mm39_v1_chr4_-_131802561_131802603	1.73564	Nkx1-1_Nkx1-2	ENSMUST00000105970.8|Epb41|ENSMUSG00000028906.18|erythrocyte membrane protein band 4.1	ENSMUST00000105975.8|Epb41|ENSMUSG00000028906.18|erythrocyte membrane protein band 4.1
mm39_v1_chr6_+_29694181_29694247	1.60924	Nkx1-1_Nkx1-2	ENSMUST00000046750.14|Tspan33|ENSMUSG00000001763.15|tetraspanin 33	ENSMUST00000115250.4|Tspan33|ENSMUSG00000001763.15|tetraspanin 33
mm39_v1_chr4_-_131802606_131802652	1.5259	Nkx1-1_Nkx1-2	ENSMUST00000146021.8|Epb41|ENSMUSG00000028906.18|erythrocyte membrane protein band 4.1
mm39_v1_chr11_-_86999481_86999545	1.46993	Nkx1-1_Nkx1-2	ENSMUST00000051395.9|Prr11|ENSMUSG00000020493.9|proline rich 11
mm39_v1_chr9_-_20871081_20871184	1.13593	Nkx1-1_Nkx1-2	ENSMUST00000177754.9|Dnmt1|ENSMUSG00000004099.17|DNA methyltransferase (cytosine-5) 1
mm39_v1_chr14_+_46997984_46998003	1.06739	Nkx1-1_Nkx1-2	ENSMUST00000067426.6|Cdkn3|ENSMUSG00000037628.11|cyclin-dependent kinase inhibitor 3
mm39_v1_chr1_-_173161069_173161088	1.0292	Nkx1-1_Nkx1-2	ENSMUST00000038227.6|Ackr1|ENSMUSG00000037872.6|atypical chemokine receptor 1 (Duffy blood group)
mm39_v1_chr7_-_44578834_44578942	1.02392	Nkx1-1_Nkx1-2	ENSMUST00000107857.11|Ap2a1|ENSMUSG00000060279.15|adaptor-related protein complex 2, alpha 1 subunit	ENSMUST00000167930.8|Ap2a1|ENSMUSG00000060279.15|adaptor-related protein complex 2, alpha 1 subunit	ENSMUST00000085399.13|Ap2a1|ENSMUSG00000060279.15|adaptor-related protein complex 2, alpha 1 subunit	ENSMUST00000166972.9|Ap2a1|ENSMUSG00000060279.15|adaptor-related protein complex 2, alpha 1 subunit
mm39_v1_chr11_+_87000032_87000065	0.943041	Nkx1-1_Nkx1-2	ENSMUST00000020794.6|Ska2|ENSMUSG00000020492.12|spindle and kinetochore associated complex subunit 2
mm39_v1_chr11_+_43572825_43572918	0.756429	Nkx1-1_Nkx1-2	ENSMUST00000061070.6|Pwwp2a|ENSMUSG00000044950.8|PWWP domain containing 2A	ENSMUST00000094294.5|Pwwp2a|ENSMUSG00000044950.8|PWWP domain containing 2A
mm39_v1_chr11_+_99748741_99748744	0.719941	Nkx1-1_Nkx1-2	ENSMUST00000107434.2|Gm11568|ENSMUSG00000069717.8|predicted gene 11568
mm39_v1_chr5_+_30824121_30824307	0.694199	Nkx1-1_Nkx1-2	ENSMUST00000144742.6|Cenpa|ENSMUSG00000029177.10|centromere protein A	ENSMUST00000149759.2|Cenpa|ENSMUSG00000029177.10|centromere protein A	ENSMUST00000199320.5|Cenpa|ENSMUSG00000029177.10|centromere protein A
mm39_v1_chr14_+_46998004_46998013	0.664563	Nkx1-1_Nkx1-2	ENSMUST00000227149.2|Cdkn3|ENSMUSG00000037628.11|cyclin-dependent kinase inhibitor 3
mm39_v1_chr11_+_121128042_121128116	0.652525	Nkx1-1_Nkx1-2	ENSMUST00000103015.4|Narf|ENSMUSG00000000056.8|nuclear prelamin A recognition factor
mm39_v1_chrX_+_9751861_9751861	0.616127	Nkx1-1_Nkx1-2	ENSMUST00000067529.9|Sytl5|ENSMUSG00000054453.12|synaptotagmin-like 5	ENSMUST00000086165.4|Sytl5|ENSMUSG00000054453.12|synaptotagmin-like 5
mm39_v1_chr1_+_82817794_82817893	0.571277	Nkx1-1_Nkx1-2	ENSMUST00000186043.2|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr4_-_140501507_140501547	0.520229	Nkx1-1_Nkx1-2	ENSMUST00000026381.7|Padi4|ENSMUSG00000025330.7|peptidyl arginine deiminase, type IV
