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PRJNA195909:zebrafish embryo and larva development

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Results for creb3l1

Z-value: 0.88

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Transcription factors associated with creb3l1

Gene Symbol Gene ID Gene Info
creb3l1
ENSDARG00000015793 cAMP responsive element binding protein 3-like 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
creb3l1dr11_v1_chr7_+_38898208_38898208-0.916.7e-04Click!

Activity profile of creb3l1 motif

Sorted Z-values of creb3l1 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr21_-_43636595 1.97 ENSDART00000151115
ENSDART00000151486
ENSDART00000151778
si:ch1073-263o8.2
si:ch1073-263o8.2
chr12_+_30789611 1.60 ENSDART00000181501
aldh18a1
aldehyde dehydrogenase 18 family, member A1
chr9_+_45428041 1.55 ENSDART00000193087
adarb1b
adenosine deaminase, RNA-specific, B1b
chr17_+_10090638 1.54 ENSDART00000169522
ENSDART00000160156
sec23a
Sec23 homolog A, COPII coat complex component
chr19_+_33139164 1.38 ENSDART00000043039
fam84b
family with sequence similarity 84, member B
chr4_-_26095755 1.26 ENSDART00000100611
ENSDART00000191266
si:ch211-244b2.3
si:ch211-244b2.3
chr18_+_2153530 1.25 ENSDART00000158255
pygo1
pygopus family PHD finger 1
chr12_-_35582683 1.21 ENSDART00000167933
sec24c
SEC24 homolog C, COPII coat complex component
chr21_+_10701834 1.16 ENSDART00000192473
lman1
lectin, mannose-binding, 1
chr18_-_7481036 1.16 ENSDART00000101292
si:dkey-238c7.16
si:dkey-238c7.16
chr4_+_68562464 1.14 ENSDART00000192954
BX548011.4

chr21_+_10702031 1.11 ENSDART00000102304
lman1
lectin, mannose-binding, 1
chr6_-_50685862 1.11 ENSDART00000134146
mtss1
metastasis suppressor 1
chr12_-_35582521 1.09 ENSDART00000162175
ENSDART00000168958
sec24c
SEC24 homolog C, COPII coat complex component
chr18_-_7031409 1.09 ENSDART00000148485
ENSDART00000005405
calub
calumenin b
chr5_-_48680580 1.08 ENSDART00000031194
lysmd3
LysM, putative peptidoglycan-binding, domain containing 3
chr9_+_34230067 1.04 ENSDART00000139157
nxpe3
neurexophilin and PC-esterase domain family, member 3
chr9_+_20554178 1.02 ENSDART00000183911
ENSDART00000147435
man1a2
mannosidase, alpha, class 1A, member 2
chr1_+_54124209 0.98 ENSDART00000187730
LO017722.1

