GSE58827: Dynamics of the Mouse Liver

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hoxa3 Links Ensembl NCBI MGI UniProt	ENSMUSG00000079560.14	homeobox A3

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Hoxa3	mm39_v1_chr6_-_52160816_52160837	0.23	1.8e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_+_172994841 Show fit	3.29	ENSMUST00000029017.6	Pck1 Links Ensembl NCBI MGI UniProt Show fit	phosphoenolpyruvate carboxykinase 1, cytosolic
chr19_-_7943365 Show fit	2.77	ENSMUST00000182102.8 ENSMUST00000075619.5	Slc22a27 Links Ensembl NCBI MGI UniProt Show fit	solute carrier family 22, member 27
chr6_-_136758716 Show fit	1.20	ENSMUST00000078095.11 ENSMUST00000032338.10	Gucy2c Links Ensembl NCBI MGI UniProt Show fit	guanylate cyclase 2c
chr9_+_118892497 Show fit	1.04	ENSMUST00000141185.8 ENSMUST00000126251.8 ENSMUST00000136561.2	Vill Links Ensembl NCBI MGI UniProt Show fit	villin-like
chr10_-_37014859 Show fit	0.86	ENSMUST00000092584.6	Marcks Links Ensembl NCBI MGI UniProt Show fit	myristoylated alanine rich protein kinase C substrate
chr5_+_90708962 Show fit	0.84	ENSMUST00000094615.8 ENSMUST00000200765.2	Albfm1 Links Ensembl NCBI MGI UniProt Show fit	albumin superfamily member 1
chr2_+_36120438 Show fit	0.84	ENSMUST00000062069.6	Ptgs1 Links Ensembl NCBI MGI UniProt Show fit	prostaglandin-endoperoxide synthase 1
chr6_-_129449739 Show fit	0.63	ENSMUST00000112076.9 ENSMUST00000184581.3	Clec7a Links Ensembl NCBI MGI UniProt Show fit	C-type lectin domain family 7, member a
chr3_+_159545309 Show fit	0.61	ENSMUST00000068952.10 ENSMUST00000198878.2	Wls Links Ensembl NCBI MGI UniProt Show fit	wntless WNT ligand secretion mediator
chr11_-_107228382 Show fit	0.50	ENSMUST00000040380.13	Pitpnc1 Links Ensembl NCBI MGI UniProt Show fit	phosphatidylinositol transfer protein, cytoplasmic 1
chr6_+_125529911 Show fit	0.46	ENSMUST00000112254.8 ENSMUST00000112253.6	Vwf Links Ensembl NCBI MGI UniProt Show fit	Von Willebrand factor
chr7_-_44753168 Show fit	0.44	ENSMUST00000211085.2 ENSMUST00000210642.2 ENSMUST00000003512.9	Fcgrt Links Ensembl NCBI MGI UniProt Show fit	Fc fragment of IgG receptor and transporter
chr2_-_27365633 Show fit	0.35	ENSMUST00000138693.8 ENSMUST00000113941.9 ENSMUST00000077737.13	Brd3 Links Ensembl NCBI MGI UniProt Show fit	bromodomain containing 3
chr14_+_79753055 Show fit	0.34	ENSMUST00000110835.3 ENSMUST00000227192.2	Elf1 Links Ensembl NCBI MGI UniProt Show fit	E74-like factor 1
chr12_+_59060162 Show fit	0.27	ENSMUST00000021379.8	Gemin2 Links Ensembl NCBI MGI UniProt Show fit	gem nuclear organelle associated protein 2
chr10_+_40225272 Show fit	0.26	ENSMUST00000044672.11 ENSMUST00000095743.4	Cdk19 Links Ensembl NCBI MGI UniProt Show fit	cyclin-dependent kinase 19
chr16_+_35861554 Show fit	0.16	ENSMUST00000042203.10	Wdr5b Links Ensembl NCBI MGI UniProt Show fit	WD repeat domain 5B
chr5_+_138185747 Show fit	0.14	ENSMUST00000110934.9	Cnpy4 Links Ensembl NCBI MGI UniProt Show fit	canopy FGF signaling regulator 4
chr17_-_71160477 Show fit	0.14	ENSMUST00000118283.8	Tgif1 Links Ensembl NCBI MGI UniProt Show fit	TGFB-induced factor homeobox 1
chr9_+_40092216 Show fit	0.10	ENSMUST00000218134.2 ENSMUST00000216720.2 ENSMUST00000214763.2	Olfr986 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 986
chr2_-_69542805 Show fit	0.10	ENSMUST00000102706.4 ENSMUST00000073152.13	Fastkd1 Links Ensembl NCBI MGI UniProt Show fit	FAST kinase domains 1
chr1_-_171854818 Show fit	0.09	ENSMUST00000138714.2 ENSMUST00000027837.13 ENSMUST00000111264.8	Vangl2 Links Ensembl NCBI MGI UniProt Show fit	VANGL planar cell polarity 2
chr15_+_65682066 Show fit	0.09	ENSMUST00000211878.2	Efr3a Links Ensembl NCBI MGI UniProt Show fit	EFR3 homolog A
chr2_-_168609110 Show fit	0.08	ENSMUST00000029061.12 ENSMUST00000103074.2	Sall4 Links Ensembl NCBI MGI UniProt Show fit	spalt like transcription factor 4
chr14_+_65612788 Show fit	0.08	ENSMUST00000224687.2	Zfp395 Links Ensembl NCBI MGI UniProt Show fit	zinc finger protein 395
chr2_-_86109346 Show fit	0.08	ENSMUST00000217294.2 ENSMUST00000217245.2 ENSMUST00000216432.2	Olfr1051 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 1051
chr4_-_43710231 Show fit	0.07	ENSMUST00000217544.2 ENSMUST00000107862.3	Olfr71 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 71
chr16_-_92196954 Show fit	0.07	ENSMUST00000023672.10	Rcan1 Links Ensembl NCBI MGI UniProt Show fit	regulator of calcineurin 1
chr3_+_55689921 Show fit	0.06	ENSMUST00000075422.6	Mab21l1 Links Ensembl NCBI MGI UniProt Show fit	mab-21-like 1
chr2_-_111843053 Show fit	0.04	ENSMUST00000213559.3	Olfr1310 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 1310
chr1_-_173018204 Show fit	0.02	ENSMUST00000215878.2 ENSMUST00000201132.3	Olfr1406 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 1406
chr7_-_115637970 Show fit	0.02	ENSMUST00000166877.8	Sox6 Links Ensembl NCBI MGI UniProt Show fit	SRY (sex determining region Y)-box 6
chr18_-_38336893 Show fit	0.02	ENSMUST00000194312.2	Pcdh1 Links Ensembl NCBI MGI UniProt Show fit	protocadherin 1
chr14_-_50586329 Show fit	0.01	ENSMUST00000216634.2	Olfr735 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 735
chr11_-_99265721 Show fit	0.01	ENSMUST00000006963.3	Krt28 Links Ensembl NCBI MGI UniProt Show fit	keratin 28

