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PRJNA207719: Tissue specific transcriptome profiling

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Results for VDR+nr1i2_vdrb

Z-value: 0.29

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Transcription factors associated with VDR+nr1i2_vdrb

Gene Symbol Gene ID Gene Info
ENSDARG00000029766 nuclear receptor subfamily 1, group I, member 2
ENSDARG00000112923 vitamin D receptor
ENSDARG00000070721 vitamin D receptor b
ENSDARG00000114864 vitamin D receptor b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
vdrbdr11_v1_chr6_-_39005133_390051330.751.4e-01Click!
CABZ01088036.1dr11_v1_chr23_+_45785563_457855630.622.7e-01Click!
nr1i2dr11_v1_chr9_+_9502610_95026100.563.3e-01Click!

Activity profile of VDR+nr1i2_vdrb motif

Sorted Z-values of VDR+nr1i2_vdrb motif

Promoter Log-likelihood Transcript Gene Gene Info
chr11_+_25112269 0.34 ENSDART00000147546
ndrg family member 3a
chr11_+_25111846 0.32 ENSDART00000128705
ENSDART00000190058
ndrg family member 3a
chr14_-_33872092 0.31 ENSDART00000111903
si:ch73-335m24.2
chr17_-_12385308 0.27 ENSDART00000080927
synaptosomal-associated protein, 25b
chr16_+_53685812 0.27 ENSDART00000014098
gamma-glutamylcyclotransferase b
chr14_-_33872616 0.24 ENSDART00000162840
si:ch73-335m24.2
chr9_+_38888025 0.23 ENSDART00000148306
microtubule-associated protein 2
chr1_-_56223913 0.22 ENSDART00000019573
zgc:65894
chr5_+_23624684 0.20 ENSDART00000051539
connexin 27.5
chr5_-_42544522 0.18 ENSDART00000157968

chr23_+_6232895 0.17 ENSDART00000139795
synaptotagmin IIa
chr16_-_22781446 0.16 ENSDART00000144107
lens epithelial protein
chr12_+_16967715 0.15 ENSDART00000138174
solute carrier family 16, member 12b
chr22_-_7168571 0.14 ENSDART00000165549
acid-sensing (proton-gated) ion channel 1b
chr21_-_28235361 0.14 ENSDART00000164458
neurexin 2a
chr20_+_17581881 0.13 ENSDART00000182832
cadherin 2, type 1, N-cadherin (neuronal)
chr1_-_23110740 0.13 ENSDART00000171848
ENSDART00000086797
ENSDART00000189344
ENSDART00000190858
adhesion G protein-coupled receptor L3.1
chr16_+_32995882 0.13 ENSDART00000170157
protease, serine, 35
chr10_+_42691210 0.13 ENSDART00000193813
Rho-related BTB domain containing 2b
chr11_-_18800299 0.13 ENSDART00000156276
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2b
chr10_+_7563755 0.12 ENSDART00000165877
purine-rich element binding protein G
chr22_-_13857729 0.12 ENSDART00000177971
S100 calcium binding protein, beta (neural)
chr24_-_21588914 0.12 ENSDART00000152054
G protein-coupled receptor 12
chr2_+_21309272 0.11 ENSDART00000141322
zinc finger and BTB domain containing 47a
chr9_+_40939336 0.11 ENSDART00000100386
myostatin b
chr3_+_14768364 0.11 ENSDART00000090235
ENSDART00000139001
nuclear factor I/Xb
chr8_-_15991801 0.11 ENSDART00000132005
ATP/GTP binding protein-like 4
chr12_+_30653047 0.11 ENSDART00000148562
thrombospondin 2b
chr3_+_39922602 0.11 ENSDART00000193937
calcium channel, voltage-dependent, T type, alpha 1H subunit a
chr16_-_35329803 0.11 ENSDART00000161729
ENSDART00000157700
ENSDART00000184584
ENSDART00000174713
ENSDART00000162518
protein tyrosine phosphatase, receptor type, U, b
chr10_+_7564106 0.11 ENSDART00000159042
purine-rich element binding protein G
chr10_+_15603082 0.10 ENSDART00000024450
zinc finger, AN1-type domain 5b
chr23_+_16430559 0.10 ENSDART00000112436
neurotensin receptor 1 (high affinity)
chr1_-_53756851 0.10 ENSDART00000122445
v-akt murine thymoma viral oncogene homolog 3b
chr20_+_48100261 0.09 ENSDART00000158604
XK related 5a
chr8_+_50742975 0.09 ENSDART00000155664
ENSDART00000160612
si:ch73-6l19.2
chr7_-_12065668 0.08 ENSDART00000101537
mex-3 RNA binding family member B
chr24_+_38155830 0.08 ENSDART00000152019
si:ch211-234p6.5
chr15_-_33640890 0.08 ENSDART00000167705
StAR-related lipid transfer (START) domain containing 13b
chr7_+_46003449 0.08 ENSDART00000159700
ENSDART00000173625
si:ch211-260e23.9
chr7_-_52842007 0.08 ENSDART00000182710
microtubule-associated protein 1Aa
chr19_-_4010263 0.08 ENSDART00000159605
ENSDART00000165541
MAP7 domain containing 1b
chr12_+_39685485 0.08 ENSDART00000163403

