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PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish

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Results for foxg1a+foxg1c+foxg1d

Z-value: 0.62

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Transcription factors associated with foxg1a+foxg1c+foxg1d

Gene Symbol Gene ID Gene Info
foxg1c
ENSDARG00000068380 forkhead box G1c
foxg1d
ENSDARG00000070053 forkhead box G1d
foxg1a
ENSDARG00000070769 forkhead box G1a
foxg1c
ENSDARG00000114414 forkhead box G1c

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
foxg1cdr11_v1_chr18_-_40901707_40901707-0.372.0e-04Click!
foxg1adr11_v1_chr17_-_29119362_291193620.141.9e-01Click!
foxg1ddr11_v1_chr13_+_255067_2550670.047.3e-01Click!

Activity profile of foxg1a+foxg1c+foxg1d motif

Sorted Z-values of foxg1a+foxg1c+foxg1d motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr18_-_38087875 10.44 ENSDART00000111301
luzp2
leucine zipper protein 2
chr18_-_38088099 7.87 ENSDART00000146120
luzp2
leucine zipper protein 2
chr15_-_19250543 7.42 ENSDART00000092705
ENSDART00000138895
igsf9ba
immunoglobulin superfamily, member 9Ba
chr18_+_18104235 7.12 ENSDART00000145342
cbln1
cerebellin 1 precursor
chr17_-_15657029 6.94 ENSDART00000153925
fut9a
fucosyltransferase 9a
chr6_-_20952187 5.70 ENSDART00000074327
igfbp2a
insulin-like growth factor binding protein 2a
chr6_+_36942966 5.46 ENSDART00000028895
negr1
neuronal growth regulator 1
chr3_-_15264698 5.29 ENSDART00000111948
ENSDART00000142594
sez6l2
seizure related 6 homolog (mouse)-like 2
chr14_-_2361692 5.26 ENSDART00000167696
PCDHGC3 (1 of many)
si:ch73-233f7.4
chr14_-_30452218 4.40 ENSDART00000011480
zdhhc2
zinc finger, DHHC-type containing 2
chr3_+_23248704 3.80 ENSDART00000156032
ppp1r9ba
protein phosphatase 1, regulatory subunit 9Ba
chr20_+_38032143 3.77 ENSDART00000032161
galnt14
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)
chr11_+_13058613 3.50 ENSDART00000161532
zfyve9b
zinc finger, FYVE domain containing 9b
chr14_+_2095394 3.20 ENSDART00000186847
CT573264.2

chr9_+_38163876 3.11 ENSDART00000137955
clasp1a
cytoplasmic linker associated protein 1a
chr19_-_30904590 2.85 ENSDART00000137633
si:ch211-194e15.5
si:ch211-194e15.5
chr23_+_5977965 2.76 ENSDART00000115403
ENSDART00000183147
NAV1 (1 of many)
neuron navigator 1
chr16_-_13613475 2.45 ENSDART00000139102
dbpb
D site albumin promoter binding protein b
chr12_-_17897134 2.32 ENSDART00000066407
nptx2b
neuronal pentraxin IIb
chr24_+_29382109 2.31 ENSDART00000184620
ENSDART00000188414
ENSDART00000186132
ENSDART00000191489
ntng1a
netrin g1a
chr3_+_41726360 2.31 ENSDART00000154401
chst12a
carbohydrate (chondroitin 4) sulfotransferase 12a
chr22_-_38543630 2.23 ENSDART00000172029
si:ch211-126j24.1
si:ch211-126j24.1
chr5_-_21044693 2.18 ENSDART00000140298
si:dkey-13n15.2
si:dkey-13n15.2
chr15_-_30815826 2.15 ENSDART00000156160
ENSDART00000145918
msi2b
musashi RNA-binding protein 2b
chr4_-_8902406 2.13 ENSDART00000192962
mpped1
metallophosphoesterase domain containing 1
chr12_+_39685485 2.12 ENSDART00000163403
LO017650.1

