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PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish

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Results for phox2ba

Z-value: 0.46

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Transcription factors associated with phox2ba

Gene Symbol Gene ID Gene Info
phox2ba
ENSDARG00000075330 paired like homeobox 2Ba

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
phox2badr11_v1_chr1_-_19079957_190799570.084.7e-01Click!

Activity profile of phox2ba motif

Sorted Z-values of phox2ba motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr5_-_44829719 6.00 ENSDART00000019104
fbp2
fructose-1,6-bisphosphatase 2
chr4_-_77551860 4.85 ENSDART00000188176
AL935186.6

chr24_-_27436319 4.64 ENSDART00000171489
si:dkey-25o1.7
si:dkey-25o1.7
chr2_+_55982940 4.50 ENSDART00000097753
ENSDART00000097751
nmrk2
nicotinamide riboside kinase 2
chr1_+_58205904 3.88 ENSDART00000147324
si:dkey-222h21.12
si:dkey-222h21.12
chr1_-_33380011 3.70 ENSDART00000141347
ENSDART00000136383
cd99
CD99 molecule
chr8_-_36370552 3.60 ENSDART00000097932
ENSDART00000148323
si:busm1-104n07.3
si:busm1-104n07.3
chr4_+_7841627 3.13 ENSDART00000037997
ucmaa
upper zone of growth plate and cartilage matrix associated a
chr15_-_35960250 3.10 ENSDART00000186765
col4a4
collagen, type IV, alpha 4
chr4_-_4834617 2.82 ENSDART00000141539
coa6
cytochrome c oxidase assembly factor 6
chr9_-_21067971 2.52 ENSDART00000004333
tbx15
T-box 15
chr4_+_76509294 2.41 ENSDART00000099899
ms4a17a.17
membrane-spanning 4-domains, subfamily A, member 17A.17
chr24_+_19542323 2.12 ENSDART00000140379
ENSDART00000142830
sulf1
sulfatase 1
chr4_-_4834347 2.04 ENSDART00000141803
coa6
cytochrome c oxidase assembly factor 6
chr18_+_27000850 1.93 ENSDART00000188906
ENSDART00000086131
pik3c2a
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
chr14_+_45702521 1.77 ENSDART00000112470
ccdc88b
coiled-coil domain containing 88B
chr3_+_6469754 1.73 ENSDART00000185809
NUP85 (1 of many)
nucleoporin 85
chr17_+_45395846 1.71 ENSDART00000058793
nenf
neudesin neurotrophic factor
chr23_-_14830627 1.69 ENSDART00000134659
sla2
Src-like-adaptor 2
chr6_+_11850359 1.68 ENSDART00000109552
ENSDART00000188139
ENSDART00000181499
ENSDART00000178269
baz2ba
bromodomain adjacent to zinc finger domain, 2Ba
chr19_-_32600638 1.66 ENSDART00000143497
zgc:91944
zgc:91944
chr16_+_7662609 1.63 ENSDART00000184895
ENSDART00000149404
ENSDART00000081418
ENSDART00000081422
bves
blood vessel epicardial substance
chr16_+_1471 1.56 ENSDART00000181972
CABZ01090785.1