chr15_+_32297441 0.07 ENSDART00000153657
tripartite motif containing 3a
chr12_-_1557286 0.07 ENSDART00000082110
somatostatin receptor 2a
chr19_+_37701450 0.07 ENSDART00000087694
thrombospondin, type I, domain containing 7Aa
chr10_+_428269 0.07 ENSDART00000140715
zinc finger, DHHC-type containing 8a
chr17_+_26981132 0.07 ENSDART00000156672
si:dkey-221l4.11
chr8_-_13210959 0.07 ENSDART00000142224
si:ch73-61d6.3
chr21_+_22878991 0.06 ENSDART00000186399
PCF11 cleavage and polyadenylation factor subunit
chr17_-_15640467 0.06 ENSDART00000014210
fucosyltransferase 9a
chr7_-_24236364 0.06 ENSDART00000010124
solute carrier family 7 (amino acid transporter light chain, L system), member 8a
chr4_-_20511595 0.06 ENSDART00000185806
Ras association (RalGDS/AF-6) domain family (N-terminal) member 8b
chr2_+_23222939 0.06 ENSDART00000026800
kinesin-associated protein 3b
chr13_+_2448251 0.06 ENSDART00000188361
ARFGEF family member 3
chr20_+_37661229 0.06 ENSDART00000138539
androgen-induced 1 (H. sapiens)
chr2_+_30916188 0.06 ENSDART00000137012
myomesin 1a (skelemin)
chr12_-_25217217 0.05 ENSDART00000152931
potassium voltage-gated channel, subfamily G, member 3
chr19_-_20148469 0.05 ENSDART00000134476
si:ch211-155k24.1
chr18_+_36037223 0.05 ENSDART00000144410
transmembrane protein 91
chr25_-_4148719 0.05 ENSDART00000112880
ENSDART00000023278
fatty acid desaturase 2
chr25_+_27923846 0.05 ENSDART00000047007
solute carrier family 13 member 1
chr5_+_38276582 0.05 ENSDART00000158532
guanine nucleotide binding protein (G protein), beta polypeptide 2
chr13_-_40120252 0.05 ENSDART00000157852
cartilage acidic protein 1b
chr16_+_23600041 0.05 ENSDART00000186918
potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
chr13_-_49666615 0.05 ENSDART00000148083
translocase of outer mitochondrial membrane 20
chr14_+_36521553 0.05 ENSDART00000136233
si:dkey-237h12.3
chrM_+_11299 0.04 ENSDART00000093618
NADH dehydrogenase 4, mitochondrial
chr4_-_11737939 0.04 ENSDART00000150299
podocalyxin-like
chr3_+_62356578 0.04 ENSDART00000157030
IQ motif containing K
chr11_+_77526 0.04 ENSDART00000193521