chr20_+_22799857 0.95 ENSDART00000058527
scfd2
sec1 family domain containing 2
chr9_+_20554896 0.91 ENSDART00000144248
man1a2
mannosidase, alpha, class 1A, member 2
chr10_+_15603082 0.82 ENSDART00000024450
zfand5b
zinc finger, AN1-type domain 5b
chr5_-_28968964 0.81 ENSDART00000184936
ENSDART00000016628
fam129bb
family with sequence similarity 129, member Bb
chr14_+_28281744 0.81 ENSDART00000173292
mid2
midline 2
chr12_+_13348918 0.80 ENSDART00000181373
rnasen
ribonuclease type III, nuclear
chr22_-_21897203 0.76 ENSDART00000158501
ENSDART00000105566
ENSDART00000136795
gna11a
guanine nucleotide binding protein (G protein), alpha 11a (Gq class)
chr11_-_36957127 0.74 ENSDART00000168528
cacna1da
calcium channel, voltage-dependent, L type, alpha 1D subunit, a
chr8_+_47219107 0.71 ENSDART00000146018
ENSDART00000075068
mthfr
methylenetetrahydrofolate reductase (NAD(P)H)
chr3_+_32862730 0.69 ENSDART00000144939
ENSDART00000125126
ENSDART00000144531
ENSDART00000141717
ENSDART00000137599
zgc:162613
zgc:162613
chr3_-_26183699 0.66 ENSDART00000147517
ENSDART00000140731
si:ch211-11k18.4
si:ch211-11k18.4
chr1_-_18592068 0.64 ENSDART00000082063
fam114a1
family with sequence similarity 114, member A1
chr7_+_13491452 0.63 ENSDART00000053535
arih1l
ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 like
chr23_-_306796 0.63 ENSDART00000143125
anks1aa
ankyrin repeat and sterile alpha motif domain containing 1Aa
chr3_-_26184018 0.62 ENSDART00000191604
si:ch211-11k18.4
si:ch211-11k18.4
chr15_-_18115540 0.61 ENSDART00000131639
ENSDART00000047902
arcn1b
archain 1b
chr5_+_61556172 0.60 ENSDART00000131937
orai2
ORAI calcium release-activated calcium modulator 2
chr14_-_45595711 0.59 ENSDART00000074038
scyl1
SCY1-like, kinase-like 1
chr15_+_32249062 0.58 ENSDART00000133867
ENSDART00000152545
ENSDART00000082315
ENSDART00000152513
ENSDART00000152139
arfip2a
ADP-ribosylation factor interacting protein 2a
chr20_+_22799641 0.57 ENSDART00000131132
scfd2
sec1 family domain containing 2
chr7_+_30988570 0.57 ENSDART00000180613
ENSDART00000185625
tjp1a
tight junction protein 1a
chr19_+_7549854 0.54 ENSDART00000138866
ENSDART00000151758
pbxip1a
pre-B-cell leukemia homeobox interacting protein 1a
chr22_+_24157807 0.54 ENSDART00000159165
b3galt2
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
chr2_-_36819624 0.49 ENSDART00000140844
slitrk3b
SLIT and NTRK-like family, member 3b
chr20_-_1191910 0.49 ENSDART00000043218
ube2j1
ubiquitin-conjugating enzyme E2, J1
chr16_+_5612547 0.45 ENSDART00000140226
ENSDART00000189352
CYTH2
si:dkey-283b15.4
chr23_-_25798099 0.43 ENSDART00000041833
fitm2
fat storage-inducing transmembrane protein 2
chr4_-_5795309 0.40 ENSDART00000039987
pgm3
phosphoglucomutase 3
chr6_-_59388625 0.40 ENSDART00000111992
ppp1r16b
protein phosphatase 1, regulatory subunit 16B