mm39_v1_chr2_+_36120438_36120557	0.488915	Nkx1-1_Nkx1-2	ENSMUST00000062069.6|Ptgs1|ENSMUSG00000047250.14|prostaglandin-endoperoxide synthase 1
mm39_v1_chr3_-_90297187_90297234	0.463279	Nkx1-1_Nkx1-2	ENSMUST00000029541.12|Slc27a3|ENSMUSG00000027932.15|solute carrier family 27 (fatty acid transporter), member 3
mm39_v1_chr14_+_65612788_65612842	0.452668	Nkx1-1_Nkx1-2	ENSMUST00000224687.2|Zfp395|ENSMUSG00000034522.11|zinc finger protein 395
mm39_v1_chr1_-_91386976_91387058	0.442022	Nkx1-1_Nkx1-2	ENSMUST00000069620.10|Per2|ENSMUSG00000055866.10|period circadian clock 2
mm39_v1_chr19_+_5540483_5540517	0.441135	Nkx1-1_Nkx1-2	ENSMUST00000209469.2|Cfl1|ENSMUSG00000056201.9|cofilin 1, non-muscle	ENSMUST00000116560.3|Cfl1|ENSMUSG00000056201.9|cofilin 1, non-muscle
mm39_v1_chr6_-_128339775_128339889	0.437999	Nkx1-1_Nkx1-2	ENSMUST00000112152.8|Rhno1|ENSMUSG00000048668.17|RAD9-HUS1-RAD1 interacting nuclear orphan 1	ENSMUST00000057421.15|Rhno1|ENSMUSG00000048668.17|RAD9-HUS1-RAD1 interacting nuclear orphan 1	ENSMUST00000112151.2|Rhno1|ENSMUSG00000048668.17|RAD9-HUS1-RAD1 interacting nuclear orphan 1
mm39_v1_chr5_-_122959361_122959402	0.432684	Nkx1-1_Nkx1-2	ENSMUST00000086216.9|Anapc5|ENSMUSG00000029472.14|anaphase-promoting complex subunit 5
mm39_v1_chr7_+_29683373_29683390	0.423963	Nkx1-1_Nkx1-2	ENSMUST00000148442.8|Zfp568|ENSMUSG00000074221.13|zinc finger protein 568
mm39_v1_chr12_-_40087393_40087428	0.417023	Nkx1-1_Nkx1-2	ENSMUST00000146905.2|Arl4a|ENSMUSG00000047446.19|ADP-ribosylation factor-like 4A
mm39_v1_chr4_-_88595161_88595161	0.415455	Nkx1-1_Nkx1-2	ENSMUST00000105148.2|Ifna16|ENSMUSG00000078355.2|interferon alpha 16
mm39_v1_chr9_-_44024767_44024824	0.404864	Nkx1-1_Nkx1-2	ENSMUST00000216511.2|Rnf26|ENSMUSG00000053128.16|ring finger protein 26	ENSMUST00000185479.2|Gm49380|ENSMUSG00000111409.2|predicted gene, 49380	ENSMUST00000056328.6|Rnf26|ENSMUSG00000053128.16|ring finger protein 26
mm39_v1_chr19_-_40371016_40371077	0.374808	Nkx1-1_Nkx1-2	ENSMUST00000225766.3|Sorbs1|ENSMUSG00000025006.19|sorbin and SH3 domain containing 1
mm39_v1_chr14_-_52341426_52341468	0.364498	Nkx1-1_Nkx1-2	ENSMUST00000227536.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000227195.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228815.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228198.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000227458.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228232.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000227242.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228748.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C
mm39_v1_chr5_-_137101108_137101131	0.360387	Nkx1-1_Nkx1-2	ENSMUST00000077523.4|Serpine1|ENSMUSG00000037411.11|serine (or cysteine) peptidase inhibitor, clade E, member 1	ENSMUST00000041388.11|Serpine1|ENSMUSG00000037411.11|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm39_v1_chr10_+_128173603_128173628	0.324967	Nkx1-1_Nkx1-2	ENSMUST00000005826.9|Cs|ENSMUSG00000005683.9|citrate synthase
