GSE58827: Dynamics of the Mouse Liver

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Cdc5l Links Ensembl NCBI MGI UniProt	ENSMUSG00000023932.10	cell division cycle 5-like (S. pombe)

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Cdc5l	mm39_v1_chr17_-_45744637_45744671	-0.23	1.9e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_+_58645189 Show fit	0.92	ENSMUST00000102755.4 ENSMUST00000230627.2 ENSMUST00000229923.2	Upp2 Links Ensembl NCBI MGI UniProt Show fit	uridine phosphorylase 2
chr7_+_51537645 Show fit	0.56	ENSMUST00000208711.2	Gas2 Links Ensembl NCBI MGI UniProt Show fit	growth arrest specific 2
chr5_-_136911969 Show fit	0.34	ENSMUST00000057497.13 ENSMUST00000111103.2	Col26a1 Links Ensembl NCBI MGI UniProt Show fit	collagen, type XXVI, alpha 1
chr8_+_110717062 Show fit	0.31	ENSMUST00000001720.14 ENSMUST00000143741.2	Tat Links Ensembl NCBI MGI UniProt Show fit	tyrosine aminotransferase
chr3_-_82957104 Show fit	0.30	ENSMUST00000048246.5	Fgb Links Ensembl NCBI MGI UniProt Show fit	fibrinogen beta chain
chr3_+_137923521 Show fit	0.27	ENSMUST00000090171.7	Adh7 Links Ensembl NCBI MGI UniProt Show fit	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
chr10_+_17598961 Show fit	0.24	ENSMUST00000038107.9 ENSMUST00000219558.2 ENSMUST00000218370.2	Cited2 Links Ensembl NCBI MGI UniProt Show fit	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
chr14_+_66872699 Show fit	0.24	ENSMUST00000159365.8 ENSMUST00000054661.8 ENSMUST00000225182.2 ENSMUST00000159068.2	Adra1a Links Ensembl NCBI MGI UniProt Show fit	adrenergic receptor, alpha 1a
chr2_+_125876883 Show fit	0.24	ENSMUST00000110442.2	Fgf7 Links Ensembl NCBI MGI UniProt Show fit	fibroblast growth factor 7
chr7_-_101517874 Show fit	0.21	ENSMUST00000150184.2	Folr1 Links Ensembl NCBI MGI UniProt Show fit	folate receptor 1 (adult)
chr15_-_13173736 Show fit	0.20	ENSMUST00000036439.6	Cdh6 Links Ensembl NCBI MGI UniProt Show fit	cadherin 6
chr7_-_101518217 Show fit	0.20	ENSMUST00000123321.8	Folr1 Links Ensembl NCBI MGI UniProt Show fit	folate receptor 1 (adult)
chrX_-_50031587 Show fit	0.19	ENSMUST00000060650.7	Frmd7 Links Ensembl NCBI MGI UniProt Show fit	FERM domain containing 7
chr3_-_122910662 Show fit	0.17	ENSMUST00000051443.8	Synpo2 Links Ensembl NCBI MGI UniProt Show fit	synaptopodin 2
chr7_-_104611827 Show fit	0.15	ENSMUST00000214216.2	Olfr670 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 670
chr12_+_59176506 Show fit	0.15	ENSMUST00000175912.8 ENSMUST00000176892.8	Mia2 Links Ensembl NCBI MGI UniProt Show fit	MIA SH3 domain ER export factor 2
chr2_+_125876566 Show fit	0.14	ENSMUST00000064794.14	Fgf7 Links Ensembl NCBI MGI UniProt Show fit	fibroblast growth factor 7
chr11_+_97732108 Show fit	0.14	ENSMUST00000155954.3 ENSMUST00000164364.2 ENSMUST00000170806.2	B230217C12Rik Links Ensembl NCBI MGI UniProt Show fit	RIKEN cDNA B230217C12 gene
chr9_-_112016966 Show fit	0.13	ENSMUST00000178410.2 ENSMUST00000172380.10	Arpp21 Links Ensembl NCBI MGI UniProt Show fit	cyclic AMP-regulated phosphoprotein, 21
chr1_+_143516402 Show fit	0.13	ENSMUST00000038252.4	B3galt2 Links Ensembl NCBI MGI UniProt Show fit	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
chrX_-_93410383 Show fit	0.12	ENSMUST00000044989.12	Fam90a1b Links Ensembl NCBI MGI UniProt Show fit	family with sequence similarity 90, member A1B
