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PRJNA195909:zebrafish embryo and larva development

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Results for hoxd9a

Z-value: 0.38

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Transcription factors associated with hoxd9a

Gene Symbol Gene ID Gene Info
ENSDARG00000059274 homeobox D9a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxd9adr11_v1_chr9_-_1965727_1965727-0.029.6e-01Click!

Activity profile of hoxd9a motif

Sorted Z-values of hoxd9a motif

Promoter Log-likelihood Transcript Gene Gene Info
chr25_+_418932 0.16 ENSDART00000059193
protogenin homolog b (Gallus gallus)
chr2_+_11685742 0.13 ENSDART00000138562
growth regulation by estrogen in breast cancer-like
chr22_+_37888249 0.12 ENSDART00000076082
fetuin B
chr18_-_36066087 0.12 ENSDART00000059352
ENSDART00000145177
exosome component 5
chr3_-_55121125 0.10 ENSDART00000125092
hemoglobin, alpha embryonic 1
chr7_-_8374950 0.10 ENSDART00000057101
aerolysin-like protein
chr20_-_43741159 0.10 ENSDART00000192621
si:dkeyp-50f7.2
chr21_+_39963851 0.10 ENSDART00000144435
solute carrier family 47 (multidrug and toxin extrusion), member 1
chr2_-_57837838 0.10 ENSDART00000010699
splicing factor 3a, subunit 2
chr2_+_4402765 0.10 ENSDART00000159525
BMP and activin membrane-bound inhibitor homolog (Xenopus laevis) b
chr16_+_1383914 0.10 ENSDART00000185089
ceramide synthase 2b
chr13_-_37620091 0.09 ENSDART00000135875
ENSDART00000193270
ENSDART00000018064
zgc:152791
chr5_+_43006422 0.09 ENSDART00000009182
aquaporin 3a
chr16_+_13883872 0.09 ENSDART00000101304
ENSDART00000136005
ATG12 autophagy related 12 homolog (S. cerevisiae)
chr22_-_24880824 0.09 ENSDART00000061165
vitellogenin 2
chr16_+_23913943 0.09 ENSDART00000175404
ENSDART00000129525
apolipoprotein A-IV b, tandem duplicate 1
chr22_-_26945493 0.08 ENSDART00000077411
chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1)
chr20_-_8094718 0.08 ENSDART00000122902
si:ch211-232i5.3
chr3_-_32817274 0.08 ENSDART00000142582
myosin light chain, phosphorylatable, fast skeletal muscle a
chr13_-_28674422 0.08 ENSDART00000122754
ENSDART00000057574
5'-nucleotidase, cytosolic IIa
chr25_+_31276842 0.08 ENSDART00000187238
troponin I type 2a (skeletal, fast), tandem duplicate 4
chr1_+_38362412 0.08 ENSDART00000075086
centrosomal protein 44
chr3_+_15805917 0.08 ENSDART00000055834
phosphatase, orphan 1
chr13_+_48359573 0.08 ENSDART00000161959
ENSDART00000165311
mutS homolog 6 (E. coli)
chr19_+_10855158 0.07 ENSDART00000172219
ENSDART00000170826
apolipoprotein Ea
chr6_-_53426773 0.07 ENSDART00000162791
macrophage stimulating 1
chr12_-_990149 0.07 ENSDART00000054367
KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2b
chr13_-_36535128 0.07 ENSDART00000043312
serine/arginine-rich splicing factor 5a
chr6_+_21684296 0.07 ENSDART00000057223
Ras homolog, mTORC1 binding like 1
chr21_+_39941875 0.07 ENSDART00000190414
solute carrier family 47 (multidrug and toxin extrusion), member 1
chr23_-_23401305 0.07 ENSDART00000078936
hairy-related 9
chr8_+_22359881 0.07 ENSDART00000187867
zgc:153631
chr12_+_1000323 0.07 ENSDART00000054363
si:ch1073-272o11.3
chr16_-_47427016 0.07 ENSDART00000074575
septin 7b
chr14_-_35462148 0.07 ENSDART00000045809
sushi-repeat containing protein, X-linked 2
chr22_+_15959844 0.07 ENSDART00000182201
scl/tal1 interrupting locus
chr17_-_14876758 0.06 ENSDART00000155857
nidogen 2a (osteonidogen)
chr15_-_14212777 0.06 ENSDART00000165572