chr17_-_11417551 0.39 ENSDART00000128291
arid4a
AT rich interactive domain 4A (RBP1-like)
chr6_-_9236309 0.39 ENSDART00000160397
ENSDART00000164603
iqcb1
IQ motif containing B1
chr11_-_2456656 0.38 ENSDART00000171219
ENSDART00000167938
slc2a10
solute carrier family 2 (facilitated glucose transporter), member 10
chr6_-_13716744 0.35 ENSDART00000111102
chpfb
chondroitin polymerizing factor b
chr9_+_19529951 0.33 ENSDART00000125416
pknox1.1
pbx/knotted 1 homeobox 1.1
chr14_-_45464112 0.33 ENSDART00000173209
ehd1a
EH-domain containing 1a
chr19_+_20708460 0.30 ENSDART00000034124
rab5aa
RAB5A, member RAS oncogene family, a
chr24_+_854877 0.30 ENSDART00000188408
piezo2a.2
piezo-type mechanosensitive ion channel component 2a, tandem duplicate 2
chr17_+_30448452 0.28 ENSDART00000153939
lpin1
lipin 1
chr16_+_19637384 0.28 ENSDART00000184773
ENSDART00000191895
ENSDART00000182020
ENSDART00000135359
macc1
metastasis associated in colon cancer 1
chr5_-_30516646 0.25 ENSDART00000014666
arcn1a
archain 1a
chr21_+_5932140 0.22 ENSDART00000193767
rexo4
REX4 homolog, 3'-5' exonuclease
chr18_-_18587745 0.20 ENSDART00000191973
sf3b3
splicing factor 3b, subunit 3
chr22_-_775776 0.18 ENSDART00000149749
rbbp5
retinoblastoma binding protein 5
chr5_+_58996765 0.17 ENSDART00000062175
derl2
derlin 2
chr14_-_26411918 0.17 ENSDART00000020582
tmed9
transmembrane p24 trafficking protein 9
chr22_+_31295791 0.16 ENSDART00000092447
grip2b
glutamate receptor interacting protein 2b
chr14_+_8594367 0.16 ENSDART00000037749
stx5a
syntaxin 5A
chr18_-_3542435 0.16 ENSDART00000184017
dcun1d5
DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
chr1_+_277731 0.15 ENSDART00000133431
cenpe
centromere protein E
chr18_+_13792490 0.14 ENSDART00000136754
cdh13
cadherin 13, H-cadherin (heart)
chr13_-_40499296 0.12 ENSDART00000158338
CNNM1
Danio rerio cyclin and CBS domain divalent metal cation transport mediator 1 (cnnm1), mRNA.
chr9_-_29497916 0.11 ENSDART00000060246
dnajc3a
DnaJ (Hsp40) homolog, subfamily C, member 3a
chr13_-_9875538 0.11 ENSDART00000041609
tm9sf3
transmembrane 9 superfamily member 3
chr4_-_2637689 0.10 ENSDART00000192550
ENSDART00000021953
ENSDART00000150344
cog5
component of oligomeric golgi complex 5
chr18_+_7553950 0.05 ENSDART00000193420
ENSDART00000062143
zgc:77650
zgc:77650
chr4_-_17812131 0.04 ENSDART00000025731
spic
Spi-C transcription factor (Spi-1/PU.1 related)
chr10_-_3427589 0.03 ENSDART00000133452
ENSDART00000037183
tmed2
transmembrane p24 trafficking protein 2
chr25_-_8513255 0.03 ENSDART00000150129
polg
polymerase (DNA directed), gamma
chr2_+_5948534 0.01 ENSDART00000124324
ENSDART00000176461
slc1a7a
solute carrier family 1 (glutamate transporter), member 7a
chr7_+_18100996 0.00 ENSDART00000055810
rab1ba
zRAB1B, member RAS oncogene family a

