Project

PRJNA195909:zebrafish embryo and larva development

Navigation
Downloads

Results for rxrbb

Z-value: 0.40

Motif logo

Transcription factors associated with rxrbb

Gene Symbol Gene ID Gene Info
ENSDARG00000002006 retinoid x receptor, beta b
ENSDARG00000117079 retinoid x receptor, beta b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
rxrbbdr11_v1_chr16_+_18534834_18534834-0.442.3e-01Click!

Activity profile of rxrbb motif

Sorted Z-values of rxrbb motif

Promoter Log-likelihood Transcript Gene Gene Info
chr4_-_16451375 0.62 ENSDART00000192700
ENSDART00000128835
wu:fc23c09
chr19_-_3056235 0.51 ENSDART00000137020
block of proliferation 1
chr4_+_45274792 0.50 ENSDART00000150295
zinc finger protein 1138
chr4_+_37503994 0.46 ENSDART00000158217
zinc finger protein 1102
chr4_-_37587110 0.39 ENSDART00000169302
zinc finger protein 1100
chr4_+_47656992 0.38 ENSDART00000161148
zinc finger protein 1040
chr4_-_64605318 0.37 ENSDART00000170391
zinc finger protein 1099
chr18_-_43866526 0.36 ENSDART00000111309
trehalase (brush-border membrane glycoprotein)
chr1_+_12195700 0.35 ENSDART00000040307
tudor domain containing 7 a
chr4_-_38421217 0.33 ENSDART00000164517
szinc finger protein 1092
chr4_-_56157199 0.32 ENSDART00000169806
si:ch211-207e19.15
chr5_-_3839285 0.31 ENSDART00000122292
MLX interacting protein like
chr4_+_64921810 0.30 ENSDART00000157654

chr3_+_39566999 0.27 ENSDART00000146867
aldolase a, fructose-bisphosphate, a
chr3_-_36419641 0.26 ENSDART00000173545
component of oligomeric golgi complex 1
chr18_-_43866001 0.24 ENSDART00000150218
trehalase (brush-border membrane glycoprotein)
chr22_-_38274188 0.24 ENSDART00000139420
ENSDART00000015117
ELAV like neuron-specific RNA binding protein 2
chr7_-_24520866 0.23 ENSDART00000077039
fatty acid amide hydrolase 2b
chr23_+_30730121 0.23 ENSDART00000134141
additional sex combs like transcriptional regulator 1
chr9_+_22782027 0.22 ENSDART00000090816
replication timing regulatory factor 1
chr24_+_39034090 0.21 ENSDART00000185763
calpain 15
chr23_+_2914577 0.21 ENSDART00000184897
zgc:158828
chr21_-_1640547 0.21 ENSDART00000151041
zgc:152948
chr17_+_21817382 0.20 ENSDART00000079011
ENSDART00000189387
IKAROS family zinc finger 5
chr24_+_39137001 0.19 ENSDART00000181086
ENSDART00000183724
ENSDART00000193466
TBC1 domain family, member 24
chr25_+_36348401 0.19 ENSDART00000103006
histone cluster 1 H2A family member 3
chr19_+_2631565 0.19 ENSDART00000171487
family with sequence similarity 126, member A
chr12_+_2648043 0.19 ENSDART00000082220
growth differentiation factor 2
chr7_+_24520518 0.19 ENSDART00000173604
bloodthirsty-related gene family, member 9
chr18_-_158541 0.19 ENSDART00000188914
ENSDART00000191052
transient receptor potential cation channel, subfamily M, member 7
chr20_-_51656512 0.18 ENSDART00000129965

chr23_-_16737161 0.18 ENSDART00000132573
si:ch211-224l10.4
chr22_-_7050 0.18 ENSDART00000127829
ATPase family, AAA domain containing 3
chr8_+_8012570 0.18 ENSDART00000183429
si:ch211-169p10.1
chr5_-_3885727 0.17 ENSDART00000143250
MLX interacting protein like
chr16_-_29146624 0.17 ENSDART00000159814
ENSDART00000009826
myocyte enhancer factor 2d
chr5_-_20491198 0.17 ENSDART00000183051
ENSDART00000144232
FIC domain containing
chr23_-_18595020 0.17 ENSDART00000187032
ENSDART00000191047
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma
chr25_-_35140746 0.17 ENSDART00000129969
si:ch211-113a14.19
chr21_-_21515466 0.17 ENSDART00000147593
nectin cell adhesion molecule 3b
chr18_+_25546227 0.16 ENSDART00000085824
peroxisomal biogenesis factor 11 alpha
chr18_+_30441740 0.16 ENSDART00000189074
Gse1 coiled-coil protein
chr15_+_22448456 0.15 ENSDART00000040542
ENSDART00000190270
ENSDART00000185897
Rho guanine nucleotide exchange factor (GEF) 12a
chr18_+_27515640 0.15 ENSDART00000181593
tumor protein p53 inducible protein 11b
chr21_+_1119046 0.15 ENSDART00000184678

