GSE58827: Dynamics of the Mouse Liver

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Phox2a Links Ensembl NCBI MGI UniProt	ENSMUSG00000007946.12	paired-like homeobox 2a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Phox2a	mm39_v1_chr7_+_101467512_101467529	0.17	3.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr19_-_7943365 Show fit	0.95	ENSMUST00000182102.8 ENSMUST00000075619.5	Slc22a27 Links Ensembl NCBI MGI UniProt Show fit	solute carrier family 22, member 27
chr6_+_37847721 Show fit	0.30	ENSMUST00000031859.14 ENSMUST00000120428.8	Trim24 Links Ensembl NCBI MGI UniProt Show fit	tripartite motif-containing 24
chr11_-_99134885 Show fit	0.18	ENSMUST00000103132.10 ENSMUST00000038214.7	Krt222 Links Ensembl NCBI MGI UniProt Show fit	keratin 222
chr11_+_116734104 Show fit	0.16	ENSMUST00000106370.10	Mettl23 Links Ensembl NCBI MGI UniProt Show fit	methyltransferase like 23
chr9_+_118892497 Show fit	0.16	ENSMUST00000141185.8 ENSMUST00000126251.8 ENSMUST00000136561.2	Vill Links Ensembl NCBI MGI UniProt Show fit	villin-like
chrX_+_9751861 Show fit	0.13	ENSMUST00000067529.9 ENSMUST00000086165.4	Sytl5 Links Ensembl NCBI MGI UniProt Show fit	synaptotagmin-like 5
chr3_+_66127330 Show fit	0.10	ENSMUST00000029421.6	Ptx3 Links Ensembl NCBI MGI UniProt Show fit	pentraxin related gene
chr6_-_30936013 Show fit	0.10	ENSMUST00000101589.5	Klf14 Links Ensembl NCBI MGI UniProt Show fit	Kruppel-like factor 14
chr2_-_89855921 Show fit	0.10	ENSMUST00000216616.3	Olfr1264 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 1264
chr10_-_129965752 Show fit	0.09	ENSMUST00000215217.2 ENSMUST00000214192.2	Olfr824 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 824
chr5_+_13448647 Show fit	0.09	ENSMUST00000125629.8	Sema3a Links Ensembl NCBI MGI UniProt Show fit	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
chr10_+_29074950 Show fit	0.09	ENSMUST00000217011.2	Gm49353 Links Ensembl NCBI MGI UniProt Show fit	predicted gene, 49353
chr19_-_55229668 Show fit	0.08	ENSMUST00000069183.8	Gucy2g Links Ensembl NCBI MGI UniProt Show fit	guanylate cyclase 2g
chr5_+_13448833 Show fit	0.08	ENSMUST00000137798.10	Sema3a Links Ensembl NCBI MGI UniProt Show fit	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
chr5_-_34817412 Show fit	0.08	ENSMUST00000041364.13	Nop14 Links Ensembl NCBI MGI UniProt Show fit	NOP14 nucleolar protein
chr4_+_138606671 Show fit	0.08	ENSMUST00000105804.2	Pla2g2e Links Ensembl NCBI MGI UniProt Show fit	phospholipase A2, group IIE
chr2_+_36120438 Show fit	0.08	ENSMUST00000062069.6	Ptgs1 Links Ensembl NCBI MGI UniProt Show fit	prostaglandin-endoperoxide synthase 1
chr3_-_72875187 Show fit	0.07	ENSMUST00000167334.8	Sis Links Ensembl NCBI MGI UniProt Show fit	sucrase isomaltase (alpha-glucosidase)
chr11_-_99979052 Show fit	0.07	ENSMUST00000107419.2	Krt32 Links Ensembl NCBI MGI UniProt Show fit	keratin 32
chr1_-_154692678 Show fit	0.07	ENSMUST00000238369.2	Cacna1e Links Ensembl NCBI MGI UniProt Show fit	calcium channel, voltage-dependent, R type, alpha 1E subunit
chr19_+_12364643 Show fit	0.07	ENSMUST00000217062.3 ENSMUST00000216145.2 ENSMUST00000213657.2	Olfr1440 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 1440