chr12_-_13556536 0.04 ENSDART00000166396

chr24_-_22702017 0.04 ENSDART00000179403
catenin (cadherin-associated protein), delta 2a
chr11_-_18799827 0.04 ENSDART00000185438
ENSDART00000189116
ENSDART00000180504
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2b
chr19_+_177455 0.04 ENSDART00000111580
transmembrane protein 65
chr17_-_37054959 0.04 ENSDART00000151921
DNA (cytosine-5-)-methyltransferase 3 alpha b
chr7_-_38183331 0.04 ENSDART00000149382
ATP-binding cassette, sub-family C (CFTR/MRP), member 12
chr16_+_13822137 0.04 ENSDART00000163251
folliculin
chr20_-_27864964 0.04 ENSDART00000153311
synapse differentiation inducing 1-like
chr9_-_49493305 0.04 ENSDART00000148707
ENSDART00000148561
xin actin binding repeat containing 2b
chr19_-_32888758 0.04 ENSDART00000052080
lysosomal protein transmembrane 4 beta
chr15_+_2421729 0.03 ENSDART00000082294
ENSDART00000156428
hephaestin-like 1a
chr20_+_218886 0.03 ENSDART00000002661
laminin, alpha 4
chr2_+_25278107 0.03 ENSDART00000131977
protein phosphatase 2, regulatory subunit B'', alpha
chr2_+_33051730 0.03 ENSDART00000177902
ENSDART00000187903
ring finger protein 220a
chr7_-_66864756 0.03 ENSDART00000184462
ENSDART00000189424
adenosine monophosphate deaminase 3a
chr10_+_35275965 0.03 ENSDART00000077404
P450 (cytochrome) oxidoreductase a
chr8_-_20380750 0.03 ENSDART00000113910
ADAM metallopeptidase with thrombospondin type 1 motif, 10
chr21_+_38089036 0.03 ENSDART00000147219
Kruppel-like factor 8
chr15_+_2421432 0.03 ENSDART00000193772
hephaestin-like 1a
chr8_-_44015210 0.03 ENSDART00000186879
ENSDART00000188965
ENSDART00000001313
ENSDART00000188902
ENSDART00000185935
ENSDART00000147869
RIMS binding protein 2
RIMS binding protein 2
chr10_-_105100 0.03 ENSDART00000145716
tetratricopeptide repeat domain 3
chr6_+_27624023 0.03 ENSDART00000147789
solute carrier organic anion transporter family, member 2A1
chr14_-_17588345 0.03 ENSDART00000143486
selenoprotein T, 2
chr23_-_9492266 0.03 ENSDART00000091852
suppressor of glucose, autophagy associated 1
chr21_+_22878834 0.03 ENSDART00000065562
PCF11 cleavage and polyadenylation factor subunit
chr14_-_858985 0.03 ENSDART00000148687
ENSDART00000149375
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a
chr1_-_22512063 0.03 ENSDART00000031546
ENSDART00000190987
cholinergic receptor, nicotinic, alpha 6
chr3_+_52473670 0.03 ENSDART00000154310
si:ch211-191c10.3
chr17_+_28533102 0.03 ENSDART00000156218
MAM domain containing glycosylphosphatidylinositol anchor 2a
chr1_+_39865748 0.03 ENSDART00000131954
ENSDART00000130270
interferon regulatory factor 2a
chr5_-_11271209 0.03 ENSDART00000122084
proline dehydrogenase (oxidase) 1b
chr20_+_20731052 0.03 ENSDART00000047662
protein phosphatase 1, regulatory subunit 13Bb
chr20_+_34374735 0.03 ENSDART00000144090
si:dkeyp-11g8.3
chr9_-_7378566 0.03 ENSDART00000144003
solute carrier family 23, member 3
chr12_+_46608361 0.03 ENSDART00000189164
fatty acid desaturase 6
chr25_+_12494079 0.03 ENSDART00000163508
microtubule-associated protein 1 light chain 3 beta
chr4_+_9450415 0.03 ENSDART00000189690
transmembrane and tetratricopeptide repeat containing 1
chr1_+_23783349 0.02 ENSDART00000007531
slit homolog 2 (Drosophila)