mm39_v1_chr19_+_5540591_5540633	0.324639	Nkx1-1_Nkx1-2	ENSMUST00000237122.2|Cfl1|ENSMUSG00000056201.9|cofilin 1, non-muscle
mm39_v1_chr14_-_52341472_52341485	0.313184	Nkx1-1_Nkx1-2	ENSMUST00000111610.12|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000164655.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C
mm39_v1_chr9_-_66033841_66033885	0.296678	Nkx1-1_Nkx1-2	ENSMUST00000137542.2|Snx1|ENSMUSG00000032382.15|sorting nexin 1
mm39_v1_chr3_-_89009153_89009205	0.281425	Nkx1-1_Nkx1-2	ENSMUST00000199668.3|Fdps|ENSMUSG00000059743.13|farnesyl diphosphate synthetase	ENSMUST00000196709.5|Fdps|ENSMUSG00000059743.13|farnesyl diphosphate synthetase
mm39_v1_chr18_+_4993795_4993818	0.269745	Nkx1-1_Nkx1-2	ENSMUST00000153016.8|Svil|ENSMUSG00000024236.19|supervillin
mm39_v1_chr5_+_143846782_143846875	0.267996	Nkx1-1_Nkx1-2	ENSMUST00000148011.8|Pms2|ENSMUSG00000079109.12|PMS1 homolog2, mismatch repair system component	ENSMUST00000110709.7|Pms2|ENSMUSG00000079109.12|PMS1 homolog2, mismatch repair system component
mm39_v1_chr19_+_41921903_41921979	0.267597	Nkx1-1_Nkx1-2	ENSMUST00000224258.2|Zdhhc16|ENSMUSG00000025157.9|zinc finger, DHHC domain containing 16	ENSMUST00000026154.9|Zdhhc16|ENSMUSG00000025157.9|zinc finger, DHHC domain containing 16	ENSMUST00000224896.2|Zdhhc16|ENSMUSG00000025157.9|zinc finger, DHHC domain containing 16
mm39_v1_chr7_+_101545547_101545638	0.267042	Nkx1-1_Nkx1-2	ENSMUST00000035395.14|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000106973.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000144207.9|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr4_-_43710231_43710255	0.266713	Nkx1-1_Nkx1-2	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chr17_-_57338468_57338538	0.265914	Nkx1-1_Nkx1-2	ENSMUST00000007814.10|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein	ENSMUST00000233480.2|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein
mm39_v1_chr11_+_104468107_104468213	0.262125	Nkx1-1_Nkx1-2	ENSMUST00000106956.10|Myl4|ENSMUSG00000061086.13|myosin, light polypeptide 4
mm39_v1_chr7_-_110673269_110673456	0.258907	Nkx1-1_Nkx1-2	ENSMUST00000163014.2|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2
mm39_v1_chr9_+_50686647_50686670	0.256493	Nkx1-1_Nkx1-2	ENSMUST00000159576.2|Alg9|ENSMUSG00000032059.14|asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)
mm39_v1_chr12_+_17778198_17778227	0.253465	Nkx1-1_Nkx1-2	ENSMUST00000222944.2|Hpcal1|ENSMUSG00000071379.3|hippocalcin-like 1
mm39_v1_chr3_-_89009214_89009275	0.242654	Nkx1-1_Nkx1-2	ENSMUST00000081848.13|Fdps|ENSMUSG00000059743.13|farnesyl diphosphate synthetase
mm39_v1_chr7_-_100613579_100613615	0.237854	Nkx1-1_Nkx1-2	ENSMUST00000060174.6|P2ry6|ENSMUSG00000048779.6|pyrimidinergic receptor P2Y, G-protein coupled, 6
mm39_v1_chr19_+_60744385_60744432	0.233497	Nkx1-1_Nkx1-2	ENSMUST00000088237.6|Nanos1|ENSMUSG00000072437.5|nanos C2HC-type zinc finger 1
