PRJNA207719: Tissue specific transcriptome profiling

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
hoxb13a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000056015	homeobox B13a

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr20_+_40150612 Show fit	0.74	ENSDART00000143680 ENSDART00000109681 ENSDART00000101041 ENSDART00000121818	trdn Links NCBI UniProt ZFIN ENSEMBL Google Show fit	triadin
chr11_-_18253111 Show fit	0.66	ENSDART00000125984	mustn1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	musculoskeletal, embryonic nuclear protein 1b
chr16_+_14002944 Show fit	0.40	ENSDART00000059926	si:dkey-85k15.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-85k15.7
chr11_-_30611814 Show fit	0.39	ENSDART00000089803	slc8a1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 8 (sodium/calcium exchanger), member 1a
chr11_+_24314148 Show fit	0.38	ENSDART00000171491	rem1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RAS (RAD and GEM)-like GTP-binding 1
chr17_+_15788100 Show fit	0.30	ENSDART00000027667	rragd Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ras-related GTP binding D
chr1_-_44940830 Show fit	0.24	ENSDART00000097500 ENSDART00000134464 ENSDART00000137216	tmem176 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 176
chr7_-_30367650 Show fit	0.23	ENSDART00000075519	aldh1a2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	aldehyde dehydrogenase 1 family, member A2
chr1_+_44941031 Show fit	0.23	ENSDART00000141145	si:dkey-9i23.16 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-9i23.16
chr12_+_27704015 Show fit	0.23	ENSDART00000153256	cacna1g Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium channel, voltage-dependent, T type, alpha 1G subunit
chr16_-_563235 Show fit	0.21	ENSDART00000016303	irx2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	iroquois homeobox 2a
chr20_-_27733683 Show fit	0.19	ENSDART00000103317 ENSDART00000138139	zgc:153157 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:153157
chr12_+_41697664 Show fit	0.19	ENSDART00000162302	bnip3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	BCL2 interacting protein 3
chr1_-_1627487 Show fit	0.19	ENSDART00000166094	clic6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chloride intracellular channel 6
chr17_-_15382704 Show fit	0.15	ENSDART00000005313	zgc:85722 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:85722
chr5_+_27434601 Show fit	0.14	ENSDART00000064701	loxl2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysyl oxidase-like 2b
chr14_-_24761132 Show fit	0.14	ENSDART00000146299	slit3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	slit homolog 3 (Drosophila)
chr18_+_44649804 Show fit	0.13	ENSDART00000059063	ehd2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	EH-domain containing 2b
chr20_-_52338782 Show fit	0.12	ENSDART00000109735 ENSDART00000132941	si:ch1073-287p18.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch1073-287p18.1
chr14_+_23184517 Show fit	0.11	ENSDART00000181410	enox2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ecto-NOX disulfide-thiol exchanger 2
chr23_-_19682971 Show fit	0.11	ENSDART00000048891	zgc:193598 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:193598
chr9_+_2333550 Show fit	0.11	ENSDART00000016417	atp5mc3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATP synthase membrane subunit c locus 3a
chr9_-_14683574 Show fit	0.11	ENSDART00000144022	pard3bb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	par-3 family cell polarity regulator beta b
chr24_+_1042594 Show fit	0.10	ENSDART00000109117	si:dkey-192l18.9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-192l18.9
chr6_-_6258451 Show fit	0.10	ENSDART00000081966 ENSDART00000125918	rtn4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	reticulon 4a
chr7_-_20865005 Show fit	0.09	ENSDART00000190752	fis1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fission, mitochondrial 1
chr1_+_52481332 Show fit	0.09	ENSDART00000074231	cldnd1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	claudin domain containing 1b
chr6_-_12644563 Show fit	0.09	ENSDART00000153797	dock9b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dedicator of cytokinesis 9b
chr20_+_29743904 Show fit	0.09	ENSDART00000146366 ENSDART00000153154	kidins220b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kinase D-interacting substrate 220b
chr17_-_23412705 Show fit	0.09	ENSDART00000126995	si:ch211-149k12.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-149k12.3
chr3_+_46271911 Show fit	0.08	ENSDART00000186557 ENSDART00000113531	mkl2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MKL/myocardin-like 2b
chr5_-_46980651 Show fit	0.08	ENSDART00000181022 ENSDART00000168038	edil3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	EGF-like repeats and discoidin I-like domains 3a
chr16_-_41717063 Show fit	0.08	ENSDART00000084610	cep85 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	centrosomal protein 85
chr21_-_37733287 Show fit	0.07	ENSDART00000157826	mpp1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane protein, palmitoylated 1