chr12_+_59176543 Show fit	0.12	ENSMUST00000069430.15 ENSMUST00000177370.8	Mia2 Links Ensembl NCBI MGI UniProt Show fit	MIA SH3 domain ER export factor 2
chr7_-_103390529 Show fit	0.12	ENSMUST00000051346.5	Olfr629 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 629
chr11_+_59197746 Show fit	0.11	ENSMUST00000000128.10 ENSMUST00000108783.4	Wnt9a Links Ensembl NCBI MGI UniProt Show fit	wingless-type MMTV integration site family, member 9A
chr8_+_91681898 Show fit	0.11	ENSMUST00000209746.2	Chd9 Links Ensembl NCBI MGI UniProt Show fit	chromodomain helicase DNA binding protein 9
chr9_-_112016834 Show fit	0.11	ENSMUST00000111872.9 ENSMUST00000164754.9	Arpp21 Links Ensembl NCBI MGI UniProt Show fit	cyclic AMP-regulated phosphoprotein, 21
chr5_-_138278223 Show fit	0.11	ENSMUST00000014089.9 ENSMUST00000161827.8	Gpc2 Links Ensembl NCBI MGI UniProt Show fit	glypican 2 (cerebroglycan)
chr14_-_55204023 Show fit	0.10	ENSMUST00000124930.8	Myh6 Links Ensembl NCBI MGI UniProt Show fit	myosin, heavy polypeptide 6, cardiac muscle, alpha
chr10_+_23814470 Show fit	0.10	ENSMUST00000079134.5	Taar2 Links Ensembl NCBI MGI UniProt Show fit	trace amine-associated receptor 2
chr10_+_52267702 Show fit	0.10	ENSMUST00000067085.7	Nepn Links Ensembl NCBI MGI UniProt Show fit	nephrocan
chr5_+_88073483 Show fit	0.09	ENSMUST00000113271.3	Csn3 Links Ensembl NCBI MGI UniProt Show fit	casein kappa
chr5_+_88073438 Show fit	0.09	ENSMUST00000001667.13 ENSMUST00000113267.8	Csn3 Links Ensembl NCBI MGI UniProt Show fit	casein kappa
chr15_-_50746202 Show fit	0.09	ENSMUST00000184885.8	Trps1 Links Ensembl NCBI MGI UniProt Show fit	transcriptional repressor GATA binding 1
chr6_+_6863269 Show fit	0.09	ENSMUST00000171311.8 ENSMUST00000160937.9	Dlx6 Links Ensembl NCBI MGI UniProt Show fit	distal-less homeobox 6
chr5_+_67125902 Show fit	0.09	ENSMUST00000127184.8	Limch1 Links Ensembl NCBI MGI UniProt Show fit	LIM and calponin homology domains 1
chr14_-_55204383 Show fit	0.09	ENSMUST00000111456.2	Myh6 Links Ensembl NCBI MGI UniProt Show fit	myosin, heavy polypeptide 6, cardiac muscle, alpha
chr10_+_12881087 Show fit	0.09	ENSMUST00000105139.5	Sf3b5 Links Ensembl NCBI MGI UniProt Show fit	splicing factor 3b, subunit 5
chr7_+_5086702 Show fit	0.09	ENSMUST00000208634.2	Epn1 Links Ensembl NCBI MGI UniProt Show fit	epsin 1
chr1_+_60785517 Show fit	0.09	ENSMUST00000027165.3	Cd28 Links Ensembl NCBI MGI UniProt Show fit	CD28 antigen
chr18_-_22983794 Show fit	0.09	ENSMUST00000092015.11 ENSMUST00000069215.13	Nol4 Links Ensembl NCBI MGI UniProt Show fit	nucleolar protein 4
chr11_-_78642480 Show fit	0.09	ENSMUST00000059468.6	Ccnq Links Ensembl NCBI MGI UniProt Show fit	cyclin Q
chr10_-_107747995 Show fit	0.08	ENSMUST00000165341.5	Otogl Links Ensembl NCBI MGI UniProt Show fit	otogelin-like
chr3_+_93376058 Show fit	0.08	ENSMUST00000029516.3	Tchhl1 Links Ensembl NCBI MGI UniProt Show fit	trichohyalin-like 1
chr5_+_104447037 Show fit	0.08	ENSMUST00000031246.9	Ibsp Links Ensembl NCBI MGI UniProt Show fit	integrin binding sialoprotein
chr17_+_47451868 Show fit	0.08	ENSMUST00000190080.9	Trerf1 Links Ensembl NCBI MGI UniProt Show fit	transcriptional regulating factor 1
chr2_+_106525938 Show fit	0.08	ENSMUST00000016530.14	Mpped2 Links Ensembl NCBI MGI UniProt Show fit	metallophosphoesterase domain containing 2
chr5_-_86666408 Show fit	0.08	ENSMUST00000140095.2 ENSMUST00000134179.8	Tmprss11g Links Ensembl NCBI MGI UniProt Show fit	transmembrane protease, serine 11g