mm39_v1_chr2_+_154390808_154390862	0.228701	Nkx1-1_Nkx1-2	ENSMUST00000045116.11|1700003F12Rik|ENSMUSG00000038523.11|RIKEN cDNA 1700003F12 gene	ENSMUST00000109709.4|1700003F12Rik|ENSMUSG00000038523.11|RIKEN cDNA 1700003F12 gene
mm39_v1_chr7_-_26895141_26895192	0.225286	Nkx1-1_Nkx1-2	ENSMUST00000163311.9|Snrpa|ENSMUSG00000061479.16|small nuclear ribonucleoprotein polypeptide A	ENSMUST00000126211.2|Snrpa|ENSMUSG00000061479.16|small nuclear ribonucleoprotein polypeptide A
mm39_v1_chr2_+_85809620_85809620	0.221692	Nkx1-1_Nkx1-2	ENSMUST00000056849.3|Olfr1030|ENSMUSG00000044923.5|olfactory receptor 1030
mm39_v1_chr15_+_97990431_97990525	0.207538	Nkx1-1_Nkx1-2	ENSMUST00000229280.2|Pfkm|ENSMUSG00000033065.15|phosphofructokinase, muscle	ENSMUST00000163507.8|Pfkm|ENSMUSG00000033065.15|phosphofructokinase, muscle	ENSMUST00000230445.2|Pfkm|ENSMUSG00000033065.15|phosphofructokinase, muscle
mm39_v1_chr7_+_101546059_101546168	0.207152	Nkx1-1_Nkx1-2	ENSMUST00000143835.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr11_-_99121822_99121844	0.20543	Nkx1-1_Nkx1-2	ENSMUST00000103133.4|Smarce1|ENSMUSG00000037935.17|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm39_v1_chr6_-_128339458_128339542	0.203366	Nkx1-1_Nkx1-2	ENSMUST00000155573.3|Rhno1|ENSMUSG00000048668.17|RAD9-HUS1-RAD1 interacting nuclear orphan 1
mm39_v1_chr7_+_103628383_103628383	0.195484	Nkx1-1_Nkx1-2	ENSMUST00000098185.2|Olfr635|ENSMUSG00000094520.5|olfactory receptor 635
mm39_v1_chr2_-_168607166_168607181	0.19405	Nkx1-1_Nkx1-2	ENSMUST00000137536.2|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4
mm39_v1_chr15_-_77840856_77840927	0.18838	Nkx1-1_Nkx1-2	ENSMUST00000117725.2|Foxred2|ENSMUSG00000016552.14|FAD-dependent oxidoreductase domain containing 2	ENSMUST00000016696.13|Foxred2|ENSMUSG00000016552.14|FAD-dependent oxidoreductase domain containing 2
mm39_v1_chr5_+_138115165_138115303	0.185346	Nkx1-1_Nkx1-2	ENSMUST00000062350.15|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21	ENSMUST00000110961.9|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21	ENSMUST00000080732.10|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21	ENSMUST00000110960.9|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21	ENSMUST00000142185.8|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21	ENSMUST00000136425.2|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21	ENSMUST00000110959.2|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21
mm39_v1_chr19_-_29344694_29344709	0.175994	Nkx1-1_Nkx1-2	ENSMUST00000138051.2|Plgrkt|ENSMUSG00000016495.13|plasminogen receptor, C-terminal lysine transmembrane protein
mm39_v1_chr11_+_104467791_104467811	0.175646	Nkx1-1_Nkx1-2	ENSMUST00000106957.8|Myl4|ENSMUSG00000061086.13|myosin, light polypeptide 4
mm39_v1_chr3_+_94320548_94320708	0.172585	Nkx1-1_Nkx1-2	ENSMUST00000166032.8|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000200486.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000196386.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000045245.10|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000197901.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000198041.2|Gm42463|ENSMUSG00000106032.2|predicted gene 42463