chr4_+_3287819 2.05 ENSDART00000168633
CABZ01085700.1

chr18_-_44935174 2.01 ENSDART00000081025
pex16
peroxisomal biogenesis factor 16
chr7_+_47243564 1.96 ENSDART00000098942
ENSDART00000162237
znf507
zinc finger protein 507
chr5_-_38122126 1.93 ENSDART00000141791
ENSDART00000170528
si:ch211-284e13.6
si:ch211-284e13.6
chr17_-_31719071 1.93 ENSDART00000136199
dtd2
D-tyrosyl-tRNA deacylase 2
chr2_-_1486023 1.92 ENSDART00000113774
si:ch211-188c16.1
si:ch211-188c16.1
chr15_-_8763106 1.89 ENSDART00000154171
arhgap35a
Rho GTPase activating protein 35a
chr4_+_14343706 1.88 ENSDART00000142845
prl2
prolactin 2
chr11_-_42554290 1.85 ENSDART00000130573
atp6ap1la
ATPase H+ transporting accessory protein 1 like a
chr4_+_1283068 1.84 ENSDART00000167233
chrm2a
cholinergic receptor, muscarinic 2a
chr9_+_2002701 1.82 ENSDART00000082329
evx2
even-skipped homeobox 2
chr20_+_34320635 1.82 ENSDART00000153207
ivns1abpa
influenza virus NS1A binding protein a
chr19_-_19025998 1.80 ENSDART00000186156
ENSDART00000163359
ENSDART00000167951
dync1li1
dynein, cytoplasmic 1, light intermediate chain 1
chr3_+_23248542 1.79 ENSDART00000185765
ENSDART00000192332
ppp1r9ba
protein phosphatase 1, regulatory subunit 9Ba
chr25_-_26673570 1.73 ENSDART00000154917
ciartb
circadian associated repressor of transcription b
chr8_-_51599036 1.66 ENSDART00000175779
ENSDART00000134614
ENSDART00000098263
kctd9a
potassium channel tetramerization domain containing 9a
chr24_+_11106402 1.66 ENSDART00000146697
prlh2
prolactin releasing hormone 2
chr24_+_29381946 1.57 ENSDART00000189551
ntng1a
netrin g1a
chr7_+_9189547 1.48 ENSDART00000169783
pcsk6
proprotein convertase subtilisin/kexin type 6
chr15_-_23523222 1.42 ENSDART00000078396
hmbsb
hydroxymethylbilane synthase, b
chr1_-_46875493 1.41 ENSDART00000115081
agpat3
1-acylglycerol-3-phosphate O-acyltransferase 3
chr18_-_34170918 1.40 ENSDART00000015079
slc33a1
solute carrier family 33 (acetyl-CoA transporter), member 1
chr24_+_19591893 1.38 ENSDART00000152026
slco5a1a
solute carrier organic anion transporter family member 5A1a
chr8_+_19621511 1.16 ENSDART00000017128
slc35a3a
solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3a
chr18_-_34171280 1.16 ENSDART00000122321
slc33a1
solute carrier family 33 (acetyl-CoA transporter), member 1
chr20_-_14665002 1.12 ENSDART00000152816
scrn2
secernin 2
chr3_+_28860283 1.10 ENSDART00000077235
alg1
ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase
chr5_+_22791686 0.97 ENSDART00000014806
npas2
neuronal PAS domain protein 2
chr8_+_19621731 0.96 ENSDART00000144667
slc35a3a
solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3a
chr17_-_4252221 0.88 ENSDART00000152020
gdf3
growth differentiation factor 3
chr5_-_38121612 0.88 ENSDART00000159543
si:ch211-284e13.6
si:ch211-284e13.6
chr2_+_30721070 0.82 ENSDART00000099052
si:dkey-94e7.2
si:dkey-94e7.2
chr4_+_3980247 0.73 ENSDART00000049194
gpr37b
G protein-coupled receptor 37b
chr2_-_7246848 0.73 ENSDART00000146434
zgc:153115
zgc:153115
chr23_+_5470967 0.71 ENSDART00000110522
ENSDART00000149050
tulp1a
tubby like protein 1a
chr17_+_31719034 0.67 ENSDART00000077077
nubpl
nucleotide binding protein-like
chr7_-_51953613 0.64 ENSDART00000142042
cyp2x10.2
cytochrome P450, family 2, subfamily X, polypeptide 10.2
chr5_+_37720777 0.60 ENSDART00000076083
cdc42ep2
CDC42 effector protein (Rho GTPase binding) 2
chr14_+_26715626 0.51 ENSDART00000078557
polr2gl
polymerase (RNA) II (DNA directed) polypeptide G-like
chr23_-_15090782 0.48 ENSDART00000133624
si:ch211-218g4.2
si:ch211-218g4.2
chr15_-_16155729 0.45 ENSDART00000192212
si:ch211-259g3.4
si:ch211-259g3.4
chr3_+_35406998 0.37 ENSDART00000102994
rbbp6
retinoblastoma binding protein 6
chr15_-_23522653 0.34 ENSDART00000144685
hmbsb
hydroxymethylbilane synthase, b
chr25_-_35664817 0.32 ENSDART00000148718
lrrk2
leucine-rich repeat kinase 2
chr7_-_51953807 0.26 ENSDART00000174102
ENSDART00000145645
ENSDART00000052054
cyp2x10.2
cytochrome P450, family 2, subfamily X, polypeptide 10.2
chr12_-_43437927 0.24 ENSDART00000169949
ptprea
protein tyrosine phosphatase, receptor type, E, a
chr25_-_16742438 0.03 ENSDART00000156091
galnt8a.1
polypeptide N-acetylgalactosaminyltransferase 8a, tandem duplicate 1

