.4|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
mm39_v1_chrX_-_151820545_151820578	0.0783666	Nanog	ENSMUST00000051484.5|Mageh1|ENSMUSG00000047238.5|MAGE family member H1
mm39_v1_chr2_-_139908615_139908725	0.076929	Nanog	ENSMUST00000046656.9|Tasp1|ENSMUSG00000039033.12|taspase, threonine aspartase 1	ENSMUST00000099304.4|Tasp1|ENSMUSG00000039033.12|taspase, threonine aspartase 1	ENSMUST00000110079.9|Tasp1|ENSMUSG00000039033.12|taspase, threonine aspartase 1
mm39_v1_chr2_+_131751848_131751899	0.0677146	Nanog	ENSMUST00000091288.13|Prnp|ENSMUSG00000079037.10|prion protein	ENSMUST00000124100.8|Prn|ENSMUSG00000098754.8|prion protein readthrough transcript	ENSMUST00000136783.2|Prn|ENSMUSG00000098754.8|prion protein readthrough transcript
mm39_v1_chrX_-_100463810_100463970	0.0674874	Nanog	ENSMUST00000118092.8|Zmym3|ENSMUSG00000031310.17|zinc finger, MYM-type 3	ENSMUST00000119699.8|Zmym3|ENSMUSG00000031310.17|zinc finger, MYM-type 3
mm39_v1_chr19_-_12870888_12870888	0.0652117	Nanog	ENSMUST00000216805.3|Olfr1446|ENSMUSG00000057817.7|olfactory receptor 1446	ENSMUST00000207741.2|Olfr1446|ENSMUSG00000057817.7|olfactory receptor 1446
mm39_v1_chr3_+_64884839_64884917	0.0646798	Nanog	ENSMUST00000239069.2|Kcnab1|ENSMUSG00000027827.18|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm39_v1_chr6_+_42716305_42716305	0.0645378	Nanog	ENSMUST00000213997.2|Olfr453|ENSMUSG00000095831.3|olfactory receptor 453
mm39_v1_chr4_+_124830822_124830867	0.062094	Nanog	ENSMUST00000094769.13|9930104L06Rik|ENSMUSG00000044730.18|RIKEN cDNA 9930104L06 gene
mm39_v1_chr11_+_46295547_46295562	0.0611729	Nanog	ENSMUST00000063166.6|Fam71b|ENSMUSG00000020401.7|family with sequence similarity 71, member B
mm39_v1_chr7_-_133943703_133943726	0.0602936	Nanog	ENSMUST00000106129.9|D7Ertd443e|ENSMUSG00000030994.17|DNA segment, Chr 7, ERATO Doi 443, expressed
mm39_v1_chr3_+_105811712_105811743	0.0541695	Nanog	ENSMUST00000000574.3|Adora3|ENSMUSG00000000562.6|adenosine A3 receptor
mm39_v1_chr5_-_124387812_124387845	0.0537655	Nanog	ENSMUST00000162812.8|Pitpnm2|ENSMUSG00000029406.16|phosphatidylinositol transfer protein, membrane-associated 2
mm39_v1_chr9_+_108368032_108368072	0.0441322	Nanog	ENSMUST00000166103.9|Usp19|ENSMUSG00000006676.17|ubiquitin specific peptidase 19	ENSMUST00000085044.14|Usp19|ENSMUSG00000006676.17|ubiquitin specific peptidase 19	ENSMUST00000193678.6|Usp19|ENSMUSG00000006676.17|ubiquitin specific peptidase 19	ENSMUST00000178075.8|Usp19|ENSMUSG00000006676.17|ubiquitin specific peptidase 19
mm39_v1_chr8_-_35432783_35432869	0.0439703	Nanog	ENSMUST00000033929.6|Tnks|ENSMUSG00000031529.6|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm39_v1_chr5_-_103777145_103777269	0.0408926	Nanog	ENSMUST00000031263.2|Slc10a6|ENSMUSG00000029321.2|solute carrier family 10 (sodium/bile acid cotransporter family), member 6
mm39_v1_chr6_+_90246088_90246088	0.0396424	Nanog	ENSMUST00000058039.3|Vmn1r54|ENSMUSG00000047203.4|vomeronasal 1 receptor 54
mm39_v1_chr10_+_85222677_85222704	0.0389796	Nanog	ENSMUST00000105307.8|Btbd11|ENSMUSG00000020042.16|BTB (POZ) domain containing 11	ENSMUST00000020231.10|Btbd11|ENSMUSG00000020042.16|BTB (POZ) domain containing 11
mm39_v1_chr7_-_42962487_42962540	0.036339	Nanog	ENSMUST00000135130.2|Zfp715|ENSMUSG00000012640.17|zinc finger protein 715	ENSMUST00000139061.2|Zfp715|ENSMUSG00000012640.17|zinc finger protein 715
mm39_v1_chr13_+_21295653_21295723	0.0349633	Nanog	ENSMUST00000213326.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1	ENSMUST00000215941.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1	ENSMUST00000215207.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1	ENSMUST00000213922.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1
mm39_v1_chr1_-_182109773_182109810	0.0338726	Nanog	ENSMUST00000133052.2|Degs1|ENSMUSG00000038633.6|delta(4)-desaturase, sphingolipid 1
mm39_v1_chr2_+_28950250_28950311	0.033376	Nanog	ENSMUST00000100237.4|Ttf1|ENSMUSG00000026803.18|transcription termination factor, RNA polymerase I
mm39_v1_chr12_+_102094977_102094997	0.0314272	Nanog	ENSMUST00000159329.8|Slc24a4|ENSMUSG00000041771.15|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm39_v1_chr14_+_52892115_52892274	0.0308486	Nanog	ENSMUST00000198019.2|Trav7-1|ENSMUSG00000104620.2|T cell receptor alpha variable 7-1