chr3_-_34561624 0.15 ENSDART00000129313
septin 9a
chr10_+_589501 0.15 ENSDART00000188415

chr9_-_32300611 0.14 ENSDART00000127938
heat shock 60 protein 1
chr20_+_21595244 0.14 ENSDART00000010643
estrogen receptor 2a
chr12_+_46708920 0.14 ENSDART00000153089
exocyst complex component 7
chr13_-_36418921 0.14 ENSDART00000135804
ddb1 and cul4 associated factor 5
chr2_+_22659787 0.14 ENSDART00000043956
zgc:161973
chr6_+_40952031 0.14 ENSDART00000189219
POZ (BTB) and AT hook containing zinc finger 1
chr5_-_33255759 0.14 ENSDART00000085531
protein kinase, AMP-activated, alpha 1 catalytic subunit
chr23_-_45319592 0.14 ENSDART00000189861
coiled-coil domain containing 171
chr11_+_19433936 0.13 ENSDART00000162081
prickle homolog 2b
chr15_+_47618221 0.13 ENSDART00000168722
PAF1 homolog, Paf1/RNA polymerase II complex component
chr12_+_26670778 0.13 ENSDART00000144355
Rho GTPase activating protein 12b
chr5_-_56416188 0.13 ENSDART00000146773
acetyl-CoA carboxylase alpha
chr17_+_21817859 0.13 ENSDART00000143832
ENSDART00000141462
IKAROS family zinc finger 5
chr9_-_32300783 0.12 ENSDART00000078596
heat shock 60 protein 1
chr22_-_10752471 0.12 ENSDART00000081191
SAS-6 centriolar assembly protein
chr8_-_4097722 0.12 ENSDART00000135006
cut-like homeobox 2b
chr10_-_17745345 0.12 ENSDART00000132690
ENSDART00000135376
si:dkey-200l5.4
chr12_-_31457301 0.12 ENSDART00000043887
ENSDART00000148603
acyl-CoA synthetase long chain family member 5
chr11_-_42230491 0.12 ENSDART00000164423