chr15_+_24756860 0.02 ENSDART00000156424
ENSDART00000078035
carboxypeptidase D, a
chr25_+_23591990 0.02 ENSDART00000151938
ENSDART00000089199
carnitine palmitoyltransferase 1Ab (liver)
chr21_-_25756119 0.02 ENSDART00000002341
claudin c
chr19_+_29798064 0.02 ENSDART00000167803
ENSDART00000051804
MARCKS-like 1b
chr3_-_34753605 0.02 ENSDART00000000160
thyroid hormone receptor alpha a
chr24_-_21498802 0.02 ENSDART00000181235
ENSDART00000153695
ATPase phospholipid transporting 8A2
chr9_+_38524881 0.02 ENSDART00000131846
oxysterol binding protein-like 11
chr5_+_70271799 0.02 ENSDART00000101316
zinc finger protein 618
chr13_-_31866276 0.02 ENSDART00000140164
synaptotagmin XIVa
chr20_-_1454131 0.02 ENSDART00000138059
protein tyrosine phosphatase, receptor type, K
chr11_-_25324534 0.02 ENSDART00000158598
si:ch211-232b12.5
chr20_-_3086515 0.02 ENSDART00000046641
mitogen-activated protein kinase kinase kinase 5
chr15_+_32642878 0.02 ENSDART00000159932
transient receptor potential cation channel, subfamily C, member 4b
chr12_-_36070473 0.02 ENSDART00000165720
G protein-coupled receptor 142
chr21_-_15046065 0.02 ENSDART00000178507
matrix metallopeptidase 17a
chr24_+_2495197 0.02 ENSDART00000146887
coagulation factor XIII, A1 polypeptide a, tandem duplicate 1
chr11_-_25734417 0.02 ENSDART00000103570
bromodomain and PHD finger containing, 3a
chr15_-_34468599 0.02 ENSDART00000192984
mesenchyme homeobox 2a
chr8_+_16990120 0.02 ENSDART00000018934
phosphodiesterase 4D, cAMP-specific
chr9_+_15837398 0.02 ENSDART00000141063
si:dkey-103d23.5
chr17_-_45155181 0.02 ENSDART00000185274
transmembrane p24 trafficking protein 8
chr25_+_10762016 0.02 ENSDART00000131231
adaptor-related protein complex 3, sigma 2 subunit
chr25_-_24248000 0.02 ENSDART00000073527
SPT2 chromatin protein domain containing 1
chr14_-_25309058 0.02 ENSDART00000159569
5-hydroxytryptamine receptor 4
chr14_+_9583588 0.02 ENSDART00000164101
transmembrane protein 129, E3 ubiquitin protein ligase
chr23_+_38953545 0.02 ENSDART00000184621
ATPase phospholipid transporting 9A (putative)
chr24_-_1021318 0.02 ENSDART00000181403
v-ral simian leukemia viral oncogene homolog Aa (ras related)
chr4_+_29967255 0.02 ENSDART00000150383
zinc finger protein 1128
chr4_-_68868700 0.02 ENSDART00000187985
si:dkey-264f17.5
chr14_-_32486757 0.02 ENSDART00000148830
MCF.2 cell line derived transforming sequence a
chr2_-_21167652 0.02 ENSDART00000185792
bmi1 polycomb ring finger oncogene 1b
chr1_+_54901028 0.02 ENSDART00000137352
zinc finger, FYVE domain containing 27
chr21_+_5589923 0.02 ENSDART00000160885
starch binding domain 1
chr1_+_41609676 0.02 ENSDART00000183675
mannosyl-oligosaccharide glucosidase
chr14_+_36521005 0.02 ENSDART00000192286
si:dkey-237h12.3
chr8_-_43689324 0.02 ENSDART00000159904
E1A binding protein p400
chr12_+_18543783 0.02 ENSDART00000148326
ENSDART00000134530
MTOR associated protein, LST8 homolog (S. cerevisiae)
chr4_-_18416566 0.01 ENSDART00000033717
CASP2 and RIPK1 domain containing adaptor with death domain
chr21_+_30470809 0.01 ENSDART00000171648
ENSDART00000126678
ENSDART00000003335
ENSDART00000133478
ENSDART00000140811
ENSDART00000147375
sorting nexin 12
chr3_-_1859198 0.01 ENSDART00000121870
MICAL like 1b, duplicate 2