chr2_-_33993533 0.06 ENSDART00000140910
ENSDART00000077304
patched 2
chr24_+_41690545 0.06 ENSDART00000160069
laminin, alpha 1
chr21_+_39941184 0.06 ENSDART00000133604
solute carrier family 47 (multidrug and toxin extrusion), member 1
chr5_-_46329880 0.06 ENSDART00000156577
si:ch211-130m23.5
chr23_+_7379728 0.06 ENSDART00000012194
GATA binding protein 5
chr21_+_39941559 0.06 ENSDART00000189718
ENSDART00000160875
ENSDART00000135235
solute carrier family 47 (multidrug and toxin extrusion), member 1
chr12_+_9499742 0.06 ENSDART00000044150
ENSDART00000136354
DnaJ (Hsp40) homolog, subfamily C, member 9
chr16_+_54209504 0.06 ENSDART00000020033
X-ray repair complementing defective repair in Chinese hamster cells 1
chr9_+_48219111 0.06 ENSDART00000111225
ENSDART00000145972
coiled-coil domain containing 173
chr18_+_33580391 0.06 ENSDART00000189300
si:dkey-47k20.4
chr5_-_1963498 0.06 ENSDART00000073462
ribosomal protein, large, P0
chr9_-_303658 0.06 ENSDART00000160338
si:ch211-166e11.5
chr14_-_7141550 0.06 ENSDART00000172020
tRNA phosphotransferase 1
chr24_-_38083378 0.06 ENSDART00000056381
C-reactive protein 2
chr19_+_7835025 0.05 ENSDART00000026276
CDC28 protein kinase regulatory subunit 1B
chr2_+_30739680 0.05 ENSDART00000101861
transcription elongation factor A (SII), 1
chr16_-_7443388 0.05 ENSDART00000017445
PR domain containing 1a, with ZNF domain
chr6_+_43400059 0.05 ENSDART00000143374
microphthalmia-associated transcription factor a
chr22_+_5752257 0.05 ENSDART00000143052
COX14 cytochrome c oxidase assembly factor
chr3_-_31115996 0.05 ENSDART00000058955
ADP-ribosylation factor-like 6 interacting protein 1
chr1_-_338445 0.05 ENSDART00000010092
growth arrest-specific 6
chr17_-_1174960 0.05 ENSDART00000161202
DnaJ (Hsp40) homolog, subfamily C, member 17
chr22_-_22301929 0.05 ENSDART00000142027
chromatin assembly factor 1, subunit A (p150)
chr20_+_26538137 0.05 ENSDART00000045397
syntaxin 11b, tandem duplicate 1
chr15_+_47440477 0.05 ENSDART00000002384
paired-like homeobox 2a
chr14_+_46342882 0.05 ENSDART00000193707
ENSDART00000060577
transmembrane protein 33
chr12_+_13164706 0.05 ENSDART00000112565
progestin and adipoQ receptor family member IVb
chr21_+_21357309 0.05 ENSDART00000079634
ENSDART00000146102
potassium channel, subfamily K, member 12 like
chr20_+_36806398 0.05 ENSDART00000153317
ABRA C-terminal like
chr8_+_20393250 0.05 ENSDART00000015038
zeta chain of T cell receptor associated protein kinase 70
chr3_-_39695856 0.04 ENSDART00000148247
B9 protein domain 1
chr5_-_31897139 0.04 ENSDART00000191957
coronin, actin binding protein, 1Cb
chr22_+_15960005 0.04 ENSDART00000033617
scl/tal1 interrupting locus
chr20_-_35076387 0.04 ENSDART00000019196
lefty1
chr2_+_10878406 0.04 ENSDART00000091497
transcription elongation factor A (SII) N-terminal and central domain containing 2
chr12_+_19199735 0.04 ENSDART00000066393
pdgfa associated protein 1a
chr6_-_8377055 0.04 ENSDART00000131513
interleukin enhancer binding factor 3a
chr5_-_12093618 0.04 ENSDART00000161542
leucine rich repeat containing 74B
chr5_+_23083555 0.04 ENSDART00000159562
zinc finger, DHHC-type containing 15a
chr23_+_9035578 0.04 ENSDART00000140455
cerebral cavernous malformation 2-like
chr12_+_24952902 0.04 ENSDART00000189086
ENSDART00000014868
calmodulin 3a (phosphorylase kinase, delta)
chr13_+_39236141 0.04 ENSDART00000111458
zgc:172136
chr6_+_41191482 0.04 ENSDART00000000877
opsin 1 (cone pigments), medium-wave-sensitive, 3
chr21_+_3166519 0.04 ENSDART00000160585
heterogeneous nuclear ribonucleoprotein A/Bb
chr4_+_71401321 0.04 ENSDART00000158076
si:ch211-76m11.7
chr15_-_34322915 0.04 ENSDART00000190543
ENSDART00000019651
ENSDART00000193601
diacylglycerol kinase, beta
chr18_+_9810642 0.04 ENSDART00000143965
si:dkey-266j7.2
chr15_-_1844048 0.04 ENSDART00000102410
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor
chr19_-_37508571 0.04 ENSDART00000018255
interleukin enhancer binding factor 2
chr22_-_10165446 0.04 ENSDART00000142012
RanBP-type and C3HC4-type zinc finger containing 1
chr10_+_23537576 0.04 ENSDART00000130515