mm39_v1_chr19_+_29344846_29344868	0.172334	Nkx1-1_Nkx1-2	ENSMUST00000016640.8|Cd274|ENSMUSG00000016496.8|CD274 antigen
mm39_v1_chr7_+_128346655_128346745	0.159807	Nkx1-1_Nkx1-2	ENSMUST00000042942.10|Sec23ip|ENSMUSG00000055319.9|Sec23 interacting protein
mm39_v1_chr17_+_7437500_7437532	0.156803	Nkx1-1_Nkx1-2	ENSMUST00000024575.8|Rps6ka2|ENSMUSG00000023809.11|ribosomal protein S6 kinase, polypeptide 2
mm39_v1_chr2_-_45002902_45003021	0.156032	Nkx1-1_Nkx1-2	ENSMUST00000076836.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000176732.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000200844.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr2_-_111843053_111843053	0.154059	Nkx1-1_Nkx1-2	ENSMUST00000213559.3|Olfr1310|ENSMUSG00000108827.4|olfactory receptor 1310
mm39_v1_chr9_-_85631361_85631391	0.154	Nkx1-1_Nkx1-2	ENSMUST00000039213.15|Ibtk|ENSMUSG00000035941.16|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm39_v1_chr1_-_131441962_131441975	0.147279	Nkx1-1_Nkx1-2	ENSMUST00000185445.3|Srgap2|ENSMUSG00000026425.16|SLIT-ROBO Rho GTPase activating protein 2
mm39_v1_chr11_-_99134885_99134964	0.145742	Nkx1-1_Nkx1-2	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr10_+_94411119_94411152	0.145084	Nkx1-1_Nkx1-2	ENSMUST00000121471.8|Tmcc3|ENSMUSG00000020023.19|transmembrane and coiled coil domains 3
mm39_v1_chr6_-_68887922_68887943	0.142345	Nkx1-1_Nkx1-2	ENSMUST00000103337.3|Igkv4-86|ENSMUSG00000076536.4|immunoglobulin kappa variable 4-86
mm39_v1_chr5_+_134961246_134961378	0.140659	Nkx1-1_Nkx1-2	ENSMUST00000111218.8|Mettl27|ENSMUSG00000040557.15|methyltransferase like 27	ENSMUST00000136246.5|Mettl27|ENSMUSG00000040557.15|methyltransferase like 27	ENSMUST00000201847.3|Mettl27|ENSMUSG00000040557.15|methyltransferase like 27
mm39_v1_chr19_+_8779903_8779922	0.140602	Nkx1-1_Nkx1-2	ENSMUST00000172175.3|Zbtb3|ENSMUSG00000071661.8|zinc finger and BTB domain containing 3
mm39_v1_chr18_-_24736848_24736900	0.140555	Nkx1-1_Nkx1-2	ENSMUST00000070726.10|Slc39a6|ENSMUSG00000024270.12|solute carrier family 39 (metal ion transporter), member 6
mm39_v1_chr13_+_94219934_94220019	0.139387	Nkx1-1_Nkx1-2	ENSMUST00000156071.2|Lhfpl2|ENSMUSG00000045312.13|lipoma HMGIC fusion partner-like 2
mm39_v1_chr1_+_83022653_83022653	0.137243	Nkx1-1_Nkx1-2	ENSMUST00000222567.2|Gm47969|ENSMUSG00000113267.2|predicted gene, 47969
mm39_v1_chr2_+_110427643_110427661	0.135557	Nkx1-1_Nkx1-2	ENSMUST00000045972.13|Slc5a12|ENSMUSG00000041644.15|solute carrier family 5 (sodium/glucose cotransporter), member 12	ENSMUST00000111026.3|Slc5a12|ENSMUSG00000041644.15|solute carrier family 5 (sodium/glucose cotransporter), member 12
mm39_v1_chr10_+_80973787_80973827	0.128861	Nkx1-1_Nkx1-2	ENSMUST00000117956.2|Zbtb7a|ENSMUSG00000035011.16|zinc finger and BTB domain containing 7a