chr14_-_55204054 Show fit	0.07	ENSMUST00000226297.2	Myh6 Links Ensembl NCBI MGI UniProt Show fit	myosin, heavy polypeptide 6, cardiac muscle, alpha
chr1_+_106866678 Show fit	0.07	ENSMUST00000112724.3	Serpinb12 Links Ensembl NCBI MGI UniProt Show fit	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12
chr5_+_92535705 Show fit	0.07	ENSMUST00000138687.2 ENSMUST00000124509.2	Art3 Links Ensembl NCBI MGI UniProt Show fit	ADP-ribosyltransferase 3
chr5_+_67125759 Show fit	0.07	ENSMUST00000238993.2 ENSMUST00000038188.14	Limch1 Links Ensembl NCBI MGI UniProt Show fit	LIM and calponin homology domains 1
chr10_+_20046748 Show fit	0.07	ENSMUST00000215924.2	Map7 Links Ensembl NCBI MGI UniProt Show fit	microtubule-associated protein 7
chr14_-_55204092 Show fit	0.06	ENSMUST00000081857.14	Myh6 Links Ensembl NCBI MGI UniProt Show fit	myosin, heavy polypeptide 6, cardiac muscle, alpha
chr4_-_149211145 Show fit	0.06	ENSMUST00000030815.3	Cort Links Ensembl NCBI MGI UniProt Show fit	cortistatin
chrX_+_135723420 Show fit	0.06	ENSMUST00000033800.13	Plp1 Links Ensembl NCBI MGI UniProt Show fit	proteolipid protein (myelin) 1
chr9_+_19533374 Show fit	0.05	ENSMUST00000213725.2 ENSMUST00000208694.2	Zfp317 Links Ensembl NCBI MGI UniProt Show fit	zinc finger protein 317
chr19_+_23881821 Show fit	0.05	ENSMUST00000237688.2	Apba1 Links Ensembl NCBI MGI UniProt Show fit	amyloid beta (A4) precursor protein binding, family A, member 1
chr12_+_29578354 Show fit	0.05	ENSMUST00000218583.2 ENSMUST00000049784.17	Myt1l Links Ensembl NCBI MGI UniProt Show fit	myelin transcription factor 1-like
chr4_-_119241024 Show fit	0.05	ENSMUST00000127149.8 ENSMUST00000152879.9 ENSMUST00000238673.2 ENSMUST00000238485.2	Ccdc30 Links Ensembl NCBI MGI UniProt Show fit	coiled-coil domain containing 30
chr6_+_88701810 Show fit	0.05	ENSMUST00000089449.5	Mgll Links Ensembl NCBI MGI UniProt Show fit	monoglyceride lipase
chr5_+_18167547 Show fit	0.05	ENSMUST00000030561.9	Gnat3 Links Ensembl NCBI MGI UniProt Show fit	guanine nucleotide binding protein, alpha transducing 3
chr4_-_119241002 Show fit	0.04	ENSMUST00000238721.2	Ccdc30 Links Ensembl NCBI MGI UniProt Show fit	coiled-coil domain containing 30
chrX_+_135723531 Show fit	0.04	ENSMUST00000113085.2	Plp1 Links Ensembl NCBI MGI UniProt Show fit	proteolipid protein (myelin) 1
chr1_+_179938904 Show fit	0.04	ENSMUST00000145181.2	Cdc42bpa Links Ensembl NCBI MGI UniProt Show fit	CDC42 binding protein kinase alpha
chr2_-_62404195 Show fit	0.03	ENSMUST00000174234.8 ENSMUST00000000402.16 ENSMUST00000174448.8 ENSMUST00000102732.10	Fap Links Ensembl NCBI MGI UniProt Show fit	fibroblast activation protein
chr1_+_17672117 Show fit	0.03	ENSMUST00000088476.4	Pi15 Links Ensembl NCBI MGI UniProt Show fit	peptidase inhibitor 15
chr7_-_29898236 Show fit	0.02	ENSMUST00000001845.13	Capns1 Links Ensembl NCBI MGI UniProt Show fit	calpain, small subunit 1
chr2_+_121991181 Show fit	0.02	ENSMUST00000036089.8	Trim69 Links Ensembl NCBI MGI UniProt Show fit	tripartite motif-containing 69
chr2_+_65451100 Show fit	0.02	ENSMUST00000144254.6 ENSMUST00000028377.14	Scn2a Links Ensembl NCBI MGI UniProt Show fit	sodium channel, voltage-gated, type II, alpha
chr5_-_31377847 Show fit	0.02	ENSMUST00000202294.4 ENSMUST00000031032.11	Ppm1g Links Ensembl NCBI MGI UniProt Show fit	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform
chr5_+_107656810 Show fit	0.01	ENSMUST00000160160.6	Gm42669 Links Ensembl NCBI MGI UniProt Show fit	predicted gene 42669
chr9_+_19533591 Show fit	0.01	ENSMUST00000215372.2	Zfp317 Links Ensembl NCBI MGI UniProt Show fit	zinc finger protein 317
chr6_-_14755249 Show fit	0.01	ENSMUST00000045096.6	Ppp1r3a Links Ensembl NCBI MGI UniProt Show fit	protein phosphatase 1, regulatory subunit 3A
chr4_-_119240885 Show fit	0.01	ENSMUST00000238422.2 ENSMUST00000238719.2 ENSMUST00000238723.2 ENSMUST00000044781.9 ENSMUST00000084307.5 ENSMUST00000148236.9 ENSMUST00000127474.3 ENSMUST00000238704.2	Ccdc30 Links Ensembl NCBI MGI UniProt Show fit	coiled-coil domain containing 30
chr5_+_20433169 Show fit	0.01	ENSMUST00000197553.5 ENSMUST00000208219.2	Magi2 Links Ensembl NCBI MGI UniProt Show fit	membrane associated guanylate kinase, WW and PDZ domain containing 2

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0061033	secretion by lung epithelial cell involved in lung growth(GO:0061033)
0.1	0.3	GO:0007522	visceral muscle development(GO:0007522)
0.1	0.2	GO:0001983	baroreceptor response to increased systemic arterial blood pressure(GO:0001983)
0.1	0.3	GO:0043152	induction of bacterial agglutination(GO:0043152)
0.1	0.3	GO:0006069	ethanol oxidation(GO:0006069)
0.1	0.2	GO:0035802	adrenal cortex development(GO:0035801) adrenal cortex formation(GO:0035802)
0.0	0.4	GO:0061713	neural crest cell migration involved in heart formation(GO:0003147) anterior neural tube closure(GO:0061713) cellular response to folic acid(GO:0071231)
0.0	0.3	GO:0006572	tyrosine catabolic process(GO:0006572)
0.0	0.1	GO:0006682	galactosylceramide biosynthetic process(GO:0006682) galactolipid biosynthetic process(GO:0019375)
0.0	0.2	GO:2000298	regulation of Rho-dependent protein serine/threonine kinase activity(GO:2000298)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.9	GO:0045098	type III intermediate filament(GO:0045098)
0.0	0.3	GO:0005577	fibrinogen complex(GO:0005577)
0.0	0.1	GO:0098890	extrinsic component of postsynaptic membrane(GO:0098890)
0.0	0.4	GO:0031362	anchored component of external side of plasma membrane(GO:0031362)
0.0	0.3	GO:0005859	muscle myosin complex(GO:0005859)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.9	GO:0004850	uridine phosphorylase activity(GO:0004850)
0.1	0.3	GO:0080130	L-phenylalanine:2-oxoglutarate aminotransferase activity(GO:0080130)
0.1	0.3	GO:0004024	alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.1	0.2	GO:0004937	alpha1-adrenergic receptor activity(GO:0004937)
0.1	0.4	GO:0005111	type 2 fibroblast growth factor receptor binding(GO:0005111)
0.0	0.3	GO:0030899	calcium-dependent ATPase activity(GO:0030899)
0.0	0.4	GO:0051870	methotrexate binding(GO:0051870)
0.0	0.1	GO:0047275	glucosaminylgalactosylglucosylceramide beta-galactosyltransferase activity(GO:0047275)
0.0	0.2	GO:0050693	LBD domain binding(GO:0050693)
0.0	0.1	GO:0001594	trace-amine receptor activity(GO:0001594)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.9	REACTOME PYRIMIDINE CATABOLISM	Genes involved in Pyrimidine catabolism
0.0	0.3	REACTOME ETHANOL OXIDATION	Genes involved in Ethanol oxidation
0.0	0.3	REACTOME COMMON PATHWAY	Genes involved in Common Pathway
0.0	0.6	REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS	Genes involved in Caspase-mediated cleavage of cytoskeletal proteins
0.0	0.4	REACTOME ACTIVATED POINT MUTANTS OF FGFR2	Genes involved in Activated point mutants of FGFR2