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.8	3.3	GO:0061402	glycerol biosynthetic process(GO:0006114) positive regulation of transcription from RNA polymerase II promoter in response to acidic pH(GO:0061402)
0.2	0.6	GO:0061357	positive regulation of Wnt protein secretion(GO:0061357)
0.2	2.8	GO:0015747	urate transport(GO:0015747)
0.1	0.8	GO:0019371	cyclooxygenase pathway(GO:0019371) maintenance of blood-brain barrier(GO:0035633)
0.0	0.1	GO:0060448	dichotomous subdivision of terminal units involved in lung branching(GO:0060448)
0.0	0.9	GO:0051764	actin crosslink formation(GO:0051764)
0.0	1.2	GO:0006182	cGMP biosynthetic process(GO:0006182)
0.0	1.0	GO:0051693	actin filament capping(GO:0051693)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.9	GO:0042585	germinal vesicle(GO:0042585)
0.0	1.2	GO:0008074	guanylate cyclase complex, soluble(GO:0008074)
0.0	0.5	GO:0033093	Weibel-Palade body(GO:0033093)
0.0	0.3	GO:0097504	Gemini of coiled bodies(GO:0097504)
0.0	0.1	GO:0060187	cell pole(GO:0060187)
0.0	0.6	GO:0032839	dendrite cytoplasm(GO:0032839)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.1	3.3	GO:0004611	phosphoenolpyruvate carboxykinase activity(GO:0004611) phosphoenolpyruvate carboxykinase (GTP) activity(GO:0004613)
0.2	2.8	GO:1901702	urate transmembrane transporter activity(GO:0015143) salt transmembrane transporter activity(GO:1901702)
0.1	1.2	GO:0015643	toxic substance binding(GO:0015643)
0.1	0.4	GO:0019770	IgG receptor activity(GO:0019770)
0.0	0.5	GO:0008526	phosphatidylinositol transporter activity(GO:0008526)
0.0	0.6	GO:0031852	mu-type opioid receptor binding(GO:0031852)
0.0	0.5	GO:0019865	immunoglobulin binding(GO:0019865)
0.0	0.8	GO:0004601	peroxidase activity(GO:0004601)
0.0	0.4	GO:0070577	lysine-acetylated histone binding(GO:0070577)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.3	PID HNF3B PATHWAY	FOXA2 and FOXA3 transcription factor networks

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	3.3	REACTOME ABACAVIR TRANSPORT AND METABOLISM	Genes involved in Abacavir transport and metabolism
0.1	0.9	REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE	Genes involved in Regulation of Insulin Secretion by Acetylcholine
0.0	0.5	REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN	Genes involved in Platelet Adhesion to exposed collagen
0.0	0.8	REACTOME PHASE1 FUNCTIONALIZATION OF COMPOUNDS	Genes involved in Phase 1 - Functionalization of compounds