chr3_+_22442445 0.04 ENSDART00000190921
WNK lysine deficient protein kinase 4b
chr4_+_14899720 0.04 ENSDART00000187456
aldo-keto reductase family 1, member B1 (aldose reductase)
chr3_+_13848226 0.04 ENSDART00000184342
interleukin enhancer binding factor 3b
chr1_-_22851481 0.04 ENSDART00000054386
quinoid dihydropteridine reductase b1
chr7_-_26306546 0.04 ENSDART00000140817
zgc:77439
chr13_-_41155472 0.04 ENSDART00000160588
si:dkeyp-86d6.2
chr16_-_47426482 0.04 ENSDART00000148631
ENSDART00000149723
septin 7b
chr3_-_9444749 0.04 ENSDART00000182191

chr15_+_846768 0.04 ENSDART00000155633
ENSDART00000191235
si:dkey-7i4.5
si:dkey-77f5.8
chr3_+_46425262 0.04 ENSDART00000153690
sc:d0202
chr4_+_14900042 0.03 ENSDART00000018261
aldo-keto reductase family 1, member B1 (aldose reductase)
chr2_-_10877765 0.03 ENSDART00000100607
cell division cycle 7 homolog (S. cerevisiae)
chr10_-_24868581 0.03 ENSDART00000193055

