PRJNA207719: Tissue specific transcriptome profiling

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
hoxb7a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000056030	homeobox B7a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hoxb7a	dr11_v1_chr3_+_23691847_23691847	0.02	9.7e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_+_69019851 Show fit	0.40	ENSDART00000162891	CABZ01057488.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr2_-_1486023 Show fit	0.33	ENSDART00000113774	si:ch211-188c16.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-188c16.1
chr10_-_21362071 Show fit	0.29	ENSDART00000125167	avd Links NCBI UniProt ZFIN ENSEMBL Google Show fit	avidin
chr13_-_10945288 Show fit	0.26	ENSDART00000114315 ENSDART00000164667 ENSDART00000159482	abcg8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATP-binding cassette, sub-family G (WHITE), member 8
chr10_-_21362320 Show fit	0.24	ENSDART00000189789	avd Links NCBI UniProt ZFIN ENSEMBL Google Show fit	avidin
chr7_+_21272833 Show fit	0.20	ENSDART00000052942	serpinh2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	serine (or cysteine) peptidase inhibitor, clade H, member 2
chr13_+_10945337 Show fit	0.20	ENSDART00000091845	abcg5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATP-binding cassette, sub-family G (WHITE), member 5
chr18_+_14619544 Show fit	0.19	ENSDART00000010821	utp4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	UTP4, small subunit processome component
chr24_+_16985181 Show fit	0.19	ENSDART00000135580	eif2s3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eukaryotic translation initiation factor 2, subunit 3 gamma
chr12_-_35830625 Show fit	0.18	ENSDART00000180028	CU459056.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr4_-_9891874 Show fit	0.18	ENSDART00000067193	adm2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adrenomedullin 2a
chr22_-_22301672 Show fit	0.18	ENSDART00000111711	chaf1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromatin assembly factor 1, subunit A (p150)
chr4_-_13548806 Show fit	0.17	ENSDART00000067155	il22 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	interleukin 22
chr6_+_25257728 Show fit	0.17	ENSDART00000162581	kyat3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kynurenine aminotransferase 3
chr10_-_31015535 Show fit	0.17	ENSDART00000146116	panx3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pannexin 3
chr22_-_27296889 Show fit	0.16	ENSDART00000155724	si:dkey-208m12.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-208m12.3
chr18_+_45781516 Show fit	0.16	ENSDART00000168840	rpl35a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ribosomal protein L35a
chr25_-_35599887 Show fit	0.16	ENSDART00000153827	clpxb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	caseinolytic mitochondrial matrix peptidase chaperone subunit b
chr24_-_38657683 Show fit	0.16	ENSDART00000154843	si:ch1073-164k15.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch1073-164k15.3
chr18_+_45781115 Show fit	0.15	ENSDART00000151699 ENSDART00000179887	rpl35a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ribosomal protein L35a
chr9_+_24008879 Show fit	0.15	ENSDART00000190419 ENSDART00000191843 ENSDART00000148226	mlphb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	melanophilin b
chr12_-_4243268 Show fit	0.15	ENSDART00000131275	zgc:92313 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:92313
chr4_+_16715267 Show fit	0.14	ENSDART00000143849	pkp2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	plakophilin 2
chr10_-_13343831 Show fit	0.14	ENSDART00000135941	il11ra Links NCBI UniProt ZFIN ENSEMBL Google Show fit	interleukin 11 receptor, alpha
chr7_+_7696665 Show fit	0.12	ENSDART00000091099	ino80b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	INO80 complex subunit B
chr9_+_1139378 Show fit	0.12	ENSDART00000170033	slc15a1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 15 (oligopeptide transporter), member 1a
chr6_-_43677125 Show fit	0.12	ENSDART00000150128	foxp1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	forkhead box P1b
chr5_-_30620625 Show fit	0.12	ENSDART00000098273	tcnl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transcobalamin like
chr8_+_25034544 Show fit	0.12	ENSDART00000123300	ngrn Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neugrin, neurite outgrowth associated
chr24_+_7800486 Show fit	0.12	ENSDART00000145504	ptprh Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein tyrosine phosphatase, receptor type, h
chr25_+_13620555 Show fit	0.11	ENSDART00000163642	si:ch211-172l8.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-172l8.4
chr22_-_22301929 Show fit	0.11	ENSDART00000142027	chaf1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromatin assembly factor 1, subunit A (p150)
chr5_+_71802014 Show fit	0.11	ENSDART00000124939 ENSDART00000097164	LHX3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LIM homeobox 3
chr23_+_28809002 Show fit	0.11	ENSDART00000134121 ENSDART00000183661	pex14 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	peroxisomal biogenesis factor 14