Network of associatons between targets according to the STRING database.

First level regulatory network of foxg1a+foxg1c+foxg1d

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 5.7 GO:0040014 regulation of multicellular organism growth(GO:0040014)
0.5 1.8 GO:0010459 cardiac conduction system development(GO:0003161) negative regulation of heart rate(GO:0010459)
0.4 6.9 GO:0036065 fucosylation(GO:0036065)
0.4 4.4 GO:0016188 synaptic vesicle maturation(GO:0016188)
0.4 1.8 GO:0045448 regulation of mitotic cell cycle, embryonic(GO:0009794) mitotic cell cycle, embryonic(GO:0045448)
0.3 1.8 GO:0018160 peptidyl-pyrromethane cofactor linkage(GO:0018160)
0.2 0.9 GO:0038107 nodal signaling pathway involved in determination of left/right asymmetry(GO:0038107) regulation of nodal signaling pathway involved in determination of left/right asymmetry(GO:1900145)
0.2 1.8 GO:0060573 ventral spinal cord interneuron specification(GO:0021521) cell fate specification involved in pattern specification(GO:0060573)
0.1 2.2 GO:0090110 cargo loading into COPII-coated vesicle(GO:0090110)
0.1 2.1 GO:0015780 nucleotide-sugar transport(GO:0015780) pyrimidine nucleotide-sugar transport(GO:0015781) pyrimidine nucleotide-sugar transmembrane transport(GO:0090481)
0.1 3.9 GO:0070831 basement membrane assembly(GO:0070831)
0.1 1.7 GO:0021772 olfactory bulb development(GO:0021772) olfactory lobe development(GO:0021988)
0.1 1.5 GO:0016486 peptide hormone processing(GO:0016486)
0.1 2.3 GO:0048168 regulation of neuronal synaptic plasticity(GO:0048168)
0.1 0.3 GO:0060159 regulation of dopamine receptor signaling pathway(GO:0060159)
0.1 2.6 GO:0021955 central nervous system neuron axonogenesis(GO:0021955)
0.1 3.1 GO:1902850 mitotic spindle assembly(GO:0090307) microtubule cytoskeleton organization involved in mitosis(GO:1902850)
0.1 1.4 GO:0043252 sodium-independent organic anion transport(GO:0043252)
0.1 1.9 GO:1904894 positive regulation of JAK-STAT cascade(GO:0046427) positive regulation of STAT cascade(GO:1904894)
0.1 2.7 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.1 0.6 GO:0031274 pseudopodium organization(GO:0031268) pseudopodium assembly(GO:0031269) regulation of pseudopodium assembly(GO:0031272) positive regulation of pseudopodium assembly(GO:0031274)
0.1 5.6 GO:0019722 calcium-mediated signaling(GO:0019722)
0.0 2.0 GO:0007031 peroxisome organization(GO:0007031)
0.0 2.3 GO:0030166 proteoglycan biosynthetic process(GO:0030166)
0.0 1.9 GO:0050852 T cell receptor signaling pathway(GO:0050852)
0.0 0.7 GO:0032981 NADH dehydrogenase complex assembly(GO:0010257) mitochondrial respiratory chain complex I assembly(GO:0032981) mitochondrial respiratory chain complex I biogenesis(GO:0097031)
0.0 1.8 GO:0030641 regulation of cellular pH(GO:0030641)
0.0 0.9 GO:0042738 drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738)
0.0 3.5 GO:0001889 liver development(GO:0001889)
0.0 0.7 GO:0061512 protein localization to cilium(GO:0061512)
0.0 2.2 GO:0072659 protein localization to plasma membrane(GO:0072659) protein localization to cell periphery(GO:1990778)
0.0 3.7 GO:0043413 protein glycosylation(GO:0006486) macromolecule glycosylation(GO:0043413)
0.0 1.7 GO:0051260 protein homooligomerization(GO:0051260)
0.0 1.9 GO:0006399 tRNA metabolic process(GO:0006399)
0.0 0.7 GO:0007193 adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway(GO:0007193)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 3.1 GO:0005828 kinetochore microtubule(GO:0005828)