chr13_+_21826369 0.12 ENSDART00000165150
ENSDART00000192115
zinc finger, SWIM-type containing 8
chr1_-_58868306 0.12 ENSDART00000166615
dynamin 2b
chr23_-_44786844 0.12 ENSDART00000148669
si:ch73-269m23.5
chr19_+_3056450 0.12 ENSDART00000141324
ENSDART00000082353
heat shock transcription factor 1
chr19_+_5146460 0.11 ENSDART00000150740
si:dkey-89b17.4
chr24_-_7587401 0.11 ENSDART00000093163
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)
chr13_-_4018888 0.11 ENSDART00000058238
tight junction associated protein 1 (peripheral)
chr10_+_45128375 0.10 ENSDART00000164805
calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2
chr24_-_29586082 0.10 ENSDART00000136763
vav 3 guanine nucleotide exchange factor a
chr24_-_1021318 0.10 ENSDART00000181403
v-ral simian leukemia viral oncogene homolog Aa (ras related)
chr17_-_27200634 0.10 ENSDART00000185332
ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
chr17_+_45737992 0.10 ENSDART00000135073
ENSDART00000143525
ENSDART00000158165
ENSDART00000184167
ENSDART00000109525
asparaginase homolog (S. cerevisiae)
chr17_-_45733401 0.09 ENSDART00000185727
ADP-ribosylation factor 6b
chr22_-_3595439 0.09 ENSDART00000083308
protein tyrosine phosphatase, receptor type, s, a
chr19_+_20713424 0.09 ENSDART00000129730
RAB5A, member RAS oncogene family, a
chr4_-_858434 0.09 ENSDART00000006961
sine oculis binding protein homolog (Drosophila) b
chr17_+_450956 0.09 ENSDART00000183022
ENSDART00000171386
zgc:194887
chr21_-_308852 0.09 ENSDART00000151613
LHFPL tetraspan subfamily member 2a
chr20_-_26937453 0.09 ENSDART00000139756
finTRIM family, member 97
chr20_+_46286082 0.09 ENSDART00000073519
trace amine associated receptor 14f
chr25_-_35113891 0.08 ENSDART00000190724
zgc:165555
chr9_-_29579908 0.08 ENSDART00000140876
centromere protein J
chr12_-_48671612 0.08 ENSDART00000007202
zgc:92749
chr18_+_27926839 0.08 ENSDART00000191835
homeodomain interacting protein kinase 3b
chr5_+_43870389 0.08 ENSDART00000141002
zgc:112966
chr7_+_7495034 0.08 ENSDART00000102629
ENSDART00000180475
nitrilase 1
chr14_+_30413312 0.08 ENSDART00000186864
CCR4-NOT transcription complex, subunit 7
chr6_-_28117995 0.08 ENSDART00000147253
si:ch73-194h10.3
chr9_-_37613792 0.08 ENSDART00000138345
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Ba
chr4_-_75172216 0.08 ENSDART00000127522
N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
chr8_-_45835056 0.07 ENSDART00000022242
oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide)
chr7_+_34296789 0.07 ENSDART00000052471
ENSDART00000173798
ENSDART00000173778
butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1
chr7_+_25000060 0.07 ENSDART00000039265
ENSDART00000141814
N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
chr12_+_17439580 0.07 ENSDART00000189257
ATPase family, AAA domain containing 1b
chr7_+_34297271 0.06 ENSDART00000180342
butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1
chr5_-_27994679 0.06 ENSDART00000132740
protein phosphatase 3, catalytic subunit, gamma isozyme, a
chr25_+_15933411 0.06 ENSDART00000191581
PTPRF interacting protein, binding protein 2b (liprin beta 2)
chr10_-_25204034 0.06 ENSDART00000161100
si:ch211-214k5.6
chr19_-_9867001 0.06 ENSDART00000091695
calcium channel, voltage-dependent, gamma subunit 7a
chr9_+_34380299 0.06 ENSDART00000131705
lysosomal-associated membrane protein 1
chr8_+_8699085 0.06 ENSDART00000021209
ubiquitously-expressed, prefoldin-like chaperone
chr11_-_19775182 0.06 ENSDART00000037894
nicotinamide phosphoribosyltransferase b
chr4_+_2655358 0.06 ENSDART00000007638
B cell receptor associated protein 29
chr5_+_24282570 0.05 ENSDART00000041905
zinc finger, DHHC-type containing 23a
chr12_+_19958845 0.05 ENSDART00000193248
excision repair cross-complementation group 4
chr20_+_25581627 0.05 ENSDART00000030229
cytochrome P450, family 2, subfamily P, polypeptide 9
chr23_-_27050083 0.05 ENSDART00000142324
ENSDART00000133249
ENSDART00000138751
ENSDART00000128718
zgc:66440
chr11_-_23332592 0.05 ENSDART00000125024
golgi transport 1A
chr16_+_25809235 0.05 ENSDART00000181196
immunity-related GTPase family, q1
chr25_+_31238606 0.05 ENSDART00000149439
troponin I type 2a (skeletal, fast), tandem duplicate 2
chr12_+_1286642 0.05 ENSDART00000157467
phosphatidylethanolamine N-methyltransferase
chr16_-_54978981 0.05 ENSDART00000154023
WD and tetratricopeptide repeats 1
chr23_-_44903048 0.04 ENSDART00000149103
FH2 domain containing 5
chr14_-_13048355 0.04 ENSDART00000166434
si:dkey-35h6.1
chr3_+_25999477 0.04 ENSDART00000024316
minichromosome maintenance complex component 5
chr6_+_60036767 0.04 ENSDART00000155009
transglutaminase 8
chr2_-_57110477 0.04 ENSDART00000181132
solute carrier family 25, member 42
chr7_-_38183331 0.04 ENSDART00000149382
ATP-binding cassette, sub-family C (CFTR/MRP), member 12
chr2_-_56649883 0.04 ENSDART00000191786
glutathione peroxidase 4b
chr23_-_42810664 0.04 ENSDART00000102328
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2a
chr3_+_12718100 0.04 ENSDART00000162343
ENSDART00000192425
cytochrome P450, family 2, subfamily k, polypeptide 20
chr9_-_25255490 0.04 ENSDART00000141502
5-hydroxytryptamine (serotonin) receptor 2A, genome duplicate a
chr4_+_68519945 0.03 ENSDART00000171148
si:dkey-16p6.1
chr13_-_3351708 0.03 ENSDART00000042875
si:ch73-193i2.2
chr23_+_21405201 0.03 ENSDART00000144409
intermediate filament family orphan 2a
chr17_-_7371564 0.03 ENSDART00000060336
RAB32b, member RAS oncogene family
chr20_-_18382708 0.03 ENSDART00000170864
ENSDART00000166762
ENSDART00000191333
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
chr1_+_58139102 0.03 ENSDART00000134826
si:ch211-15j1.4
chr1_+_58303892 0.03 ENSDART00000147678