mm39_v1_chr11_-_99742434_99742458	0.127027	Nkx1-1_Nkx1-2	ENSMUST00000107437.2|Krtap4-16|ENSMUSG00000046474.10|keratin associated protein 4-16
mm39_v1_chr6_-_57340712_57340712	0.124998	Nkx1-1_Nkx1-2	ENSMUST00000228156.2|Vmn1r17|ENSMUSG00000115644.2|vomeronasal 1 receptor 17	ENSMUST00000227186.2|Vmn1r17|ENSMUSG00000115644.2|vomeronasal 1 receptor 17	ENSMUST00000228294.2|Vmn1r17|ENSMUSG00000115644.2|vomeronasal 1 receptor 17	ENSMUST00000228342.2|Vmn1r17|ENSMUSG00000115644.2|vomeronasal 1 receptor 17
mm39_v1_chr15_+_16728842_16728842	0.123302	Nkx1-1_Nkx1-2	ENSMUST00000228307.2|Cdh9|ENSMUSG00000025370.8|cadherin 9
mm39_v1_chr7_-_30251680_30251741	0.116443	Nkx1-1_Nkx1-2	ENSMUST00000215288.2|Proser3|ENSMUSG00000036864.17|proline and serine rich 3	ENSMUST00000108165.8|Proser3|ENSMUSG00000036864.17|proline and serine rich 3	ENSMUST00000153594.3|Proser3|ENSMUSG00000036864.17|proline and serine rich 3
mm39_v1_chr3_+_75982890_75982890	0.116245	Nkx1-1_Nkx1-2	ENSMUST00000160261.8|Fstl5|ENSMUSG00000034098.15|follistatin-like 5
mm39_v1_chr6_-_58452315_58452315	0.116064	Nkx1-1_Nkx1-2	ENSMUST00000177318.3|Vmn1r31|ENSMUSG00000115404.2|vomeronasal 1 receptor 31	ENSMUST00000176147.9|Vmn1r31|ENSMUSG00000115404.2|vomeronasal 1 receptor 31	ENSMUST00000176023.3|Vmn1r31|ENSMUSG00000115404.2|vomeronasal 1 receptor 31	ENSMUST00000228586.2|Vmn1r31|ENSMUSG00000115404.2|vomeronasal 1 receptor 31
mm39_v1_chr18_-_24736521_24736609	0.111939	Nkx1-1_Nkx1-2	ENSMUST00000154205.2|Slc39a6|ENSMUSG00000024270.12|solute carrier family 39 (metal ion transporter), member 6
mm39_v1_chr19_-_24178000_24178016	0.101075	Nkx1-1_Nkx1-2	ENSMUST00000233658.3|Tjp2|ENSMUSG00000024812.12|tight junction protein 2
mm39_v1_chr5_-_143846600_143846665	0.0970762	Nkx1-1_Nkx1-2	ENSMUST00000031613.11|Aimp2|ENSMUSG00000029610.14|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	ENSMUST00000100483.3|Aimp2|ENSMUSG00000029610.14|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
mm39_v1_chr1_-_165462020_165462110	0.0968788	Nkx1-1_Nkx1-2	ENSMUST00000194437.6|Mpzl1|ENSMUSG00000026566.16|myelin protein zero-like 1	ENSMUST00000068705.13|Mpzl1|ENSMUSG00000026566.16|myelin protein zero-like 1	ENSMUST00000111435.9|Mpzl1|ENSMUSG00000026566.16|myelin protein zero-like 1	ENSMUST00000193023.2|Mpzl1|ENSMUSG00000026566.16|myelin protein zero-like 1
mm39_v1_chr1_+_173093568_173093568	0.0962328	Nkx1-1_Nkx1-2	ENSMUST00000213420.2|Olfr418|ENSMUSG00000049605.4|olfactory receptor 418
mm39_v1_chr4_-_141327146_141327235	0.0778886	Nkx1-1_Nkx1-2	ENSMUST00000141518.8|Fblim1|ENSMUSG00000006219.13|filamin binding LIM protein 1	ENSMUST00000127455.8|Fblim1|ENSMUSG00000006219.13|filamin binding LIM protein 1	ENSMUST00000105784.8|Fblim1|ENSMUSG00000006219.13|filamin binding LIM protein 1
mm39_v1_chr8_+_34089597_34089684	0.0708088	Nkx1-1_Nkx1-2	ENSMUST00000009774.11|Ppp2cb|ENSMUSG00000009630.11|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
mm39_v1_chr14_+_13803477_13803536	0.0684848	Nkx1-1_Nkx1-2	ENSMUST00000102996.4|Cfap20dc|ENSMUSG00000021747.13|CFAP20 domain containing