Network of associatons between targets according to the STRING database.

First level regulatory network of creb3l1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 3.8 GO:0090110 cargo loading into COPII-coated vesicle(GO:0090110)
0.2 0.9 GO:0051645 Golgi localization(GO:0051645)
0.2 0.6 GO:1901187 regulation of ephrin receptor signaling pathway(GO:1901187)
0.2 1.6 GO:0006561 proline biosynthetic process(GO:0006561) L-proline biosynthetic process(GO:0055129)
0.1 1.2 GO:1905066 regulation of canonical Wnt signaling pathway involved in heart development(GO:1905066)
0.1 1.6 GO:0006382 adenosine to inosine editing(GO:0006382)
0.1 0.3 GO:0048169 regulation of long-term neuronal synaptic plasticity(GO:0048169)
0.1 1.9 GO:0006491 N-glycan processing(GO:0006491)
0.1 0.5 GO:1905097 regulation of guanyl-nucleotide exchange factor activity(GO:1905097) regulation of Rho guanyl-nucleotide exchange factor activity(GO:2001106)
0.1 0.4 GO:0034389 lipid particle organization(GO:0034389)
0.1 0.2 GO:0048200 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.1 0.6 GO:0036060 filtration diaphragm assembly(GO:0036058) slit diaphragm assembly(GO:0036060)
0.0 0.3 GO:0071260 cellular response to mechanical stimulus(GO:0071260)
0.0 0.3 GO:0031061 negative regulation of histone methylation(GO:0031061)
0.0 0.7 GO:0009086 methionine biosynthetic process(GO:0009086) tetrahydrofolate interconversion(GO:0035999)
0.0 0.7 GO:0050910 detection of mechanical stimulus involved in sensory perception of sound(GO:0050910)
0.0 2.3 GO:0007029 endoplasmic reticulum organization(GO:0007029)
0.0 0.4 GO:0036372 opsin transport(GO:0036372)
0.0 0.2 GO:0000738 DNA catabolic process, exonucleolytic(GO:0000738)
0.0 0.5 GO:0030309 poly-N-acetyllactosamine metabolic process(GO:0030309) poly-N-acetyllactosamine biosynthetic process(GO:0030311)
0.0 0.8 GO:0060158 phospholipase C-activating dopamine receptor signaling pathway(GO:0060158)
0.0 0.6 GO:0002115 store-operated calcium entry(GO:0002115)
0.0 1.5 GO:0006904 vesicle docking involved in exocytosis(GO:0006904)
0.0 0.4 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.0 0.6 GO:0034315 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315)
0.0 0.4 GO:0030206 chondroitin sulfate biosynthetic process(GO:0030206)
0.0 0.4 GO:0061028 establishment of endothelial barrier(GO:0061028)
0.0 0.1 GO:0034975 protein folding in endoplasmic reticulum(GO:0034975)
0.0 0.1 GO:1902262 apoptotic process involved in patterning of blood vessels(GO:1902262)
0.0 0.2 GO:0099638 neurotransmitter receptor transport, endosome to postsynaptic membrane(GO:0098887) endosome to plasma membrane protein transport(GO:0099638) neurotransmitter receptor transport, endosome to plasma membrane(GO:0099639)
0.0 0.6 GO:1901800 positive regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032436) positive regulation of proteasomal protein catabolic process(GO:1901800)
0.0 0.2 GO:0045116 protein neddylation(GO:0045116)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 3.8 GO:0030127 COPII vesicle coat(GO:0030127)
0.1 0.8 GO:0033018 sarcoplasmic reticulum lumen(GO:0033018)
0.1 0.9 GO:0030126 COPI vesicle coat(GO:0030126)
0.1 0.3 GO:0098842 postsynaptic early endosome(GO:0098842)
0.0 2.1 GO:0030134 ER to Golgi transport vesicle(GO:0030134)
0.0 0.7 GO:0009925 basal plasma membrane(GO:0009925)
0.0 0.2 GO:0000839 Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.0 0.2 GO:0071005 U2-type precatalytic spliceosome(GO:0071005)
0.0 0.4 GO:0032588 trans-Golgi network membrane(GO:0032588)
0.0 0.8 GO:0005834 heterotrimeric G-protein complex(GO:0005834)
0.0 0.3 GO:0055038 recycling endosome membrane(GO:0055038)
0.0 0.2 GO:0048188 Set1C/COMPASS complex(GO:0048188)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.6 GO:0016774 phosphotransferase activity, carboxyl group as acceptor(GO:0016774)
0.2 1.9 GO:0015924 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity(GO:0004571) mannosyl-oligosaccharide mannosidase activity(GO:0015924)
0.2 2.3 GO:0005537 mannose binding(GO:0005537)
0.1 1.6 GO:0003726 double-stranded RNA adenosine deaminase activity(GO:0003726)
0.1 0.4 GO:0017020 myosin phosphatase regulator activity(GO:0017020)
0.1 0.8 GO:0031826 type 2A serotonin receptor binding(GO:0031826)
0.1 0.4 GO:0019992 diacylglycerol binding(GO:0019992)
0.1 0.2 GO:1990381 ubiquitin-specific protease binding(GO:1990381)
0.0 0.2 GO:0030620 U2 snRNA binding(GO:0030620)
0.0 0.4 GO:0047238 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity(GO:0047238)
0.0 0.5 GO:0008532 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity(GO:0008532)
0.0 0.4 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.0 0.6 GO:0046875 ephrin receptor binding(GO:0046875)
0.0 0.6 GO:0015279 store-operated calcium channel activity(GO:0015279)
0.0 0.7 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.0 0.7 GO:0008331 high voltage-gated calcium channel activity(GO:0008331)
0.0 4.0 GO:0000149 SNARE binding(GO:0000149)
0.0 0.8 GO:0031624 ubiquitin conjugating enzyme binding(GO:0031624)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 2.3 PID TCPTP PATHWAY Signaling events mediated by TCPTP
0.0 1.1 PID HEDGEHOG GLI PATHWAY Hedgehog signaling events mediated by Gli proteins
0.0 0.4 PID ARF6 PATHWAY Arf6 signaling events
0.0 1.2 WNT SIGNALING Genes related to Wnt-mediated signal transduction

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 3.8 REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC
0.2 1.6 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.1 4.2 REACTOME TRANSPORT TO THE GOLGI AND SUBSEQUENT MODIFICATION Genes involved in Transport to the Golgi and subsequent modification
0.1 0.4 REACTOME FACILITATIVE NA INDEPENDENT GLUCOSE TRANSPORTERS Genes involved in Facilitative Na+-independent glucose transporters
0.0 0.4 REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS Genes involved in Synthesis of substrates in N-glycan biosythesis
0.0 0.3 REACTOME SYNTHESIS OF PE Genes involved in Synthesis of PE
0.0 0.7 REACTOME METABOLISM OF VITAMINS AND COFACTORS Genes involved in Metabolism of vitamins and cofactors