chr21_-_37435162 0.03 ENSDART00000133585
family with sequence similarity 114, member A2
chr24_-_2843107 0.02 ENSDART00000165290
cytochrome b5 type A (microsomal)
chr12_-_33568174 0.02 ENSDART00000142329
tudor and KH domain containing
chr19_+_11214007 0.02 ENSDART00000127362
si:ch73-109i22.2
chr25_-_31118923 0.02 ENSDART00000009126
ENSDART00000188286
v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
chr3_+_301479 0.02 ENSDART00000165169

chr2_-_22660232 0.02 ENSDART00000174742
THAP domain containing 4
chr24_-_1341543 0.02 ENSDART00000169341
neuropilin 1a
chr7_-_8156169 0.02 ENSDART00000182960
ENSDART00000190184
ENSDART00000190885
ENSDART00000189867
ENSDART00000160836
si:cabz01030277.1
si:ch211-163c2.3
chr6_+_13206516 0.02 ENSDART00000036927
NADH dehydrogenase (ubiquinone) Fe-S protein 1
chr25_+_18587338 0.02 ENSDART00000180287
MET proto-oncogene, receptor tyrosine kinase
chr11_-_11910225 0.01 ENSDART00000159922
si:ch211-69b7.6
chr1_+_58353661 0.01 ENSDART00000140074
si:dkey-222h21.2
chr13_-_41546779 0.01 ENSDART00000163331
protocadherin-related 15a
chr20_+_43379029 0.01 ENSDART00000142486
ENSDART00000186486
unc-93 homolog A
chr3_-_36750068 0.01 ENSDART00000173388
ATP-binding cassette, sub-family C (CFTR/MRP), member 6b, tandem duplicate 1
chr1_+_58119117 0.01 ENSDART00000146788
si:ch211-15j1.5
chr2_-_57076687 0.01 ENSDART00000161523
solute carrier family 25, member 42
chr19_+_19032141 0.00 ENSDART00000192432
copine IVb
chr1_-_8691969 0.00 ENSDART00000152153
ATP-binding cassette, sub-family G (WHITE), member 2b
chr11_-_3571605 0.00 ENSDART00000167863
si:dkey-33m11.7
chr23_+_41679586 0.00 ENSDART00000067662

chr1_+_58260886 0.00 ENSDART00000110453
si:dkey-222h21.8
chr16_-_46645396 0.00 ENSDART00000131485
transmembrane protein 176l.2
chr1_+_9994811 0.00 ENSDART00000143719
ENSDART00000110749
si:dkeyp-75b4.10
chr1_+_58094551 0.00 ENSDART00000146316
si:ch211-114l13.1
chr9_-_46382637 0.00 ENSDART00000085738
lactase
chr1_+_58182400 0.00 ENSDART00000144784
si:ch211-15j1.1
chr1_+_57050899 0.00 ENSDART00000152601
si:ch211-1f22.14

Network of associatons between targets according to the STRING database.

First level regulatory network of rxrbb

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.