chr13_-_34862452 1.55 ENSDART00000134573
ENSDART00000047552
sptlc3
serine palmitoyltransferase, long chain base subunit 3
chr18_+_27001115 1.46 ENSDART00000133547
pik3c2a
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
chr5_-_44286987 1.31 ENSDART00000184112
si:ch73-337l15.2
si:ch73-337l15.2
chr24_-_26484298 1.26 ENSDART00000140647
eif5a
eukaryotic translation initiation factor 5A
chr17_+_30587333 1.25 ENSDART00000156500
nhsl1a
NHS-like 1a
chr17_+_21919131 1.24 ENSDART00000048136
htra1a
HtrA serine peptidase 1a
chr1_+_57774454 1.22 ENSDART00000152507
si:dkey-1c7.2
si:dkey-1c7.2
chr9_-_54304684 1.21 ENSDART00000109512
il13
interleukin 13
chr10_+_26646104 1.18 ENSDART00000187685
adgrg4b
adhesion G protein-coupled receptor G4b
chr10_+_26645953 1.17 ENSDART00000131482
adgrg4b
adhesion G protein-coupled receptor G4b
chr18_+_27598755 1.15 ENSDART00000193808
cd82b
CD82 molecule b
chr8_-_38355268 1.12 ENSDART00000129597
sorbs3
sorbin and SH3 domain containing 3
chr20_+_4060839 1.06 ENSDART00000178565
TRIM67
tripartite motif containing 67
chr14_+_32839535 1.04 ENSDART00000168975
arr3b
arrestin 3b, retinal (X-arrestin)
chr22_-_15671525 0.84 ENSDART00000080286
si:ch1073-396h14.1
si:ch1073-396h14.1
chr6_-_16493516 0.80 ENSDART00000022499
psmb3
proteasome subunit beta 3
chr21_+_27189490 0.78 ENSDART00000125349
bada
BCL2 associated agonist of cell death a
chr19_+_4800068 0.75 ENSDART00000020686
st3gal1l
ST3 beta-galactoside alpha-2,3-sialyltransferase 1, like
chr6_-_11800427 0.65 ENSDART00000126243
march7
membrane-associated ring finger (C3HC4) 7
chr5_-_44286778 0.64 ENSDART00000146080
si:ch73-337l15.2
si:ch73-337l15.2
chr18_-_5111449 0.60 ENSDART00000046902
pdcd10a
programmed cell death 10a
chr15_+_2500510 0.58 ENSDART00000180329
wdr53
WD repeat domain 53
chr1_+_33390286 0.58 ENSDART00000139004
dhrsx
dehydrogenase/reductase (SDR family) X-linked
chr1_+_10074601 0.54 ENSDART00000168473
si:ch73-132f6.5
si:ch73-132f6.5
chr21_+_18910502 0.48 ENSDART00000147567
smpd4
sphingomyelin phosphodiesterase 4
chr16_+_47428721 0.48 ENSDART00000180597
ENSDART00000032309
slc25a32b
solute carrier family 25 (mitochondrial folate carrier), member 32b
chr13_+_42858228 0.42 ENSDART00000179763
cdh23
cadherin-related 23
chr7_+_72460911 0.40 ENSDART00000160682
ENSDART00000168532
HECTD4
HECT domain E3 ubiquitin protein ligase 4
chr15_+_25681044 0.39 ENSDART00000077853
hic1
hypermethylated in cancer 1
chr5_-_38161033 0.31 ENSDART00000145907
gucy2d
guanylate cyclase 2D, retinal
chr7_+_8543317 0.31 ENSDART00000114998
jac8
jacalin 8
chr12_+_32368574 0.29 ENSDART00000086389
ANKFN1
si:ch211-277e21.2
chr13_-_12021566 0.27 ENSDART00000125430
pprc1
peroxisome proliferator-activated receptor gamma, coactivator-related 1
chr9_+_22634073 0.27 ENSDART00000181822
etv5a
ets variant 5a
chr23_+_37090889 0.27 ENSDART00000074406
ubxn10
UBX domain protein 10
chr13_+_47623916 0.26 ENSDART00000109266
mertka
c-mer proto-oncogene tyrosine kinase a
chr3_+_23247325 0.24 ENSDART00000114190
ppp1r9ba
protein phosphatase 1, regulatory subunit 9Ba
chr8_+_10862353 0.23 ENSDART00000140717
brpf3b
bromodomain and PHD finger containing, 3b
chr17_+_33719415 0.22 ENSDART00000132294
fut8a
fucosyltransferase 8a (alpha (1,6) fucosyltransferase)
chr19_-_32600138 0.21 ENSDART00000052101
zgc:91944
zgc:91944
chr15_-_23908605 0.21 ENSDART00000185578
usp32
ubiquitin specific peptidase 32
chr2_-_38282079 0.20 ENSDART00000145808
rnf212b
si:ch211-10e2.1
chr20_-_38801981 0.18 ENSDART00000125333
cad
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
chr19_+_10799929 0.16 ENSDART00000159152
lipea
lipase, hormone-sensitive a
chr7_-_41746427 0.16 ENSDART00000174232
arl8
ADP-ribosylation factor-like 8
chr13_-_42560662 0.12 ENSDART00000124898
CR792417.1

