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PRJNA195909:zebrafish embryo and larva development

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Results for nkx6.3

Z-value: 0.57

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Transcription factors associated with nkx6.3

Gene Symbol Gene ID Gene Info
nkx6.3
ENSDARG00000060529 NK6 homeobox 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
nkx6.3dr11_v1_chr8_+_38417461_384174610.491.8e-01Click!

Activity profile of nkx6.3 motif

Sorted Z-values of nkx6.3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr21_+_28445052 0.66 ENSDART00000077871
pygma
phosphorylase, glycogen, muscle A
chr20_-_48485354 0.63 ENSDART00000124040
ENSDART00000148437
insm1a
insulinoma-associated 1a
chr17_+_15433518 0.60 ENSDART00000026180
fabp7a
fatty acid binding protein 7, brain, a
chr17_+_15433671 0.58 ENSDART00000149568
fabp7a
fatty acid binding protein 7, brain, a
chr21_+_34088377 0.51 ENSDART00000170070
mtmr1b
myotubularin related protein 1b
chr13_+_31286076 0.48 ENSDART00000142725
gdf10a
growth differentiation factor 10a
chr16_+_46111849 0.44 ENSDART00000172232
sv2a
synaptic vesicle glycoprotein 2A
chr16_-_12173554 0.42 ENSDART00000110567
ENSDART00000155935
clstn3
calsyntenin 3
chr14_+_14662116 0.40 ENSDART00000161693
cetn2
centrin, EF-hand protein, 2
chr12_+_48803098 0.38 ENSDART00000074768
ppifb
peptidylprolyl isomerase Fb
chr21_+_34088110 0.33 ENSDART00000145123
ENSDART00000029599
ENSDART00000147519
mtmr1b
myotubularin related protein 1b
chr2_+_2223837 0.27 ENSDART00000101038
ENSDART00000129354
tmie
transmembrane inner ear
chr9_-_31278048 0.26 ENSDART00000022204
zic5
zic family member 5 (odd-paired homolog, Drosophila)
chr13_+_22476742 0.24 ENSDART00000078759
ENSDART00000130101
ENSDART00000137220
ENSDART00000133065
ENSDART00000147348
ldb3a
LIM domain binding 3a
chr6_-_37469775 0.20 ENSDART00000156546
plcxd1
phosphatidylinositol-specific phospholipase C, X domain containing 1
chr16_-_12173399 0.20 ENSDART00000142574
clstn3
calsyntenin 3
chr2_-_9818640 0.18 ENSDART00000139499
ENSDART00000165548
ENSDART00000012442
ENSDART00000046587
ap2m1b
adaptor-related protein complex 2, mu 1 subunit, b
chr18_+_2228737 0.18 ENSDART00000165301
rab27a
RAB27A, member RAS oncogene family
chr21_-_13123176 0.16 ENSDART00000144866
ENSDART00000024616
fam219aa
family with sequence similarity 219, member Aa
chr19_+_1688727 0.16 ENSDART00000115136
ENSDART00000166744
dennd3a
DENN/MADD domain containing 3a
chr20_-_9095105 0.16 ENSDART00000140792
oma1
OMA1 zinc metallopeptidase
chr3_+_45687266 0.15 ENSDART00000131652
gpr146
G protein-coupled receptor 146
chr4_+_4509996 0.15 ENSDART00000028694
gnsa
glucosamine (N-acetyl)-6-sulfatase a
chr3_-_58798377 0.14 ENSDART00000161248
si:ch73-281f12.4
si:ch73-281f12.4
chr20_-_45060241 0.13 ENSDART00000185227
klhl29
kelch-like family member 29
chr17_-_31483469 0.12 ENSDART00000062907
ENSDART00000061547
ltk
leukocyte receptor tyrosine kinase
chr21_-_26918901 0.12 ENSDART00000100685
lrfn4a
leucine rich repeat and fibronectin type III domain containing 4a
chr12_-_10409961 0.10 ENSDART00000149521
ENSDART00000052001
eef2k
eukaryotic elongation factor 2 kinase
chr20_-_40755614 0.10 ENSDART00000061247
cx32.3
connexin 32.3
chr3_-_60175470 0.10 ENSDART00000156597
si:ch73-364h19.1
si:ch73-364h19.1
chr6_-_16717878 0.10 ENSDART00000153552
nomo
nodal modulator
chr16_-_42965192 0.09 ENSDART00000113714
mtx1a
metaxin 1a
chr9_-_43538328 0.09 ENSDART00000140526
znf385b
zinc finger protein 385B
chr2_-_55298075 0.09 ENSDART00000186404
ENSDART00000149062
rab8a
RAB8A, member RAS oncogene family
chr6_+_4033832 0.09 ENSDART00000159952
sema5bb
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Bb
chr5_-_30620625 0.08 ENSDART00000098273
tcnl
transcobalamin like
chr20_-_43750771 0.08 ENSDART00000100605
ttc32
tetratricopeptide repeat domain 32
chr19_-_205104 0.07 ENSDART00000011890
zbtb22a
zinc finger and BTB domain containing 22a
chr3_-_21010979 0.07 ENSDART00000109578
fam117aa
family with sequence similarity 117, member Aa
chr9_-_9415000 0.07 ENSDART00000146210
si:ch211-214p13.9
si:ch211-214p13.9
chr25_-_3058687 0.06 ENSDART00000149117
ENSDART00000137950
si:ch1073-296i8.2
si:ch1073-296i8.2
chr10_+_39248911 0.05 ENSDART00000170079
ENSDART00000167974
foxred1
FAD-dependent oxidoreductase domain containing 1
chr25_+_24291156 0.04 ENSDART00000083407
b4galnt4a
beta-1,4-N-acetyl-galactosaminyl transferase 4a
chr15_+_31344472 0.04 ENSDART00000146695
ENSDART00000159182
ENSDART00000060125
or107-1
odorant receptor, family D, subfamily 107, member 1
chr12_-_6880694 0.03 ENSDART00000171846
pcdh15b
protocadherin-related 15b
chr20_+_40457599 0.03 ENSDART00000017553
serinc1
serine incorporator 1
chr18_-_17485419 0.03 ENSDART00000018764
foxl1
forkhead box L1
chr3_+_18795570 0.01 ENSDART00000042368
fahd1
fumarylacetoacetate hydrolase domain containing 1
chr11_-_2838699 0.01 ENSDART00000066189
lhfpl5a
LHFPL tetraspan subfamily member 5a
chr11_-_2478374 0.01 ENSDART00000173205
si:ch73-267c23.10
si:ch73-267c23.10