chr11_+_24815927 0.03 ENSDART00000146838
RAB interacting factor
chr22_+_20710434 0.03 ENSDART00000135521
PEAK family member 3
chr14_+_45406299 0.03 ENSDART00000173142
ENSDART00000112377
microtubule-associated protein 1 light chain 3 gamma, like
chr21_+_43172506 0.03 ENSDART00000121725
zinc finger, CCHC domain containing 10
chr19_+_6914095 0.03 ENSDART00000104906
si:ch73-367f21.4
chr18_-_3542435 0.03 ENSDART00000184017
DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
chr11_+_45388126 0.03 ENSDART00000167826
ENSDART00000171274
serine/arginine-rich splicing factor 11
chr16_-_42461263 0.03 ENSDART00000109259
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a
chr25_-_4192637 0.03 ENSDART00000153832
protein phosphatase 1, regulatory subunit 32
chr24_-_3477103 0.03 ENSDART00000143723
isopentenyl-diphosphate delta isomerase 1
chr6_-_34938678 0.03 ENSDART00000186689
ENSDART00000131610
SERPINE1 mRNA binding protein 1a
chr2_-_48196092 0.03 ENSDART00000139944
secondary ossification center associated regulator of chondrocyte maturation
chr8_+_21133307 0.03 ENSDART00000056405
mago homolog, exon junction complex core component
chr2_+_19195841 0.03 ENSDART00000163137
ENSDART00000161095
ELOVL fatty acid elongase 1a
chr3_-_31115601 0.03 ENSDART00000139090
ADP-ribosylation factor-like 6 interacting protein 1
chr22_-_392224 0.03 ENSDART00000124720

chr7_-_24046999 0.03 ENSDART00000144616
ENSDART00000124653
ENSDART00000127813
dehydrogenase/reductase (SDR family) member 4
chr11_+_37201483 0.03 ENSDART00000160930
ENSDART00000173439
ENSDART00000171273
zgc:112265
chr22_+_2403068 0.03 ENSDART00000132925
ENSDART00000132569
zgc:112977
chr3_-_49382896 0.03 ENSDART00000169115
si:ch73-167f10.1
chr9_-_12269847 0.03 ENSDART00000136558
ENSDART00000144734
ENSDART00000131766
ENSDART00000032344
nucleoporin 35
chr9_+_21259820 0.03 ENSDART00000137024
ENSDART00000132324
spindle and kinetochore associated complex subunit 3
chr10_-_40557210 0.03 ENSDART00000135297
trace amine associated receptor 18b
chr5_-_61787969 0.03 ENSDART00000112744
growth arrest specific 2 like 2
chr9_+_2333550 0.03 ENSDART00000016417
ATP synthase membrane subunit c locus 3a
chr14_+_26224731 0.03 ENSDART00000168673
GM2 ganglioside activator
chr6_-_58764672 0.03 ENSDART00000154322
sterol O-acyltransferase 2
chr15_+_37589698 0.03 ENSDART00000076066
ENSDART00000153894
ENSDART00000156298
lin-37 DREAM MuvB core complex component
chr23_+_4483083 0.03 ENSDART00000092389
nucleoporin 210
chr1_-_69444 0.03 ENSDART00000166954
si:zfos-1011f11.1
chr21_+_45717930 0.03 ENSDART00000164315
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
chr23_+_36460239 0.03 ENSDART00000172441
LIM domain and actin binding 1a
chr23_-_36446307 0.03 ENSDART00000136623
zgc:174906
chr8_-_36327328 0.03 ENSDART00000183333
zgc:103700
chr12_+_30723778 0.03 ENSDART00000153291
solute carrier family 35, member F3a
chr20_+_1996202 0.03 ENSDART00000184143

chr14_+_30795559 0.03 ENSDART00000006132
cofilin 1
chr2_+_25124498 0.03 ENSDART00000056801
male-specific lethal 2 homolog a (Drosophila)
chr4_-_73739119 0.03 ENSDART00000108669
zgc:171551
chr4_-_1776352 0.03 ENSDART00000123089
DnaJ (Hsp40) homolog, subfamily C, member 2
chr19_+_7810028 0.03 ENSDART00000081592
ENSDART00000140719
aquaporin 10b
chr19_-_42291355 0.03 ENSDART00000150919
ENSDART00000151034
si:ch211-191i18.2
chr6_-_7776612 0.03 ENSDART00000190269
myosin, heavy chain 9a, non-muscle
chr4_+_28473223 0.03 ENSDART00000150438
si:ch73-289h5.4
chr17_-_13007484 0.03 ENSDART00000156812
si:dkeyp-33b5.4
chr21_-_25213616 0.03 ENSDART00000122513
replication factor C (activator 1) 2
chr8_-_13064330 0.03 ENSDART00000129168
si:dkey-208b23.5
chr22_+_6084771 0.03 ENSDART00000009590
si:dkey-19a16.16
chr22_-_11661724 0.03 ENSDART00000025198
methyltransferase like 21A
chr3_+_39579393 0.03 ENSDART00000055170
ceroid-lipofuscinosis, neuronal 3
chr20_+_11731039 0.03 ENSDART00000152215
ENSDART00000152585
si:ch211-155o21.3
chr8_+_471342 0.03 ENSDART00000167205
nudix (nucleoside diphosphate linked moiety X)-type motif 12
chr8_-_13029297 0.03 ENSDART00000144305
DENN/MADD domain containing 2Da
chr16_+_26706519 0.03 ENSDART00000142706
vir like m6A methyltransferase associated
chr5_-_23179319 0.03 ENSDART00000161883
ENSDART00000136260
si:dkey-114c15.5
chr15_-_32383340 0.03 ENSDART00000185632
complement component 4
chr22_-_11714104 0.03 ENSDART00000145265
ENSDART00000063127
ENSDART00000183743
crystallin, gamma S1
chr21_-_11646878 0.03 ENSDART00000162426
ENSDART00000135937
ENSDART00000131448
ENSDART00000148097
ENSDART00000133443
calpastatin
chr10_+_11355841 0.03 ENSDART00000193067
ENSDART00000064215
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)
chr23_-_7052362 0.03 ENSDART00000127702
ENSDART00000192468
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)
chr8_-_36287046 0.03 ENSDART00000162877
si:busm1-194e12.11
chr6_-_52675630 0.03 ENSDART00000083830
syndecan 4
chr6_-_8392104 0.03 ENSDART00000081561
ENSDART00000181178
interleukin enhancer binding factor 3a
chr14_-_7137808 0.02 ENSDART00000054803
tRNA phosphotransferase 1
chr5_+_28830643 0.02 ENSDART00000051448
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
chr8_+_15251448 0.02 ENSDART00000063717
zgc:171480
chr15_-_3956906 0.02 ENSDART00000171202
clarin 1
chr22_+_31059919 0.02 ENSDART00000077063
SEC13 homolog, nuclear pore and COPII coat complex component
chr13_+_2523032 0.02 ENSDART00000172261
luteinizing hormone, beta polypeptide
chr10_-_36808348 0.02 ENSDART00000099320
dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 1
chr11_-_42106310 0.02 ENSDART00000164635
si:ch211-193l2.10
chr1_-_10647307 0.02 ENSDART00000103548
si:dkey-31e10.1
chr5_+_57480014 0.02 ENSDART00000135520
si:ch211-202f5.3
chr9_+_52398531 0.02 ENSDART00000126215
death associated protein 1b
chr14_+_32430982 0.02 ENSDART00000017179
ENSDART00000123382
ENSDART00000075593
coagulation factor IXa
chr1_+_41898919 0.02 ENSDART00000140845
si:dkey-37g12.1
chr7_-_1148539 0.02 ENSDART00000173447
si:dkey-31g16.2
chr12_+_2428247 0.02 ENSDART00000152529
leucine rich repeat containing 18b
chr13_+_2894536 0.02 ENSDART00000183678