chr19_-_9776075 0.01 ENSDART00000140332
si:dkey-14o18.1
chr9_-_6208067 0.01 ENSDART00000032368
teleost multiple tissue opsin 2b
chr23_+_25308018 0.01 ENSDART00000140463
extended synaptotagmin-like protein 1a
chr4_-_2975461 0.01 ENSDART00000150794
pleckstrin homology domain containing, family A member 5
chr3_-_34656745 0.01 ENSDART00000144824
zinc finger-like gene 1
chr1_-_30689004 0.01 ENSDART00000018827
dachshund c
chr14_-_24101897 0.01 ENSDART00000143695
cytoplasmic polyadenylation element binding protein 4a
chr7_+_24069421 0.01 ENSDART00000034218
apoptotic chromatin condensation inducer 1b
chr6_+_59840360 0.01 ENSDART00000154647
DEAD (Asp-Glu-Ala-Asp) box helicase 3b
chr11_-_26040594 0.01 ENSDART00000144115
kazrin, periplakin interacting protein b
chr17_-_31058664 0.01 ENSDART00000126414
echinoderm microtubule associated protein like 1
chr7_+_65673885 0.01 ENSDART00000169182
parvin, alpha b
chr17_+_15674052 0.01 ENSDART00000156726
BTB and CNC homology 1, basic leucine zipper transcription factor 2a
chr17_+_6469419 0.01 ENSDART00000191729
si:dkey-36g24.3
chr15_-_38361787 0.01 ENSDART00000155758
transient receptor potential cation channel, subfamily C, member 2a
chr18_+_32916351 0.01 ENSDART00000170387
ENSDART00000161553
olfactory receptor C family, g2
chr5_-_32158198 0.01 ENSDART00000187215
ENSDART00000137503
IL-6 subfamily cytokine M17
chr16_-_45001842 0.01 ENSDART00000037797
sulfotransferase family 2, cytosolic sulfotransferase 3
chr25_+_4541211 0.01 ENSDART00000129978
patatin-like phospholipase domain containing 2
chr9_+_28140089 0.01 ENSDART00000046880
pleckstrin homology domain containing, family M, member 3
chr15_+_20543770 0.01 ENSDART00000092357
small G protein signaling modulator 2
chr13_+_31070181 0.01 ENSDART00000110560
ENSDART00000146088
si:ch211-223a10.1
chr17_+_25563979 0.01 ENSDART00000045615
ENSDART00000183162
glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
chr10_+_23548674 0.01 ENSDART00000079686
zmp:0000001103
chr20_+_20731633 0.01 ENSDART00000191952
ENSDART00000165224
protein phosphatase 1, regulatory subunit 13Bb
chr22_-_20733822 0.01 ENSDART00000133780
si:dkey-3k20.1
chr16_-_22747125 0.01 ENSDART00000179865
toll-like receptor 19
chr5_+_40224938 0.00 ENSDART00000142897
si:dkey-193c22.2
chr5_-_27867657 0.00 ENSDART00000112495
transcriptional and immune response regulator a
chr19_-_10043142 0.00 ENSDART00000193016
glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a
chr15_-_25198107 0.00 ENSDART00000159793
MAX network transcriptional repressor a
chr2_-_17392799 0.00 ENSDART00000136470
ENSDART00000141188
ST3 beta-galactoside alpha-2,3-sialyltransferase 3b
chr19_-_45985989 0.00 ENSDART00000165897
si:ch211-153f2.3
chr5_+_69716458 0.00 ENSDART00000159594
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
chr8_+_45381298 0.00 ENSDART00000149451
ENSDART00000110364
TELO2 interacting protein 2
chr22_+_39058269 0.00 ENSDART00000113362
inositol hexakisphosphate kinase 1
chr3_+_46425262 0.00 ENSDART00000153690
sc:d0202
chr16_+_5901835 0.00 ENSDART00000060519
unc-51 like kinase 4
chr12_+_18542954 0.00 ENSDART00000178845
ENSDART00000185149
ENSDART00000012743
MTOR associated protein, LST8 homolog (S. cerevisiae)
chr12_+_48581588 0.00 ENSDART00000114996