chr21_-_27273147 Show fit	0.07	ENSDART00000143239	mark2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MAP/microtubule affinity-regulating kinase 2a
chr2_-_31661609 Show fit	0.07	ENSDART00000144383	si:ch211-106h4.9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-106h4.9
chr7_-_56831621 Show fit	0.07	ENSDART00000182912	senp8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SUMO/sentrin peptidase family member, NEDD8 specific
chr15_-_28596507 Show fit	0.07	ENSDART00000156800	si:ch211-225b7.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-225b7.5
chr19_-_17526735 Show fit	0.07	ENSDART00000189391	thrb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	thyroid hormone receptor beta
chr21_-_27272657 Show fit	0.07	ENSDART00000040754 ENSDART00000175009	mark2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MAP/microtubule affinity-regulating kinase 2a
chr7_-_31781339 Show fit	0.06	ENSDART00000142666	nap1l4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nucleosome assembly protein 1-like 4b
chr11_-_16394971 Show fit	0.06	ENSDART00000180981 ENSDART00000179925	lrig1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leucine-rich repeats and immunoglobulin-like domains 1
chr15_+_11381532 Show fit	0.06	ENSDART00000124172	si:ch73-321d9.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-321d9.2
chr23_-_24226533 Show fit	0.06	ENSDART00000109134	plekhm2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pleckstrin homology domain containing, family M (with RUN domain) member 2
chr22_+_11857356 Show fit	0.05	ENSDART00000179540	mras Links NCBI UniProt ZFIN ENSEMBL Google Show fit	muscle RAS oncogene homolog
chr13_-_49802194 Show fit	0.05	ENSDART00000148722	b3galnt2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	beta-1,3-N-acetylgalactosaminyltransferase 2
chr3_+_32443395 Show fit	0.05	ENSDART00000188447	prr12b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proline rich 12b
chr7_+_33130639 Show fit	0.05	ENSDART00000142450 ENSDART00000173967 ENSDART00000173832	zgc:153219 Links NCBI UniProt ZFIN ENSEMBL Google Show fit si:ch211-194p6.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:153219 si:ch211-194p6.7
chr16_+_39485608 Show fit	0.05	ENSDART00000188085	CR855318.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr17_-_11439815 Show fit	0.04	ENSDART00000130105	psma3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proteasome subunit alpha 3
chr2_-_4070850 Show fit	0.04	ENSDART00000159990	yme1l1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	YME1-like 1b
chr5_+_30520249 Show fit	0.04	ENSDART00000013431	hmbsa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hydroxymethylbilane synthase a
chr16_-_27628994 Show fit	0.04	ENSDART00000157407	nacad Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NAC alpha domain containing
chr25_-_35599887 Show fit	0.04	ENSDART00000153827	clpxb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	caseinolytic mitochondrial matrix peptidase chaperone subunit b
chr25_+_25453221 Show fit	0.04	ENSDART00000176822	rassf7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7a
chr6_+_35362225 Show fit	0.04	ENSDART00000133783 ENSDART00000102483	rgs4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	regulator of G protein signaling 4
chr7_-_40082053 Show fit	0.04	ENSDART00000083719 ENSDART00000173687	shrprbck1r Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sharpin and rbck1 related
chr1_-_19079957 Show fit	0.04	ENSDART00000141795	phox2ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	paired-like homeobox 2ba
chr8_+_50953776 Show fit	0.04	ENSDART00000013870	zgc:56596 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:56596
chr22_+_15624371 Show fit	0.03	ENSDART00000124868	lpl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lipoprotein lipase
chr12_-_3705862 Show fit	0.03	ENSDART00000193864 ENSDART00000185857	CABZ01069040.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr23_-_7799184 Show fit	0.03	ENSDART00000190946 ENSDART00000165427	myt1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myelin transcription factor 1b
chr24_-_20808283 Show fit	0.03	ENSDART00000143759	vipr1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vasoactive intestinal peptide receptor 1b
chr17_-_45150763 Show fit	0.03	ENSDART00000155043 ENSDART00000156786 ENSDART00000191147	tmed8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane p24 trafficking protein 8
chr17_+_31820401 Show fit	0.03	ENSDART00000192607 ENSDART00000157490	eef1akmt2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	EEF1A lysine methyltransferase 2
chr24_-_36238054 Show fit	0.03	ENSDART00000155725	tmem241 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 241
chr6_+_45300746 Show fit	0.02	ENSDART00000159176	BX942846.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr19_-_42557416 Show fit	0.02	ENSDART00000163217 ENSDART00000128278 ENSDART00000162304 ENSDART00000166556	si:dkey-267n13.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-267n13.1
chr4_-_4387012 Show fit	0.02	ENSDART00000191836	CU468826.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Danio rerio U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1-like (LOC100331497), mRNA.