mm39_v1_chr11_+_62711295_62711315	0.028908	Nanog	ENSMUST00000108703.2|Trim16|ENSMUSG00000047821.17|tripartite motif-containing 16
mm39_v1_chr8_+_79235946_79236030	0.0284118	Nanog	ENSMUST00000209490.2|Slc10a7|ENSMUSG00000031684.12|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	ENSMUST00000034111.10|Slc10a7|ENSMUSG00000031684.12|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm39_v1_chr19_+_41921903_41921979	0.0246294	Nanog	ENSMUST00000224258.2|Zdhhc16|ENSMUSG00000025157.9|zinc finger, DHHC domain containing 16	ENSMUST00000026154.9|Zdhhc16|ENSMUSG00000025157.9|zinc finger, DHHC domain containing 16	ENSMUST00000224896.2|Zdhhc16|ENSMUSG00000025157.9|zinc finger, DHHC domain containing 16
mm39_v1_chr18_+_69633741_69634029	0.0236649	Nanog	ENSMUST00000207214.2|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201094.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000200703.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202765.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr18_+_57275854_57275868	0.0233474	Nanog	ENSMUST00000139892.2|Megf10|ENSMUSG00000024593.16|multiple EGF-like-domains 10
mm39_v1_chr17_+_23879448_23879503	0.0207275	Nanog	ENSMUST00000062967.10|Bicdl2|ENSMUSG00000043782.10|BICD family like cargo adaptor 2
mm39_v1_chr7_-_102566717_102566743	0.0201399	Nanog	ENSMUST00000214160.2|Olfr571|ENSMUSG00000043310.5|olfactory receptor 571	ENSMUST00000215773.2|Olfr571|ENSMUSG00000043310.5|olfactory receptor 571
mm39_v1_chr11_-_97944239_97944293	0.0188886	Nanog	ENSMUST00000017544.9|Stac2|ENSMUSG00000017400.11|SH3 and cysteine rich domain 2
mm39_v1_chr13_-_9815173_9815243	0.0182625	Nanog	ENSMUST00000062658.15|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11	ENSMUST00000222358.2|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11
mm39_v1_chr7_+_140796096_140796116	0.0165022	Nanog	ENSMUST00000153081.2|Rassf7|ENSMUSG00000038618.13|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm39_v1_chr17_+_35150229_35150360	0.0142323	Nanog	ENSMUST00000007253.6|Neu1|ENSMUSG00000007038.6|neuraminidase 1
mm39_v1_chr11_-_45943138_45943138	0.0122084	Nanog	ENSMUST00000093169.3|Gm12166|ENSMUSG00000069899.4|predicted gene 12166
mm39_v1_chr16_+_13176238_13176334	0.0118489	Nanog	ENSMUST00000149359.2|Mrtfb|ENSMUSG00000009569.15|myocardin related transcription factor B
mm39_v1_chr3_+_106020545_106020706	0.011293	Nanog	ENSMUST00000079132.12|Chia1|ENSMUSG00000062778.13|chitinase, acidic 1	ENSMUST00000139086.2|Chia1|ENSMUSG00000062778.13|chitinase, acidic 1
mm39_v1_chr5_-_108017019_108017041	0.0111746	Nanog	ENSMUST00000128723.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5	ENSMUST00000124034.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5
mm39_v1_chr17_+_15277013_15277013	0.0110274	Nanog	ENSMUST00000228803.2|Ermard|ENSMUSG00000036552.20|ER membrane associated RNA degradation
mm39_v1_chr14_-_52252432_52252583	0.00954603	Nanog	ENSMUST00000226527.2|Zfp219|ENSMUSG00000049295.18|zinc finger protein 219
mm39_v1_chr11_-_69791712_69791755	0.00870527	Nanog	ENSMUST00000108621.9|2810408A11Rik|ENSMUSG00000018570.18|RIKEN cDNA 2810408A11 gene	ENSMUST00000100969.9|2810408A11Rik|ENSMUSG00000018570.18|RIKEN cDNA 2810408A11 gene
mm39_v1_chr11_-_69791756_69791767	0.00701785	Nanog	ENSMUST00000018714.13|2810408A11Rik|ENSMUSG00000018570.18|RIKEN cDNA 2810408A11 gene	ENSMUST00000128046.2|2810408A11Rik|ENSMUSG00000018570.18|RIKEN cDNA 2810408A11 gene
mm39_v1_chr3_+_103740056_103740156	0.00653015	Nanog	ENSMUST00000106822.2|Bcl2l15|ENSMUSG00000044165.13|BCLl2-like 15
mm39_v1_chr19_-_13074935_13074935	0.00272695	Nanog	ENSMUST00000214561.3|Olfr1457|ENSMUSG00000061637.6|olfactory receptor 1457
mm39_v1_chr6_+_41204430_41204464	0.00252301	Nanog	ENSMUST00000193064.2|Trbv26|ENSMUSG00000076479.4|T cell receptor beta, variable 26	ENSMUST00000103280.3|Trbv26|ENSMUSG00000076479.4|T cell receptor beta, variable 26
mm39_v1_chr10_+_59239466_59239491	0.000370342	Nanog	ENSMUST00000009790.14|Pla2g12b|ENSMUSG00000009646.14|phospholipase A2, group XIIB