chr1_+_10074343 0.09 ENSDART00000190194
si:ch73-132f6.5
si:ch73-132f6.5
chr2_-_51223658 0.07 ENSDART00000171770
pigrl4.2
polymeric immunoglobulin receptor-like 4.2
chr2_-_26590628 0.06 ENSDART00000025120
ndc1
NDC1 transmembrane nucleoporin
chr14_-_45702721 0.05 ENSDART00000165727
si:dkey-226n24.1
si:dkey-226n24.1
chr15_+_36310442 0.04 ENSDART00000154678
gmnc
geminin coiled-coil domain containing
chr6_-_9630081 0.01 ENSDART00000013066
ercc3
excision repair cross-complementation group 3
chr16_+_53387085 0.00 ENSDART00000154223
ENSDART00000101404
kif13a
kinesin family member 13A

Network of associatons between targets according to the STRING database.

First level regulatory network of phox2ba

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
2.0 6.0 GO:0005985 sucrose metabolic process(GO:0005985) sucrose biosynthetic process(GO:0005986) disaccharide biosynthetic process(GO:0046351)
0.7 3.7 GO:2000389 neutrophil extravasation(GO:0072672) regulation of neutrophil extravasation(GO:2000389) positive regulation of neutrophil extravasation(GO:2000391)
0.5 3.9 GO:0031179 peptide modification(GO:0031179)
0.3 1.6 GO:0050891 multicellular organismal water homeostasis(GO:0050891)
0.3 2.1 GO:2000290 smoothened signaling pathway involved in ventral spinal cord patterning(GO:0021910) regulation of myotome development(GO:2000290)
0.2 4.9 GO:0008535 respiratory chain complex IV assembly(GO:0008535)
0.2 3.1 GO:0045667 regulation of osteoblast differentiation(GO:0045667)
0.2 0.6 GO:1903358 regulation of Golgi organization(GO:1903358)
0.2 1.3 GO:0045901 positive regulation of translational elongation(GO:0045901) positive regulation of translational termination(GO:0045905)
0.2 3.4 GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process(GO:0036092)
0.1 1.6 GO:0034312 diol biosynthetic process(GO:0034312) sphingosine biosynthetic process(GO:0046512)
0.1 4.6 GO:0048247 lymphocyte chemotaxis(GO:0048247)
0.1 1.0 GO:0002031 G-protein coupled receptor internalization(GO:0002031)
0.1 0.4 GO:0035678 neuromast hair cell morphogenesis(GO:0035678)
0.1 3.1 GO:0030199 collagen fibril organization(GO:0030199)
0.1 0.2 GO:0021563 glossopharyngeal nerve development(GO:0021563)
0.0 0.5 GO:0006685 sphingomyelin catabolic process(GO:0006685)
0.0 0.2 GO:1903292 protein localization to Golgi membrane(GO:1903292)
0.0 1.2 GO:0071219 cellular response to molecule of bacterial origin(GO:0071219) cellular response to lipopolysaccharide(GO:0071222)
0.0 0.8 GO:0006509 membrane protein ectodomain proteolysis(GO:0006509)
0.0 1.8 GO:0031122 cytoplasmic microtubule organization(GO:0031122)
0.0 0.8 GO:0010499 proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.0 0.3 GO:0060217 hemangioblast cell differentiation(GO:0060217)
0.0 1.2 GO:0040036 regulation of fibroblast growth factor receptor signaling pathway(GO:0040036)
0.0 0.2 GO:0044154 histone H3-K14 acetylation(GO:0044154)
0.0 2.5 GO:0001708 cell fate specification(GO:0001708)
0.0 0.2 GO:0036065 fucosylation(GO:0036065)
0.0 0.3 GO:0007168 receptor guanylyl cyclase signaling pathway(GO:0007168)
0.0 2.3 GO:0007189 adenylate cyclase-activating G-protein coupled receptor signaling pathway(GO:0007189)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0090443 FAR/SIN/STRIPAK complex(GO:0090443)
0.2 1.6 GO:0031211 serine C-palmitoyltransferase complex(GO:0017059) endoplasmic reticulum palmitoyltransferase complex(GO:0031211)