0.7 4.4 GO:0098837 postsynaptic recycling endosome(GO:0098837)
0.3 1.8 GO:0033181 plasma membrane proton-transporting V-type ATPase complex(GO:0033181)
0.2 1.0 GO:1990513 CLOCK-BMAL transcription complex(GO:1990513)
0.2 3.9 GO:0043256 basal lamina(GO:0005605) laminin complex(GO:0043256)
0.1 1.8 GO:0005868 cytoplasmic dynein complex(GO:0005868)
0.1 6.9 GO:0032580 Golgi cisterna membrane(GO:0032580)
0.1 2.2 GO:0030127 COPII vesicle coat(GO:0030127)
0.1 1.7 GO:0005844 polysome(GO:0005844)
0.0 2.0 GO:0005778 peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903)
0.0 0.3 GO:0070971 endoplasmic reticulum exit site(GO:0070971)
0.0 5.6 GO:0014069 postsynaptic density(GO:0014069)
0.0 2.1 GO:0031228 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0 2.0 GO:0000786 nucleosome(GO:0000786)
0.0 4.9 GO:0000139 Golgi membrane(GO:0000139)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 1.9 GO:0051500 D-aminoacyl-tRNA deacylase activity(GO:0051499) D-tyrosyl-tRNA(Tyr) deacylase activity(GO:0051500)
0.6 6.9 GO:0046920 alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.5 5.7 GO:0031995 insulin-like growth factor I binding(GO:0031994) insulin-like growth factor II binding(GO:0031995)
0.4 2.6 GO:0051185 coenzyme transporter activity(GO:0051185)
0.3 3.1 GO:0043515 kinetochore binding(GO:0043515)
0.3 1.8 GO:0004418 hydroxymethylbilane synthase activity(GO:0004418)
0.2 1.1 GO:0070004 cysteine-type exopeptidase activity(GO:0070004)
0.2 2.1 GO:0005459 UDP-galactose transmembrane transporter activity(GO:0005459)
0.2 1.8 GO:0016907 G-protein coupled acetylcholine receptor activity(GO:0016907)
0.2 5.6 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.1 3.9 GO:0098632 protein binding involved in cell-cell adhesion(GO:0098632)
0.1 1.4 GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841)
0.1 1.8 GO:0045504 dynein heavy chain binding(GO:0045504)
0.1 4.4 GO:0019706 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.1 1.4 GO:0015347 sodium-independent organic anion transmembrane transporter activity(GO:0015347)
0.0 2.2 GO:0044325 ion channel binding(GO:0044325)
0.0 1.1 GO:0000030 mannosyltransferase activity(GO:0000030)
0.0 2.3 GO:0008146 sulfotransferase activity(GO:0008146)
0.0 3.5 GO:0005179 hormone activity(GO:0005179)
0.0 5.5 GO:0042802 identical protein binding(GO:0042802)
0.0 0.9 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712)
0.0 0.7 GO:0051539 4 iron, 4 sulfur cluster binding(GO:0051539)
0.0 2.0 GO:0046982 protein heterodimerization activity(GO:0046982)
0.0 2.6 GO:0030246 carbohydrate binding(GO:0030246)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.0 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.0 6.8 NABA SECRETED FACTORS Genes encoding secreted soluble factors

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.5 REACTOME SIGNALING BY NODAL Genes involved in Signaling by NODAL
0.1 2.6 REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES Genes involved in Transport of vitamins, nucleosides, and related molecules
0.1 3.8 REACTOME O LINKED GLYCOSYLATION OF MUCINS Genes involved in O-linked glycosylation of mucins
0.1 1.4 REACTOME SYNTHESIS OF PA Genes involved in Synthesis of PA
0.0 1.0 REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA Genes involved in Circadian Repression of Expression by REV-ERBA
0.0 1.1 REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein