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PRJNA195909:zebrafish embryo and larva development

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Results for msx1b+msx3

Z-value: 0.27

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Transcription factors associated with msx1b+msx3

Gene Symbol Gene ID Gene Info
ENSDARG00000008886 muscle segment homeobox 1b
ENSDARG00000015674 muscle segment homeobox 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
msx1bdr11_v1_chr1_+_49352900_493529000.752.0e-02Click!
msx3dr11_v1_chr13_+_24662238_246622380.432.5e-01Click!

Activity profile of msx1b+msx3 motif

Sorted Z-values of msx1b+msx3 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr1_-_19402802 0.34 ENSDART00000135552
RNA binding motif protein 47
chr14_+_9421510 0.29 ENSDART00000123652
high mobility group nucleosome binding domain 6
chr24_+_22485710 0.29 ENSDART00000146058
si:dkey-40h20.1
chr24_+_20373605 0.24 ENSDART00000112349
phospholipase C, delta 1a
chr8_-_15129573 0.24 ENSDART00000142358
BCAR3, NSP family adaptor protein
chr21_-_20328375 0.24 ENSDART00000079593
solute carrier family 26 (anion exchanger), member 1
chr8_+_26293673 0.22 ENSDART00000144977
monoglyceride lipase
chr15_-_20024205 0.22 ENSDART00000161379
autism susceptibility candidate 2b
chr13_+_30903816 0.21 ENSDART00000191727
excision repair cross-complementation group 6
chr1_-_58036509 0.20 ENSDART00000081122
si:ch211-114l13.7
chr17_+_24821627 0.20 ENSDART00000112389
WD repeat domain 43
chr6_+_50451337 0.18 ENSDART00000155051
myelocytomatosis oncogene homolog
chr20_+_25568694 0.17 ENSDART00000063107
ENSDART00000063128
cytochrome P450, family 2, subfamily P, polypeptide 7
chr15_+_46344655 0.16 ENSDART00000155893
si:ch1073-340i21.2
chr21_-_37973081 0.15 ENSDART00000136569
ripply transcriptional repressor 1
chr20_+_11731039 0.14 ENSDART00000152215
ENSDART00000152585
si:ch211-155o21.3
chr14_+_34490445 0.13 ENSDART00000132193
ENSDART00000148044
wingless-type MMTV integration site family, member 8a
chr15_-_14212777 0.13 ENSDART00000165572

chr15_-_25518084 0.13 ENSDART00000158594
hypoxia-inducible factor 1, alpha subunit, like
chr21_+_15592426 0.13 ENSDART00000138207
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b
chr6_+_39370587 0.12 ENSDART00000157165
ENSDART00000155079
si:dkey-195m11.8
chr4_+_54519511 0.12 ENSDART00000161653
zinc finger protein 974
chr25_+_19666621 0.12 ENSDART00000112746
zgc:171459
chr4_-_20292821 0.12 ENSDART00000136069
ENSDART00000192504
calcium channel, voltage-dependent, alpha 2/delta subunit 4a
chr11_-_11910225 0.11 ENSDART00000159922
si:ch211-69b7.6
chr11_+_24716837 0.11 ENSDART00000145217
zgc:153953
chr3_+_34140507 0.11 ENSDART00000131802
si:dkey-204f11.64
chr3_+_23692462 0.10 ENSDART00000145934
homeobox B7a
chr23_-_16485190 0.10 ENSDART00000155038
si:dkeyp-100a5.4
chr9_+_21277846 0.10 ENSDART00000139620
ENSDART00000110996
ENSDART00000111899
large tumor suppressor kinase 2
chr3_-_31079186 0.10 ENSDART00000145636
ENSDART00000140569
elongin B
elongin B
chr5_-_29534748 0.10 ENSDART00000159587

chr17_+_24851951 0.10 ENSDART00000180746
connexin 35.4
chr5_+_27897504 0.10 ENSDART00000130936
ADAM metallopeptidase domain 28
chr21_+_723998 0.09 ENSDART00000160956
ornithine decarboxylase antizyme 1b
chr11_+_37251825 0.09 ENSDART00000169804
interleukin 17 receptor C
chr13_+_18321140 0.09 ENSDART00000180947
eukaryotic translation initiation factor 4E family member 1c
chr2_+_16487443 0.09 ENSDART00000114980

chr2_+_10771787 0.08 ENSDART00000187782
growth factor independent 1A transcription repressor a
chr18_+_9171778 0.07 ENSDART00000101192
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
chr10_+_36178713 0.07 ENSDART00000140816
odorant receptor, family D, subfamily 108, member 3
chr15_+_5360407 0.07 ENSDART00000110420
odorant receptor, family A, subfamily 112, member 1
chr6_-_9695294 0.07 ENSDART00000162728
NOP58 ribonucleoprotein homolog (yeast)
chr12_+_3078221 0.07 ENSDART00000148835
ENSDART00000149427
sarcoglycan, alpha
chr2_+_6253246 0.07 ENSDART00000058256
ENSDART00000076700
zona pellucida glycoprotein 3b
chr16_+_35595312 0.07 ENSDART00000170438
si:ch211-1i11.3
chr14_-_1543834 0.06 ENSDART00000185876

chr1_+_55730205 0.06 ENSDART00000148075
adhesion G protein-coupled receptor E10
chr9_+_35832294 0.06 ENSDART00000130549
ENSDART00000122169
si:dkey-67c22.2
chr4_-_67969695 0.06 ENSDART00000190016
si:ch211-223k15.1
chr1_+_54626491 0.06 ENSDART00000136063
si:ch211-202h22.9
chr4_+_77047067 0.06 ENSDART00000174206
zinc finger protein 1009
chr10_+_39212898 0.06 ENSDART00000159501
STT3A, subunit of the oligosaccharyltransferase complex (catalytic)
chr15_-_37719015 0.05 ENSDART00000154875
si:dkey-117a8.1
chr10_-_44560165 0.05 ENSDART00000181217
ENSDART00000076084
nucleophosmin/nucleoplasmin, 2b
chr18_+_50461981 0.05 ENSDART00000158761

chr4_-_12997348 0.05 ENSDART00000171451
si:dkey-6a5.3
chr10_+_39212601 0.04 ENSDART00000168778
STT3A, subunit of the oligosaccharyltransferase complex (catalytic)
chr22_+_2769236 0.04 ENSDART00000141836
si:dkey-20i20.10
chr4_-_42408339 0.04 ENSDART00000172612
si:ch211-59d8.3
chr4_-_62714083 0.04 ENSDART00000188299
si:dkey-28k24.2
chr16_-_7379328 0.04 ENSDART00000060447
mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)
chr7_+_8324506 0.04 ENSDART00000168110
si:dkey-185m8.2
chr15_-_19051152 0.04 ENSDART00000186453
Rho GTPase activating protein 32a
chr23_+_44427188 0.04 ENSDART00000160207
eukaryotic translation initiation factor 4E family member 2 related sequence 1
chr12_-_31457301 0.03 ENSDART00000043887
ENSDART00000148603
acyl-CoA synthetase long chain family member 5
chr2_-_20788698 0.03 ENSDART00000181823

chr5_+_872299 0.03 ENSDART00000130042
far upstream element (FUSE) binding protein 3
chr4_-_9891874 0.03 ENSDART00000067193
adrenomedullin 2a
chr7_-_8374950 0.03 ENSDART00000057101
aerolysin-like protein
chr17_+_26352372 0.03 ENSDART00000155177
glutamate receptor, ionotropic, delta 1a
chr24_+_26345609 0.03 ENSDART00000186844
leucine rich repeat containing 34
chr22_+_9761930 0.03 ENSDART00000181107

chr10_+_36194527 0.03 ENSDART00000076810
odorant receptor, family D, subfamily 108, member 1
chr25_+_16116740 0.03 ENSDART00000139778
fatty acyl CoA reductase 1
chr24_+_26345427 0.03 ENSDART00000089756
leucine rich repeat containing 34
chr10_+_21867307 0.03 ENSDART00000126629
cerebellin 17
chr5_-_47727819 0.03 ENSDART00000165249
cytochrome c oxidase, subunit VIIc
chr16_-_26855936 0.03 ENSDART00000167320
ENSDART00000078119
INO80 complex subunit C
chr21_-_22648007 0.03 ENSDART00000121788
grass carp reovirus (GCRV)-induced gene 2l
chr7_-_8324927 0.03 ENSDART00000102535
coagulation factor XIII, A1 polypeptide b
chr17_+_7513673 0.02 ENSDART00000156674
kelch-like family member 10b, tandem duplicate 1
chr4_+_62576422 0.02 ENSDART00000180679
si:ch211-79g12.2
chr11_-_6974022 0.02 ENSDART00000172851
si:ch211-43f4.1
chr15_+_36188171 0.02 ENSDART00000156598
mannan-binding lectin serine peptidase 1
chr10_+_40568735 0.02 ENSDART00000136468
ENSDART00000182841
trace amine associated receptor 18i
chr16_+_33144112 0.02 ENSDART00000183149
rhomboid, veinlet-like 2 (Drosophila)
chr15_-_37683768 0.02 ENSDART00000059609
si:dkey-117a8.3
chr24_+_17345521 0.02 ENSDART00000024722
ENSDART00000154250
enhancer of zeste 2 polycomb repressive complex 2 subunit
chr22_-_26274177 0.02 ENSDART00000060978
WD repeat domain containing 83
chr21_-_8085635 0.02 ENSDART00000082790
si:dkey-163m14.2
chr15_-_37709072 0.02 ENSDART00000157115
si:dkey-117a8.2
chr11_-_25538341 0.02 ENSDART00000171560
si:dkey-245f22.3
chr7_-_69647988 0.02 ENSDART00000169943

chr25_+_10947743 0.02 ENSDART00000073381
major histocompatibility complex class I LFA
chr5_+_7564644 0.02 ENSDART00000192173

chr10_+_11355841 0.02 ENSDART00000193067
ENSDART00000064215
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)
chr24_-_25004553 0.02 ENSDART00000080997
ENSDART00000136860
zinc finger, DHHC-type containing 20b
chr6_-_19042294 0.02 ENSDART00000159461
si:rp71-81e14.2
chr10_+_17235370 0.02 ENSDART00000038780
signal peptide peptidase 3
chr16_+_33144306 0.02 ENSDART00000101953
rhomboid, veinlet-like 2 (Drosophila)
chr15_-_37620167 0.01 ENSDART00000059582
si:ch211-137j23.8
chr21_-_38730557 0.01 ENSDART00000150984
ENSDART00000111885
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
chr3_+_2719243 0.01 ENSDART00000189256