chr12_+_30934320 Show fit	0.07	ENSMUST00000067087.7	Alkal2 Links Ensembl NCBI MGI UniProt Show fit	ALK and LTK ligand 2
chr16_-_29363671 Show fit	0.06	ENSMUST00000039090.9	Atp13a4 Links Ensembl NCBI MGI UniProt Show fit	ATPase type 13A4
chr13_-_78344492 Show fit	0.06	ENSMUST00000125176.3	Nr2f1 Links Ensembl NCBI MGI UniProt Show fit	nuclear receptor subfamily 2, group F, member 1
chr4_-_43710231 Show fit	0.06	ENSMUST00000217544.2 ENSMUST00000107862.3	Olfr71 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 71
chr13_-_22289994 Show fit	0.06	ENSMUST00000227357.2 ENSMUST00000228428.2	Vmn1r189 Links Ensembl NCBI MGI UniProt Show fit	vomeronasal 1 receptor 189
chr14_+_26722319 Show fit	0.06	ENSMUST00000035433.10	Hesx1 Links Ensembl NCBI MGI UniProt Show fit	homeobox gene expressed in ES cells
chr2_-_111820618 Show fit	0.06	ENSMUST00000216948.2 ENSMUST00000214935.2 ENSMUST00000217452.2 ENSMUST00000215045.2	Olfr1309 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 1309
chr5_-_118382926 Show fit	0.05	ENSMUST00000117177.8 ENSMUST00000133372.2 ENSMUST00000154786.8 ENSMUST00000121369.8	Rnft2 Links Ensembl NCBI MGI UniProt Show fit	ring finger protein, transmembrane 2
chr17_-_37430949 Show fit	0.05	ENSMUST00000214994.2 ENSMUST00000216341.2	Olfr92 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 92
chr19_-_47680528 Show fit	0.05	ENSMUST00000026045.14 ENSMUST00000086923.6	Col17a1 Links Ensembl NCBI MGI UniProt Show fit	collagen, type XVII, alpha 1
chr1_+_173983199 Show fit	0.04	ENSMUST00000213748.2	Olfr420 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 420
chr2_-_164427367 Show fit	0.04	ENSMUST00000109342.2	Wfdc6a Links Ensembl NCBI MGI UniProt Show fit	WAP four-disulfide core domain 6A
chr7_-_44752508 Show fit	0.04	ENSMUST00000209830.2	Fcgrt Links Ensembl NCBI MGI UniProt Show fit	Fc fragment of IgG receptor and transporter
chr16_-_56688024 Show fit	0.04	ENSMUST00000232373.2	Tmem45a Links Ensembl NCBI MGI UniProt Show fit	transmembrane protein 45a
chr4_+_134658209 Show fit	0.04	ENSMUST00000030622.3	Syf2 Links Ensembl NCBI MGI UniProt Show fit	SYF2 homolog, RNA splicing factor (S. cerevisiae)
chr3_+_93301003 Show fit	0.04	ENSMUST00000045912.3	Rptn Links Ensembl NCBI MGI UniProt Show fit	repetin
chr2_-_168607166 Show fit	0.03	ENSMUST00000137536.2	Sall4 Links Ensembl NCBI MGI UniProt Show fit	spalt like transcription factor 4
chr2_-_111843053 Show fit	0.03	ENSMUST00000213559.3	Olfr1310 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 1310
chr8_-_3675024 Show fit	0.03	ENSMUST00000133459.8	Pcp2 Links Ensembl NCBI MGI UniProt Show fit	Purkinje cell protein 2 (L7)
chr15_+_98350469 Show fit	0.03	ENSMUST00000217517.2	Olfr281 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 281
chr10_-_128885867 Show fit	0.03	ENSMUST00000216460.2	Olfr765 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 765
chr14_-_68771138 Show fit	0.03	ENSMUST00000022640.8	Adam7 Links Ensembl NCBI MGI UniProt Show fit	a disintegrin and metallopeptidase domain 7
chr6_-_41752111 Show fit	0.03	ENSMUST00000214976.3	Olfr459 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 459
chr1_+_173924457 Show fit	0.03	ENSMUST00000213832.2	Olfr427 Links Ensembl NCBI MGI UniProt Show fit	olfactory receptor 427
chr6_+_92793440 Show fit	0.03	ENSMUST00000057977.4	A730049H05Rik Links Ensembl NCBI MGI UniProt Show fit	RIKEN cDNA A730049H05 gene
chr19_-_45224251 Show fit	0.03	ENSMUST00000099401.6	Lbx1 Links Ensembl NCBI MGI UniProt Show fit	ladybird homeobox 1
chr2_-_27365633 Show fit	0.02	ENSMUST00000138693.8 ENSMUST00000113941.9 ENSMUST00000077737.13	Brd3 Links Ensembl NCBI MGI UniProt Show fit	bromodomain containing 3
chr4_-_14621497 Show fit	0.02	ENSMUST00000149633.2	Slc26a7 Links Ensembl NCBI MGI UniProt Show fit	solute carrier family 26, member 7
chr8_-_85389470 Show fit	0.02	ENSMUST00000060427.6	Ier2 Links Ensembl NCBI MGI UniProt Show fit	immediate early response 2
chr5_-_66672158 Show fit	0.02	ENSMUST00000161879.8 ENSMUST00000159357.8	Apbb2 Links Ensembl NCBI MGI UniProt Show fit	amyloid beta (A4) precursor protein-binding, family B, member 2
chr14_+_65612788 Show fit	0.02	ENSMUST00000224687.2	Zfp395 Links Ensembl NCBI MGI UniProt Show fit	zinc finger protein 395
chrX_+_159551171 Show fit	0.01	ENSMUST00000112368.3	Rs1 Links Ensembl NCBI MGI UniProt Show fit	retinoschisis (X-linked, juvenile) 1 (human)
chr4_-_14621805 Show fit	0.01	ENSMUST00000042221.14	Slc26a7 Links Ensembl NCBI MGI UniProt Show fit	solute carrier family 26, member 7
chr13_-_103042294 Show fit	0.01	ENSMUST00000167462.8	Mast4 Links Ensembl NCBI MGI UniProt Show fit	microtubule associated serine/threonine kinase family member 4
chr4_-_14621669 Show fit	0.00	ENSMUST00000143105.2	Slc26a7 Links Ensembl NCBI MGI UniProt Show fit	solute carrier family 26, member 7
chr6_-_147165623 Show fit	0.00	ENSMUST00000052296.9 ENSMUST00000204197.2	Pthlh Links Ensembl NCBI MGI UniProt Show fit	parathyroid hormone-like peptide
chrX_+_159551009 Show fit	0.00	ENSMUST00000033650.14	Rs1 Links Ensembl NCBI MGI UniProt Show fit	retinoschisis (X-linked, juvenile) 1 (human)

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.0	GO:0015747	urate transport(GO:0015747)
0.1	0.2	GO:1903045	neural crest cell migration involved in sympathetic nervous system development(GO:1903045)
0.0	0.3	GO:0070562	regulation of vitamin D receptor signaling pathway(GO:0070562)
0.0	0.1	GO:0052055	modulation by symbiont of host molecular function(GO:0052055) modulation of catalytic activity in other organism involved in symbiotic interaction(GO:0052203) modulation by host of symbiont catalytic activity(GO:0052422)
0.0	0.1	GO:0070376	regulation of ERK5 cascade(GO:0070376)
0.0	0.1	GO:0035633	cyclooxygenase pathway(GO:0019371) maintenance of blood-brain barrier(GO:0035633)
0.0	0.1	GO:0090520	sphingolipid mediated signaling pathway(GO:0090520)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0005726	perichromatin fibrils(GO:0005726)
0.0	0.1	GO:0030689	Noc complex(GO:0030689)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.0	GO:0015143	urate transmembrane transporter activity(GO:0015143) salt transmembrane transporter activity(GO:1901702)
0.0	0.3	GO:0034056	estrogen response element binding(GO:0034056)
0.0	0.1	GO:0030298	receptor signaling protein tyrosine kinase activator activity(GO:0030298)
0.0	0.1	GO:0004574	oligo-1,6-glucosidase activity(GO:0004574)
0.0	0.1	GO:0001849	complement component C1q binding(GO:0001849)