View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0005991 trehalose metabolic process(GO:0005991)
0.1 0.3 GO:0032755 positive regulation of interleukin-6 production(GO:0032755) protein import into mitochondrial intermembrane space(GO:0045041)
0.1 0.3 GO:0071908 determination of intestine left/right asymmetry(GO:0071908)
0.1 0.2 GO:0010961 cellular magnesium ion homeostasis(GO:0010961)
0.0 0.4 GO:0051673 membrane disruption in other organism(GO:0051673)
0.0 0.1 GO:2000193 regulation of plasma membrane long-chain fatty acid transport(GO:0010746) positive regulation of plasma membrane long-chain fatty acid transport(GO:0010747) plasma membrane long-chain fatty acid transport(GO:0015911) fatty acid transmembrane transport(GO:1902001) positive regulation of anion transmembrane transport(GO:1903961) regulation of fatty acid transport(GO:2000191) positive regulation of fatty acid transport(GO:2000193)
0.0 0.2 GO:0007252 I-kappaB phosphorylation(GO:0007252)
0.0 0.1 GO:2001295 malonyl-CoA biosynthetic process(GO:2001295)
0.0 0.3 GO:0030719 P granule organization(GO:0030719)
0.0 0.1 GO:0048169 regulation of long-term neuronal synaptic plasticity(GO:0048169)
0.0 0.5 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.0 0.2 GO:0016559 peroxisome fission(GO:0016559)
0.0 0.1 GO:0045329 carnitine biosynthetic process(GO:0045329)
0.0 0.1 GO:1901255 nucleotide-excision repair involved in interstrand cross-link repair(GO:1901255)
0.0 0.1 GO:0040016 embryonic cleavage(GO:0040016)
0.0 0.1 GO:0071392 cellular response to estradiol stimulus(GO:0071392)
0.0 0.2 GO:0030241 skeletal muscle myosin thick filament assembly(GO:0030241)
0.0 0.3 GO:0001966 thigmotaxis(GO:0001966)
0.0 0.1 GO:0061511 centriole elongation(GO:0061511)
0.0 0.0 GO:0045922 negative regulation of fatty acid metabolic process(GO:0045922)
0.0 0.1 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.0 0.1 GO:0006474 N-terminal protein amino acid acetylation(GO:0006474)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0070545 PeBoW complex(GO:0070545)
0.0 0.1 GO:0098536 deuterosome(GO:0098536)
0.0 0.1 GO:0035327 transcriptionally active chromatin(GO:0035327)
0.0 0.2 GO:0035517 PR-DUB complex(GO:0035517)
0.0 0.2 GO:0008385 IkappaB kinase complex(GO:0008385)
0.0 0.1 GO:0098842 postsynaptic early endosome(GO:0098842)
0.0 0.2 GO:0005779 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.0 0.3 GO:0017119 Golgi transport complex(GO:0017119)
0.0 0.1 GO:0000110 nucleotide-excision repair factor 1 complex(GO:0000110)
0.0 0.1 GO:0005955 calcineurin complex(GO:0005955)
0.0 0.3 GO:0043186 P granule(GO:0043186)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0004555 alpha,alpha-trehalase activity(GO:0004555) trehalase activity(GO:0015927)
0.0 0.2 GO:0042975 peroxisome proliferator activated receptor binding(GO:0042975)
0.0 0.1 GO:0008336 gamma-butyrobetaine dioxygenase activity(GO:0008336)
0.0 0.1 GO:0043998 H2A histone acetyltransferase activity(GO:0043998)
0.0 0.3 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.0 0.1 GO:0003989 acetyl-CoA carboxylase activity(GO:0003989)
0.0 0.1 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.0 0.1 GO:1903924 estradiol binding(GO:1903924)
0.0 0.0 GO:0071077 coenzyme A transmembrane transporter activity(GO:0015228) adenosine 3',5'-bisphosphate transmembrane transporter activity(GO:0071077) AMP transmembrane transporter activity(GO:0080122)
0.0 0.2 GO:0047631 ADP-ribose diphosphatase activity(GO:0047631)
0.0 0.1 GO:0004067 asparaginase activity(GO:0004067)
0.0 0.2 GO:0070530 K63-linked polyubiquitin binding(GO:0070530)
0.0 0.1 GO:0047676 arachidonate-CoA ligase activity(GO:0047676)
0.0 0.1 GO:0033192 calcium-dependent protein serine/threonine phosphatase activity(GO:0004723) calmodulin-dependent protein phosphatase activity(GO:0033192)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 PID TOLL ENDOGENOUS PATHWAY Endogenous TLR signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 REACTOME DIGESTION OF DIETARY CARBOHYDRATE Genes involved in Digestion of dietary carbohydrate
0.0 0.1 REACTOME REGULATION OF RHEB GTPASE ACTIVITY BY AMPK Genes involved in Regulation of Rheb GTPase activity by AMPK
0.0 0.2 REACTOME IKK COMPLEX RECRUITMENT MEDIATED BY RIP1 Genes involved in IKK complex recruitment mediated by RIP1
0.0 0.3 REACTOME FATTY ACYL COA BIOSYNTHESIS Genes involved in Fatty Acyl-CoA Biosynthesis