chr5_+_4806851 0.01 ENSDART00000067599
angiopoietin-like 2a
chr15_-_37673733 0.01 ENSDART00000154513
si:dkey-117a8.4
chr12_-_18883079 0.01 ENSDART00000178619
shisa family member 8b
chr22_+_18816662 0.01 ENSDART00000132476
calcium channel, voltage-dependent, beta subunit associated regulatory protein b
chr2_+_30369116 0.01 ENSDART00000142137
peptidase inhibitor 15b
chr13_+_27328098 0.01 ENSDART00000037585
Mab-21 domain containing 1
chr8_-_53680653 0.01 ENSDART00000164739
wingless-type MMTV integration site family, member 5a
chr4_-_75681004 0.01 ENSDART00000186296
si:dkey-71l4.5
chr16_+_5774977 0.01 ENSDART00000134202
cholecystokinin a
chr10_-_40416054 0.01 ENSDART00000137947
ENSDART00000143606
trace amine associated receptor 20j
chr1_+_40801448 0.01 ENSDART00000187394
carboxypeptidase Z
chr9_-_35633827 0.01 ENSDART00000077745
zona pellucida glycoprotein 2, like 1
chr14_+_6535426 0.01 ENSDART00000055961
tRNA-histidine guanylyltransferase 1-like
chr17_+_15041647 0.01 ENSDART00000108999
sterile alpha motif domain containing 4A
chr22_+_9114416 0.01 ENSDART00000190169
NACHT, LRR and PYD domains-containing protein 15
chr15_+_31303355 0.01 ENSDART00000143423
odorant receptor, family F, subfamily 116, member 2
chr22_+_5532003 0.01 ENSDART00000106174
si:ch73-256j6.2
chr15_-_37733238 0.01 ENSDART00000115178
si:dkey-42l23.7
chr6_+_52877147 0.01 ENSDART00000174370
odorant receptor, family H, subfamily 137, member 8
chr8_-_27656765 0.01 ENSDART00000078491
Moloney leukemia virus 10b, tandem duplicate 2
chr22_+_1615691 0.01 ENSDART00000171555
si:ch211-255f4.13
chr11_+_42726712 0.00 ENSDART00000028955
tudor domain containing 3
chr25_+_6471401 0.00 ENSDART00000132927
sorting nexin 33
chr18_+_34225520 0.00 ENSDART00000126115
vomeronasal 2 receptor, l1
chr3_+_32663865 0.00 ENSDART00000190240
si:dkey-16l2.16
chr7_+_24496894 0.00 ENSDART00000149994
negative elongation factor complex member A
chr24_-_9979342 0.00 ENSDART00000138576
ENSDART00000191206
zgc:171977
chr20_-_47188966 0.00 ENSDART00000152965
si:dkeyp-104f11.9
chr6_-_18971063 0.00 ENSDART00000188163
septin 9b
chr3_-_31715714 0.00 ENSDART00000051542
coiled-coil domain containing 47
chr8_-_7567815 0.00 ENSDART00000132536
host cell factor C1b
chr15_-_37767901 0.00 ENSDART00000154763
si:dkey-42l23.4

Network of associatons between targets according to the STRING database.

First level regulatory network of msx1b+msx3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:2000742 regulation of anterior head development(GO:2000742)
0.1 0.2 GO:0019532 oxalate transport(GO:0019532)
0.0 0.2 GO:0006283 transcription-coupled nucleotide-excision repair(GO:0006283)
0.0 0.1 GO:0007508 larval development(GO:0002164) larval heart development(GO:0007508)
0.0 0.0 GO:0010747 regulation of plasma membrane long-chain fatty acid transport(GO:0010746) positive regulation of plasma membrane long-chain fatty acid transport(GO:0010747) plasma membrane long-chain fatty acid transport(GO:0015911) fatty acid transmembrane transport(GO:1902001) positive regulation of anion transmembrane transport(GO:1903961) regulation of fatty acid transport(GO:2000191) positive regulation of fatty acid transport(GO:2000193)
0.0 0.2 GO:0033138 positive regulation of peptidyl-serine phosphorylation(GO:0033138)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0097189 apoptotic body(GO:0097189)
0.0 0.1 GO:0043034 costamere(GO:0043034)
0.0 0.1 GO:0030891 VCB complex(GO:0030891)
0.0 0.1 GO:0035060 brahma complex(GO:0035060)
0.0 0.1 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.0 0.1 GO:0016012 sarcoglycan complex(GO:0016012)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0004576 oligosaccharyl transferase activity(GO:0004576) dolichyl-diphosphooligosaccharide-protein glycotransferase activity(GO:0004579)
0.0 0.1 GO:0008073 ornithine decarboxylase inhibitor activity(GO:0008073)
0.0 0.2 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.0 0.3 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.0 0.2 GO:0019531 oxalate transmembrane transporter activity(GO:0019531)
0.0 0.0 GO:0048030 disaccharide binding(GO:0048030)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME HORMONE SENSITIVE LIPASE HSL MEDIATED TRIACYLGLYCEROL HYDROLYSIS Genes involved in Hormone-sensitive lipase (HSL)-mediated triacylglycerol hydrolysis