Network of associatons between targets according to the STRING database.

First level regulatory network of nkx6.3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0052576 carbohydrate localization(GO:0052575) carbohydrate storage(GO:0052576)
0.1 0.6 GO:0060221 retinal rod cell differentiation(GO:0060221)
0.1 0.6 GO:0051965 positive regulation of synapse assembly(GO:0051965)
0.0 0.3 GO:0033278 cell proliferation in midbrain(GO:0033278)
0.0 0.4 GO:0070301 cellular response to hydrogen peroxide(GO:0070301)
0.0 0.1 GO:0048210 Golgi vesicle fusion to target membrane(GO:0048210)
0.0 0.2 GO:1990845 adaptive thermogenesis(GO:1990845)
0.0 0.1 GO:1900145 nodal signaling pathway involved in determination of left/right asymmetry(GO:0038107) regulation of nodal signaling pathway involved in determination of left/right asymmetry(GO:1900145)
0.0 0.1 GO:0070285 pigment cell development(GO:0070285)
0.0 0.8 GO:0046856 phosphatidylinositol dephosphorylation(GO:0046856)
0.0 0.4 GO:0007099 centriole replication(GO:0007099)
0.0 0.2 GO:0032483 regulation of Rab protein signal transduction(GO:0032483)
0.0 0.5 GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation(GO:0010862)
0.0 0.3 GO:0048752 semicircular canal morphogenesis(GO:0048752)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0030122 AP-2 adaptor complex(GO:0030122)
0.0 0.6 GO:0017053 transcriptional repressor complex(GO:0017053)
0.0 0.1 GO:0019815 B cell receptor complex(GO:0019815)
0.0 0.1 GO:0001401 mitochondrial sorting and assembly machinery complex(GO:0001401)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 GO:0008184 phosphorylase activity(GO:0004645) glycogen phosphorylase activity(GO:0008184)
0.1 0.8 GO:0052629 phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.1 1.2 GO:0005504 fatty acid binding(GO:0005504)
0.0 0.4 GO:0016018 cyclosporin A binding(GO:0016018)
0.0 0.2 GO:0051393 muscle alpha-actinin binding(GO:0051371) alpha-actinin binding(GO:0051393)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME MTORC1 MEDIATED SIGNALLING Genes involved in mTORC1-mediated signalling