chr5_-_16218777 Show fit	0.11	ENSDART00000141698	kremen1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kringle containing transmembrane protein 1
chr3_-_36602379 Show fit	0.10	ENSDART00000161501 ENSDART00000162396	rrn3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RRN3 homolog, RNA polymerase I transcription factor
chr3_-_50443607 Show fit	0.10	ENSDART00000074036	rcvrna Links NCBI UniProt ZFIN ENSEMBL Google Show fit	recoverin a
chr12_+_16168342 Show fit	0.10	ENSDART00000079326 ENSDART00000170024	lrp2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	low density lipoprotein receptor-related protein 2b
chr5_+_34623107 Show fit	0.10	ENSDART00000184126	enc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ectodermal-neural cortex 1
chr3_-_36602069 Show fit	0.10	ENSDART00000165414	rrn3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RRN3 homolog, RNA polymerase I transcription factor
chr17_+_20589553 Show fit	0.10	ENSDART00000154447	si:ch73-288o11.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-288o11.4
chr13_-_5252559 Show fit	0.09	ENSDART00000181652	si:dkey-78p8.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-78p8.1
chr20_-_45812144 Show fit	0.09	ENSDART00000147897 ENSDART00000147637	fermt1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fermitin family member 1
chr6_+_7414215 Show fit	0.09	ENSDART00000049339	sox21a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SRY (sex determining region Y)-box 21a
chr17_+_51682429 Show fit	0.09	ENSDART00000004379	nol10 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nucleolar protein 10
chr12_+_20641471 Show fit	0.08	ENSDART00000133654	calcoco2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium binding and coiled-coil domain 2
chr12_+_48803098 Show fit	0.08	ENSDART00000074768	ppifb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	peptidylprolyl isomerase Fb
chr22_-_19102256 Show fit	0.08	ENSDART00000171866 ENSDART00000166295	polrmt Links NCBI UniProt ZFIN ENSEMBL Google Show fit	polymerase (RNA) mitochondrial (DNA directed)
chr20_+_15600167 Show fit	0.08	ENSDART00000171991	faslg Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Fas ligand (TNF superfamily, member 6)
chr10_-_26744131 Show fit	0.08	ENSDART00000020096 ENSDART00000162710 ENSDART00000179853	fgf13b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fibroblast growth factor 13b
chr17_+_30369396 Show fit	0.08	ENSDART00000076611	greb1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	growth regulation by estrogen in breast cancer 1
chr2_-_36500347 Show fit	0.07	ENSDART00000110528	BX901889.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr24_-_36680261 Show fit	0.07	ENSDART00000059507	ccr10 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chemokine (C-C motif) receptor 10
chr23_+_39462208 Show fit	0.07	ENSDART00000136707	mical1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	microtubule associated monooxygenase, calponin and LIM domain containing 1
chr8_-_13046089 Show fit	0.07	ENSDART00000137784	si:dkey-208b23.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-208b23.5
chr4_-_63165848 Show fit	0.07	ENSDART00000183789	CR450780.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr23_+_39461989 Show fit	0.07	ENSDART00000184761	mical1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	microtubule associated monooxygenase, calponin and LIM domain containing 1
chr4_-_2545310 Show fit	0.07	ENSDART00000150619 ENSDART00000140760	e2f7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	E2F transcription factor 7
chr8_-_12867434 Show fit	0.06	ENSDART00000081657	slc2a6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 2 (facilitated glucose transporter), member 6
chr24_+_13316737 Show fit	0.06	ENSDART00000191658	SBSPON Links NCBI UniProt ZFIN ENSEMBL Google Show fit	somatomedin B and thrombospondin type 1 domain containing
chr2_+_35728033 Show fit	0.06	ENSDART00000002094	ankrd45 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin repeat domain 45
chr18_-_33080454 Show fit	0.06	ENSDART00000191907	v2ra18 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vomeronasal 2 receptor, a18
chr7_+_7048245 Show fit	0.06	ENSDART00000001649	actn3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	actinin alpha 3b
chr23_+_4709607 Show fit	0.06	ENSDART00000166503 ENSDART00000158752 ENSDART00000163860 ENSDART00000172739	raf1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit raf1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Raf-1 proto-oncogene, serine/threonine kinase a Raf-1 proto-oncogene, serine/threonine kinase a
chr7_-_33960170 Show fit	0.05	ENSDART00000180766	skor1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SKI family transcriptional corepressor 1a
chr14_+_16287968 Show fit	0.05	ENSDART00000106593	prpf19 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pre-mRNA processing factor 19
chr15_-_40246396 Show fit	0.05	ENSDART00000063777	kcnj13 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	potassium inwardly-rectifying channel, subfamily J, member 13
chr4_+_70151160 Show fit	0.05	ENSDART00000111816	si:dkey-3h2.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-3h2.4
chr15_+_857148 Show fit	0.05	ENSDART00000156949	si:dkey-7i4.13 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-7i4.13
chr6_+_24398907 Show fit	0.05	ENSDART00000167482	tgfbr3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transforming growth factor, beta receptor III
chr4_+_77971104 Show fit	0.05	ENSDART00000188609	zgc:113921 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:113921
chr8_-_12867128 Show fit	0.05	ENSDART00000142201	slc2a6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 2 (facilitated glucose transporter), member 6
chr5_+_56023186 Show fit	0.04	ENSDART00000156230	fzd9a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	frizzled class receptor 9a
chr6_+_21992820 Show fit	0.04	ENSDART00000147507	thumpd3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	THUMP domain containing 3
chr20_-_9095105 Show fit	0.04	ENSDART00000140792	oma1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	OMA1 zinc metallopeptidase
chr17_+_25481466 Show fit	0.04	ENSDART00000139451	aim1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	crystallin beta-gamma domain containing 1a
chr2_-_7246848 Show fit	0.04	ENSDART00000146434	zgc:153115 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:153115
chr17_+_16090436 Show fit	0.03	ENSDART00000136059 ENSDART00000138734	znf395a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 395a
chr11_-_2838699 Show fit	0.03	ENSDART00000066189	lhfpl5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LHFPL tetraspan subfamily member 5a
chr12_+_20641102 Show fit	0.03	ENSDART00000152964	calcoco2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium binding and coiled-coil domain 2
chr11_+_705727 Show fit	0.03	ENSDART00000165366	timp4.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TIMP metallopeptidase inhibitor 4, tandem duplicate 2
chr21_+_8276989 Show fit	0.02	ENSDART00000028265	nr5a1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear receptor subfamily 5, group A, member 1b
chr23_-_25779995 Show fit	0.02	ENSDART00000110670	si:dkey-21c19.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-21c19.3
chr18_+_2228737 Show fit	0.02	ENSDART00000165301	rab27a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RAB27A, member RAS oncogene family
chr10_+_11261576 Show fit	0.02	ENSDART00000155333	hsdl2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hydroxysteroid dehydrogenase like 2
chr20_-_46128590 Show fit	0.02	ENSDART00000123744	taar1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	trace amine associated receptor 1b
chr2_+_15048410 Show fit	0.01	ENSDART00000058484	cnn3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calponin 3, acidic b
chr12_+_47698356 Show fit	0.01	ENSDART00000112010	lzts2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leucine zipper, putative tumor suppressor 2b
chr6_+_9898683 Show fit	0.01	ENSDART00000005573	tmem237b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 237b

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0045903	positive regulation of translational fidelity(GO:0045903)
0.0	0.1	GO:0019417	sulfur oxidation(GO:0019417)
0.0	0.2	GO:0006361	transcription initiation from RNA polymerase I promoter(GO:0006361)
0.0	0.2	GO:0032732	positive regulation of interleukin-1 production(GO:0032732)
0.0	0.1	GO:1904158	axonemal central apparatus assembly(GO:1904158)
0.0	0.1	GO:0048903	anterior lateral line neuromast hair cell differentiation(GO:0048903)
0.0	0.1	GO:0045110	intermediate filament bundle assembly(GO:0045110)
0.0	0.1	GO:2000001	regulation of DNA damage checkpoint(GO:2000001)
0.0	0.5	GO:0055092	cholesterol homeostasis(GO:0042632) sterol homeostasis(GO:0055092)
0.0	0.1	GO:0043518	negative regulation of DNA damage response, signal transduction by p53 class mediator(GO:0043518)
0.0	0.1	GO:0006857	oligopeptide transport(GO:0006857)
0.0	0.1	GO:0051876	pigment granule dispersal(GO:0051876)
0.0	0.1	GO:0032875	regulation of DNA endoreduplication(GO:0032875) positive regulation of DNA endoreduplication(GO:0032877) DNA endoreduplication(GO:0042023)
0.0	0.1	GO:0022615	protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0033186	CAF-1 complex(GO:0033186)
0.0	0.2	GO:0005850	eukaryotic translation initiation factor 2 complex(GO:0005850)
0.0	0.1	GO:1990415	Pex17p-Pex14p docking complex(GO:1990415) peroxisomal importomer complex(GO:1990429)
0.0	0.1	GO:0014704	intercalated disc(GO:0014704)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.5	GO:0009374	biotin binding(GO:0009374)
0.0	0.2	GO:0001042	RNA polymerase I core binding(GO:0001042)
0.0	0.1	GO:0019215	intermediate filament binding(GO:0019215)
0.0	0.1	GO:0071916	dipeptide transporter activity(GO:0042936) dipeptide transmembrane transporter activity(GO:0071916)
0.0	0.1	GO:0055056	D-glucose transmembrane transporter activity(GO:0055056)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.5	REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS	Genes involved in ABCA transporters in lipid homeostasis
0.0	0.1	REACTOME FACILITATIVE NA INDEPENDENT GLUCOSE TRANSPORTERS	Genes involved in Facilitative Na+-independent glucose transporters
0.0	0.1	REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES	Genes involved in Chemokine receptors bind chemokines