chr19_+_42071033 Show fit	0.02	ENSDART00000169067 ENSDART00000183436	nfyc Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear transcription factor Y, gamma
chr7_-_8324927 Show fit	0.02	ENSDART00000102535	f13a1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	coagulation factor XIII, A1 polypeptide b
chr25_+_19106574 Show fit	0.02	ENSDART00000067332	rlbp1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	retinaldehyde binding protein 1b
chr19_-_2582858 Show fit	0.02	ENSDART00000113829	cdca7b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cell division cycle associated 7b
chr5_-_61970674 Show fit	0.01	ENSDART00000143161	znf541 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 541
chr22_+_2228919 Show fit	0.01	ENSDART00000133475	znf1161 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 1161
chr15_-_17406056 Show fit	0.01	ENSDART00000146735	tubd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tubulin, delta 1
chr5_-_26181863 Show fit	0.00	ENSDART00000098500	ccdc125 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	coiled-coil domain containing 125
chr3_-_31069776 Show fit	0.00	ENSDART00000167462	elob Links NCBI UniProt ZFIN ENSEMBL Google Show fit	elongin B
chr1_+_19515228 Show fit	0.00	ENSDART00000103091	clrn2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	clarin 2
chr3_+_60044780 Show fit	0.00	ENSDART00000080437	zgc:113030 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:113030
chr16_+_21738194 Show fit	0.00	ENSDART00000163688	FP085428.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Danio rerio si:ch211-154o6.4 (si:ch211-154o6.4), mRNA.
chr25_+_28823952 Show fit	0.00	ENSDART00000067072	nfybb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear transcription factor Y, beta b
chr10_-_21953643 Show fit	0.00	ENSDART00000188921 ENSDART00000193569	FO744833.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.7	GO:0035988	chondrocyte proliferation(GO:0035988)
0.1	0.4	GO:1901842	regulation of high voltage-gated calcium channel activity(GO:1901841) negative regulation of high voltage-gated calcium channel activity(GO:1901842)
0.1	0.2	GO:0061113	pancreas morphogenesis(GO:0061113)
0.0	0.1	GO:1902455	negative regulation of stem cell population maintenance(GO:1902455)
0.0	0.1	GO:0051660	establishment of centrosome localization(GO:0051660)
0.0	0.1	GO:0007624	ultradian rhythm(GO:0007624)
0.0	0.2	GO:0097345	mitochondrial outer membrane permeabilization(GO:0097345)
0.0	0.1	GO:0060231	mesenchymal to epithelial transition(GO:0060231)
0.0	0.4	GO:1990035	calcium ion import across plasma membrane(GO:0098703) calcium ion import into cell(GO:1990035)
0.0	0.1	GO:0060220	retinal cone cell fate determination(GO:0042671) eye photoreceptor cell fate commitment(GO:0042706) photoreceptor cell fate determination(GO:0043703) retinal cone cell fate commitment(GO:0046551) photoreceptor cell fate commitment(GO:0046552) camera-type eye photoreceptor cell fate commitment(GO:0060220)
0.0	0.1	GO:0016559	peroxisome fission(GO:0016559) mitochondrial fragmentation involved in apoptotic process(GO:0043653)
0.0	0.2	GO:0086010	membrane depolarization during action potential(GO:0086010)
0.0	0.2	GO:0039014	pronephric nephron tubule epithelial cell differentiation(GO:0035778) cell differentiation involved in pronephros development(GO:0039014)
0.0	0.3	GO:0032008	positive regulation of TOR signaling(GO:0032008)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0034448	EGO complex(GO:0034448) Gtr1-Gtr2 GTPase complex(GO:1990131)
0.0	0.7	GO:0033017	sarcoplasmic reticulum membrane(GO:0033017)
0.0	0.1	GO:0031231	integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0008332	low voltage-gated calcium channel activity(GO:0008332)
0.0	0.4	GO:0005432	calcium:sodium antiporter activity(GO:0005432)
0.0	0.6	GO:0005246	calcium channel regulator activity(GO:0005246)
0.0	0.1	GO:0070324	thyroid hormone binding(GO:0070324)
0.0	0.2	GO:0004029	aldehyde dehydrogenase (NAD) activity(GO:0004029)
0.0	0.0	GO:0034185	apolipoprotein binding(GO:0034185)