0.1 1.6 GO:0016328 lateral plasma membrane(GO:0016328)
0.0 2.3 GO:0005942 phosphatidylinositol 3-kinase complex(GO:0005942)
0.0 3.1 GO:0005581 collagen trimer(GO:0005581)
0.0 0.8 GO:0005839 proteasome core complex(GO:0005839)
0.0 2.3 GO:0005795 Golgi stack(GO:0005795)
0.0 1.3 GO:0005643 nuclear pore(GO:0005643)
0.0 0.4 GO:0032420 stereocilium(GO:0032420)
0.0 0.3 GO:0030992 intraciliary transport particle B(GO:0030992)
0.0 0.2 GO:0070775 H3 histone acetyltransferase complex(GO:0070775) MOZ/MORF histone acetyltransferase complex(GO:0070776)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.0 6.0 GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)
0.6 4.5 GO:0050262 ribosylnicotinamide kinase activity(GO:0050262)
0.4 3.9 GO:0036374 peptidyltransferase activity(GO:0000048) glutathione hydrolase activity(GO:0036374)
0.2 1.6 GO:0004758 serine C-palmitoyltransferase activity(GO:0004758) C-palmitoyltransferase activity(GO:0016454)
0.2 3.4 GO:0035005 1-phosphatidylinositol-4-phosphate 3-kinase activity(GO:0035005)
0.2 1.9 GO:0003691 double-stranded telomeric DNA binding(GO:0003691)
0.2 0.5 GO:0008517 folic acid transporter activity(GO:0008517)
0.1 2.1 GO:0008449 N-acetylglucosamine-6-sulfatase activity(GO:0008449)
0.1 4.6 GO:0048020 CCR chemokine receptor binding(GO:0048020)
0.1 1.6 GO:0030552 cAMP binding(GO:0030552)
0.1 0.7 GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity(GO:0003836)
0.1 0.2 GO:0016743 carboxyl- or carbamoyltransferase activity(GO:0016743)
0.0 1.8 GO:0051959 dynein light intermediate chain binding(GO:0051959)
0.0 1.2 GO:0005520 insulin-like growth factor binding(GO:0005520)
0.0 0.8 GO:0004298 threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003)
0.0 0.5 GO:0004767 sphingomyelin phosphodiesterase activity(GO:0004767)
0.0 1.3 GO:0003746 translation elongation factor activity(GO:0003746)
0.0 3.1 GO:0005201 extracellular matrix structural constituent(GO:0005201)
0.0 0.2 GO:0033878 hormone-sensitive lipase activity(GO:0033878)
0.0 0.3 GO:0004383 guanylate cyclase activity(GO:0004383)
0.0 0.2 GO:0043994 H3 histone acetyltransferase activity(GO:0010484) histone acetyltransferase activity (H3-K23 specific)(GO:0043994)
0.0 0.2 GO:0008417 fucosyltransferase activity(GO:0008417)
0.0 0.2 GO:0019789 SUMO transferase activity(GO:0019789)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.2 ST IL 13 PATHWAY Interleukin 13 (IL-13) Pathway
0.1 6.5 PID AVB3 INTEGRIN PATHWAY Integrins in angiogenesis
0.0 1.7 PID TCR PATHWAY TCR signaling in naïve CD4+ T cells
0.0 0.3 PID CONE PATHWAY Visual signal transduction: Cones
0.0 2.1 NABA ECM REGULATORS Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 3.4 REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE Genes involved in Synthesis of PIPs at the late endosome membrane
0.2 6.0 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.1 3.1 REACTOME NCAM1 INTERACTIONS Genes involved in NCAM1 interactions
0.1 1.1 REACTOME SMOOTH MUSCLE CONTRACTION Genes involved in Smooth Muscle Contraction
0.0 1.3 REACTOME PTM GAMMA CARBOXYLATION HYPUSINE FORMATION AND ARYLSULFATASE ACTIVATION Genes involved in PTM: gamma carboxylation, hypusine formation and arylsulfatase activation
0.0 0.8 REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES Genes involved in Cross-presentation of soluble exogenous antigens (endosomes)
0.0 0.5 REACTOME GLYCOSPHINGOLIPID METABOLISM Genes involved in Glycosphingolipid metabolism