mm39_v1_chr2_-_165230165_165230235	0.0660903	Nkx1-1_Nkx1-2	ENSMUST00000103084.4|Zfp334|ENSMUSG00000017667.10|zinc finger protein 334
mm39_v1_chr10_+_97442727_97442762	0.0640946	Nkx1-1_Nkx1-2	ENSMUST00000105286.4|Kera|ENSMUSG00000019932.9|keratocan
mm39_v1_chr6_-_23650205_23650271	0.0633366	Nkx1-1_Nkx1-2	ENSMUST00000115354.2|Rnf133|ENSMUSG00000051956.5|ring finger protein 133
mm39_v1_chr1_+_172383499_172383509	0.0618994	Nkx1-1_Nkx1-2	ENSMUST00000061835.10|Vsig8|ENSMUSG00000049598.10|V-set and immunoglobulin domain containing 8
mm39_v1_chr14_+_25980463_25980463	0.0618719	Nkx1-1_Nkx1-2	ENSMUST00000173155.8|Duxbl1|ENSMUSG00000048502.15|double homeobox B-like 1
mm39_v1_chr16_+_35861554_35861605	0.0526655	Nkx1-1_Nkx1-2	ENSMUST00000042203.10|Wdr5b|ENSMUSG00000034379.10|WD repeat domain 5B
mm39_v1_chrX_+_56257374_56257514	0.0516507	Nkx1-1_Nkx1-2	ENSMUST00000033466.2|Cd40lg|ENSMUSG00000031132.2|CD40 ligand
mm39_v1_chr15_+_41694317_41694397	0.0500351	Nkx1-1_Nkx1-2	ENSMUST00000166917.3|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1	ENSMUST00000230127.2|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1	ENSMUST00000230131.2|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1
mm39_v1_chr19_+_12364643_12364664	0.0481597	Nkx1-1_Nkx1-2	ENSMUST00000217062.3|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440	ENSMUST00000216145.2|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440	ENSMUST00000213657.2|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440
mm39_v1_chr2_-_157188568_157188583	0.0479923	Nkx1-1_Nkx1-2	ENSMUST00000029172.2|Ghrh|ENSMUSG00000027643.10|growth hormone releasing hormone
mm39_v1_chr15_+_81548090_81548158	0.0475501	Nkx1-1_Nkx1-2	ENSMUST00000023029.15|L3mbtl2|ENSMUSG00000022394.15|L3MBTL2 polycomb repressive complex 1 subunit	ENSMUST00000174229.8|L3mbtl2|ENSMUSG00000022394.15|L3MBTL2 polycomb repressive complex 1 subunit	ENSMUST00000172748.8|L3mbtl2|ENSMUSG00000022394.15|L3MBTL2 polycomb repressive complex 1 subunit
mm39_v1_chr17_-_37430949_37430975	0.0472477	Nkx1-1_Nkx1-2	ENSMUST00000214994.2|Olfr92|ENSMUSG00000096477.3|olfactory receptor 92	ENSMUST00000216341.2|Olfr92|ENSMUSG00000096477.3|olfactory receptor 92
mm39_v1_chr7_-_11414074_11414074	0.0464588	Nkx1-1_Nkx1-2	ENSMUST00000227010.2|Vmn1r72|ENSMUSG00000095430.4|vomeronasal 1 receptor 72	ENSMUST00000209638.3|Vmn1r72|ENSMUSG00000095430.4|vomeronasal 1 receptor 72
mm39_v1_chr6_-_128339654_128339704	0.0437046	Nkx1-1_Nkx1-2	ENSMUST00000203719.2|Rhno1|ENSMUSG00000048668.17|RAD9-HUS1-RAD1 interacting nuclear orphan 1
mm39_v1_chr4_-_119151717_119151801	0.0427399	Nkx1-1_Nkx1-2	ENSMUST00000079644.13|Ybx1|ENSMUSG00000028639.15|Y box protein 1
mm39_v1_chr2_-_89855921_89855921	0.0426677	Nkx1-1_Nkx1-2	ENSMUST00000216616.3|Olfr1264|ENSMUSG00000075069.4|olfactory receptor 1264