chr5_-_23805387 0.02 ENSDART00000133805
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 4
chr20_+_34792166 0.02 ENSDART00000061523
interleukin 17a/f3
chr8_+_7315625 0.02 ENSDART00000135655
ENSDART00000181048
selenoprotein H
chr20_+_42978499 0.02 ENSDART00000138793
si:ch211-203k16.3
chr19_+_10558535 0.02 ENSDART00000141292
upstream transcription factor 2, c-fos interacting
chr10_+_38708099 0.02 ENSDART00000172306
transmembrane protease, serine 2
chr18_-_20532339 0.02 ENSDART00000060291
immunoglobulin mu binding protein 2
chr9_+_54679221 0.02 ENSDART00000167769
EGF-like-domain, multiple 6
chr25_+_20715950 0.02 ENSDART00000180223
ERGIC and golgi 2
chr20_+_53368611 0.02 ENSDART00000060432
cell division cycle 40 homolog (S. cerevisiae)
chr16_-_16761164 0.02 ENSDART00000135872
si:dkey-27n14.1
chr11_-_3366782 0.02 ENSDART00000127982
sulfite oxidase
chr25_+_25438322 0.02 ENSDART00000150364
si:ch211-103e16.5
chr16_-_31505802 0.02 ENSDART00000147616
si:ch211-251p5.5
chr22_+_18188045 0.02 ENSDART00000140106
myocyte enhancer factor 2b
chr20_+_1196386 0.02 ENSDART00000041192
LYR motif containing 2
chr18_-_27897217 0.02 ENSDART00000175259
IQ motif containing G
chr2_-_4868002 0.02 ENSDART00000189835
transferrin receptor 1a
chr10_+_24684799 0.02 ENSDART00000113696
thrombospondin, type I, domain containing 1

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxd9a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0002566 somatic diversification of immune receptors via somatic mutation(GO:0002566) somatic hypermutation of immunoglobulin genes(GO:0016446)
0.0 0.1 GO:0021730 trigeminal sensory nucleus development(GO:0021730)
0.0 0.1 GO:0071051 polyadenylation-dependent snoRNA 3'-end processing(GO:0071051)
0.0 0.1 GO:1900221 regulation of nitric-oxide synthase activity(GO:0050999) positive regulation of nitric-oxide synthase activity(GO:0051000) beta-amyloid clearance(GO:0097242) regulation of beta-amyloid clearance(GO:1900221)
0.0 0.1 GO:0050764 regulation of phagocytosis(GO:0050764)
0.0 0.1 GO:0048618 post-embryonic foregut morphogenesis(GO:0048618)
0.0 0.1 GO:0071539 protein localization to centrosome(GO:0071539)
0.0 0.1 GO:0000012 single strand break repair(GO:0000012)
0.0 0.1 GO:0006501 C-terminal protein lipidation(GO:0006501)
0.0 0.1 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.1 GO:0045198 establishment of epithelial cell apical/basal polarity(GO:0045198)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0032301 MutSalpha complex(GO:0032301)
0.0 0.1 GO:0034363 intermediate-density lipoprotein particle(GO:0034363)
0.0 0.1 GO:0005784 Sec61 translocon complex(GO:0005784)
0.0 0.1 GO:0000177 nuclear exosome (RNase complex)(GO:0000176) cytoplasmic exosome (RNase complex)(GO:0000177)
0.0 0.0 GO:0033186 CAF-1 complex(GO:0033186)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0048030 disaccharide binding(GO:0048030)
0.0 0.1 GO:0032357 guanine/thymine mispair binding(GO:0032137) single base insertion or deletion binding(GO:0032138) single thymine insertion binding(GO:0032143) oxidized DNA binding(GO:0032356) oxidized purine DNA binding(GO:0032357) mismatch repair complex binding(GO:0032404) MutLalpha complex binding(GO:0032405)
0.0 0.1 GO:0046923 ER retention sequence binding(GO:0046923)
0.0 0.1 GO:0015105 arsenite transmembrane transporter activity(GO:0015105)
0.0 0.1 GO:0070891 lipoteichoic acid binding(GO:0070891)
0.0 0.1 GO:0008158 hedgehog receptor activity(GO:0008158)
0.0 0.3 GO:0042910 xenobiotic transporter activity(GO:0042910)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS Genes involved in Bile salt and organic anion SLC transporters
0.0 0.0 REACTOME TRANSLOCATION OF ZAP 70 TO IMMUNOLOGICAL SYNAPSE Genes involved in Translocation of ZAP-70 to Immunological synapse
0.0 0.1 REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE Genes involved in mRNA Decay by 3' to 5' Exoribonuclease