chr15_+_1653779 0.00 ENSDART00000021299
NMD3 ribosome export adaptor
chr24_+_17345521 0.00 ENSDART00000024722
ENSDART00000154250
enhancer of zeste 2 polycomb repressive complex 2 subunit
chr10_-_40964739 0.00 ENSDART00000076359
neuropeptide FF receptor 1 like 1
chr22_+_9761930 0.00 ENSDART00000181107

chr2_-_22575851 0.00 ENSDART00000182932

Network of associatons between targets according to the STRING database.

First level regulatory network of VDR+nr1i2_vdrb

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0021577 hindbrain structural organization(GO:0021577) dorsal fin morphogenesis(GO:0035142) cell motility involved in somitogenic axis elongation(GO:0090247) cell migration involved in somitogenic axis elongation(GO:0090248)
0.0 0.1 GO:0045843 negative regulation of striated muscle tissue development(GO:0045843) negative regulation of muscle tissue development(GO:1901862)
0.0 0.1 GO:0070207 protein homotrimerization(GO:0070207)
0.0 0.3 GO:0045162 clustering of voltage-gated sodium channels(GO:0045162)
0.0 0.0 GO:0033631 cell-cell adhesion mediated by integrin(GO:0033631) regulation of cell-cell adhesion mediated by integrin(GO:0033632)
0.0 0.1 GO:0006369 termination of RNA polymerase II transcription(GO:0006369)
0.0 0.0 GO:1903779 regulation of cardiac conduction(GO:1903779)
0.0 0.0 GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient(GO:0015988) electron transport coupled proton transport(GO:0015990)
0.0 0.2 GO:0006003 fructose 2,6-bisphosphate metabolic process(GO:0006003)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032)
0.0 0.2 GO:0042584 chromaffin granule membrane(GO:0042584)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0003839 gamma-glutamylcyclotransferase activity(GO:0003839)
0.0 0.2 GO:0032422 purine-rich negative regulatory element binding(GO:0032422)
0.0 0.1 GO:0044548 S100 protein binding(GO:0044548)
0.0 0.1 GO:0044736 acid-sensing ion channel activity(GO:0044736)
0.0 0.1 GO:0008332 low voltage-gated calcium channel activity(GO:0008332)
0.0 0.2 GO:0072349 modified amino acid transmembrane transporter activity(GO:0072349)
0.0 0.2 GO:0003873 6-phosphofructo-2-kinase activity(GO:0003873)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME ADVANCED GLYCOSYLATION ENDPRODUCT RECEPTOR SIGNALING Genes involved in Advanced glycosylation endproduct receptor signaling