mm39_v1_chrX_-_73129195_73129296	0.0419426	Nkx1-1_Nkx1-2	ENSMUST00000140399.3|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000123362.8|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000100750.10|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000033770.13|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2
mm39_v1_chr1_+_190660689_190660749	0.0396409	Nkx1-1_Nkx1-2	ENSMUST00000066632.14|Angel2|ENSMUSG00000026634.17|angel homolog 2	ENSMUST00000110899.7|Angel2|ENSMUSG00000026634.17|angel homolog 2
mm39_v1_chr19_-_12313274_12313274	0.0389991	Nkx1-1_Nkx1-2	ENSMUST00000208398.3|Olfr1438-ps1|ENSMUSG00000109328.3|olfactory receptor 1438, pseudogene 1
mm39_v1_chr14_-_52277310_52277358	0.0384405	Nkx1-1_Nkx1-2	ENSMUST00000216907.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221	ENSMUST00000214071.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221	ENSMUST00000216188.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221
mm39_v1_chr7_+_103652466_103652466	0.0323768	Nkx1-1_Nkx1-2	ENSMUST00000209757.3|Olfr638|ENSMUSG00000094063.5|olfactory receptor 638
mm39_v1_chr12_+_108145802_108145842	0.0289247	Nkx1-1_Nkx1-2	ENSMUST00000221167.2|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr12_+_84463970_84464097	0.0282883	Nkx1-1_Nkx1-2	ENSMUST00000183146.2|Rnf113a2|ENSMUSG00000098134.2|ring finger protein 113A2
mm39_v1_chr16_-_29363671_29363687	0.0239635	Nkx1-1_Nkx1-2	ENSMUST00000039090.9|Atp13a4|ENSMUSG00000038094.16|ATPase type 13A4
mm39_v1_chr5_+_134961205_134961239	0.0228811	Nkx1-1_Nkx1-2	ENSMUST00000047196.14|Mettl27|ENSMUSG00000040557.15|methyltransferase like 27	ENSMUST00000111221.9|Mettl27|ENSMUSG00000040557.15|methyltransferase like 27	ENSMUST00000111219.8|Mettl27|ENSMUSG00000040557.15|methyltransferase like 27	ENSMUST00000068617.12|Mettl27|ENSMUSG00000040557.15|methyltransferase like 27
mm39_v1_chrX_+_159551009_159551114	0.0216403	Nkx1-1_Nkx1-2	ENSMUST00000033650.14|Rs1|ENSMUSG00000031293.14|retinoschisis (X-linked, juvenile) 1 (human)
mm39_v1_chr10_+_129539079_129539079	0.0194811	Nkx1-1_Nkx1-2	ENSMUST00000213331.2|Olfr804|ENSMUSG00000095401.3|olfactory receptor 804
mm39_v1_chr12_+_52746158_52746186	0.016339	Nkx1-1_Nkx1-2	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr11_-_22236795_22236840	0.0126244	Nkx1-1_Nkx1-2	ENSMUST00000180360.8|Ehbp1|ENSMUSG00000042302.15|EH domain binding protein 1	ENSMUST00000109563.9|Ehbp1|ENSMUSG00000042302.15|EH domain binding protein 1
mm39_v1_chr8_+_22329942_22329942	0.0102654	Nkx1-1_Nkx1-2	ENSMUST00000006745.4|Defb2|ENSMUSG00000006570.4|defensin beta 2
mm39_v1_chr6_-_129752812_129752812	0.0101503	Nkx1-1_Nkx1-2	ENSMUST00000095409.3|Klrh1|ENSMUSG00000071158.10|killer cell lectin-like receptor subfamily H, member 1
mm39_v1_chrX_-_158921370_158921431	0.00817589	Nkx1-1_Nkx1-2	ENSMUST00000033662.9|Pdha1|ENSMUSG00000031299.11|pyruvate dehydrogenase E1 alpha 1
mm39_v1_chr2_+_85804239_85804239	0.00577414	Nkx1-1_Nkx1-2	ENSMUST00000217244.2|Olfr1029|ENSMUSG00000059873.5|olfactory receptor 1029
mm39_v1_chr2_-_102230602_102230743	0.00314365	Nkx1-1_Nkx1-2	ENSMUST00000152929.2|Trim44|ENSMUSG00000027189.17|tripartite motif-containing 44
