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PRJNA207719: Tissue specific transcriptome profiling

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Results for hoxd10a

Z-value: 0.60

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Transcription factors associated with hoxd10a

Gene Symbol Gene ID Gene Info
hoxd10a
ENSDARG00000057859 homeobox D10a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxd10adr11_v1_chr9_-_1970071_19700710.266.7e-01Click!

Activity profile of hoxd10a motif

Sorted Z-values of hoxd10a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr14_+_38786298 0.41 ENSDART00000164440
si:ch211-195b11.3
si:ch211-195b11.3
chr6_+_13201358 0.39 ENSDART00000190290
CT009620.1

chr10_-_17484762 0.38 ENSDART00000137905
ENSDART00000007961
nt5c2l1
5'-nucleotidase, cytosolic II, like 1
chr5_+_22459087 0.37 ENSDART00000134781
BX546499.1

chr21_-_3796461 0.36 ENSDART00000021976
nsa2
NSA2 ribosome biogenesis homolog (S. cerevisiae)
chr16_-_45178430 0.36 ENSDART00000165186
si:dkey-33i11.9
si:dkey-33i11.9
chr7_-_22981796 0.35 ENSDART00000167565
si:dkey-171c9.3
si:dkey-171c9.3
chr1_-_52431220 0.35 ENSDART00000111256
zgc:194101
zgc:194101
chr6_+_12316438 0.32 ENSDART00000156854
si:dkey-276j7.2
si:dkey-276j7.2
chr7_+_22982201 0.30 ENSDART00000134116
ccnb3
cyclin B3
chr1_-_18811517 0.30 ENSDART00000142026
si:dkey-167i21.2
si:dkey-167i21.2
chr21_+_15295685 0.28 ENSDART00000135603
BX901878.1

chr16_-_42186093 0.28 ENSDART00000076030
fbl
fibrillarin
chr21_-_41025340 0.28 ENSDART00000148231
plac8l1
PLAC8-like 1
chr18_-_20458412 0.26 ENSDART00000012241
kif23
kinesin family member 23
chr22_+_19366866 0.26 ENSDART00000137301
si:dkey-21e2.12
si:dkey-21e2.12
chr13_-_31017960 0.24 ENSDART00000145287
wdfy4
WDFY family member 4
chr8_+_36142734 0.22 ENSDART00000159361
ENSDART00000161194
mhc2b
major histocompatibility complex class II integral membrane beta chain gene
chr23_+_28322986 0.22 ENSDART00000134710
birc5b
baculoviral IAP repeat containing 5b
chr22_-_38819603 0.20 ENSDART00000104437
si:ch211-262h13.5
si:ch211-262h13.5
chr1_-_37377509 0.19 ENSDART00000113542
tnip2
TNFAIP3 interacting protein 2
chr25_+_34915762 0.19 ENSDART00000191776
sntb2
syntrophin, beta 2
chr8_+_36354125 0.19 ENSDART00000109439
si:zfos-367g9.1
si:zfos-367g9.1
chr14_+_26439227 0.19 ENSDART00000054183
gpr137
G protein-coupled receptor 137
chr7_+_22981909 0.18 ENSDART00000122449
ccnb3
cyclin B3
chr21_+_3796620 0.18 ENSDART00000099535
ENSDART00000144515
spout1
SPOUT domain containing methyltransferase 1
chr4_-_16824556 0.18 ENSDART00000165289
ENSDART00000185839
gys2
glycogen synthase 2
chr18_+_15644559 0.17 ENSDART00000061794
nr1h4
nuclear receptor subfamily 1, group H, member 4
chr7_+_4694924 0.17 ENSDART00000144873
si:ch211-225k7.3
si:ch211-225k7.3
chr11_-_31039533 0.17 ENSDART00000127355
ier2b
immediate early response 2b
chr8_-_15292197 0.17 ENSDART00000140867
spata6
spermatogenesis associated 6
chr25_-_3217115 0.15 ENSDART00000032390
gtf2h1
general transcription factor IIH, polypeptide 1
chr19_-_35450661 0.15 ENSDART00000113574
ENSDART00000136895
anln
anillin, actin binding protein
chr2_-_1486023 0.14 ENSDART00000113774
si:ch211-188c16.1
si:ch211-188c16.1
chr9_-_2594410 0.14 ENSDART00000188306
ENSDART00000164276
sp9
sp9 transcription factor
chr2_-_42628028 0.14 ENSDART00000179866
myo10
myosin X
chr3_-_29899172 0.14 ENSDART00000140518
ENSDART00000020311
rpl27
ribosomal protein L27
chr6_-_39521832 0.14 ENSDART00000065038
atf1
activating transcription factor 1
chr18_+_31056645 0.13 ENSDART00000159316
mvda
mevalonate (diphospho) decarboxylase a
chr9_+_45605410 0.13 ENSDART00000136444
ENSDART00000007189
ENSDART00000158713
ENSDART00000182671
traf3ip1
TNF receptor-associated factor 3 interacting protein 1
chr19_+_4051535 0.13 ENSDART00000167084
btr24
bloodthirsty-related gene family, member 24
chr13_+_27232848 0.12 ENSDART00000138043
rin2
Ras and Rab interactor 2
chr25_+_34915576 0.12 ENSDART00000073441
sntb2
syntrophin, beta 2
chr1_-_19764038 0.12 ENSDART00000005733
tma16
translation machinery associated 16 homolog
chr17_+_42274825 0.12 ENSDART00000020156
pax1a
paired box 1a
chr5_+_35458346 0.12 ENSDART00000141239
erlin2
ER lipid raft associated 2
chr21_+_3796196 0.11 ENSDART00000146754
spout1
SPOUT domain containing methyltransferase 1
chr10_-_20453995 0.11 ENSDART00000168541
ENSDART00000164072
si:ch211-113d22.2
si:ch211-113d22.2
chr7_+_5007310 0.11 ENSDART00000146083
si:ch211-272h9.3
si:ch211-272h9.3
chr23_+_36074798 0.11 ENSDART00000133760
ENSDART00000103146
hoxc11a
homeobox C11a
chr9_-_3519253 0.11 ENSDART00000169586
dcaf17
ddb1 and cul4 associated factor 17
chr10_-_3138403 0.11 ENSDART00000183365
ube2l3a
ubiquitin-conjugating enzyme E2L 3a
chr3_-_26184018 0.11 ENSDART00000191604
si:ch211-11k18.4
si:ch211-11k18.4
chr7_-_3850090 0.10 ENSDART00000113403
ENSDART00000137683
ENSDART00000049926
si:dkey-28d5.12
si:dkey-88n24.7
si:dkey-28d5.12
si:dkey-88n24.7
chr19_-_3056235 0.10 ENSDART00000137020
bop1
block of proliferation 1
chr5_-_23805387 0.10 ENSDART00000133805
gbgt1l4
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 4
chr7_+_4219234 0.10 ENSDART00000187891
ENSDART00000173246
ENSDART00000172808
si:ch211-63p21.4
si:ch211-63p21.4
chr6_+_29386728 0.10 ENSDART00000104303
actl6a
actin-like 6A
chr13_+_27232694 0.10 ENSDART00000131128
rin2
Ras and Rab interactor 2
chr2_-_23349116 0.10 ENSDART00000099690
fam129ab
family with sequence similarity 129, member Ab
chr5_+_25317061 0.10 ENSDART00000170097
trpm6
transient receptor potential cation channel, subfamily M, member 6
chr1_-_40911332 0.10 ENSDART00000027463
hmx4
H6 family homeobox 4
chr5_+_6672870 0.09 ENSDART00000126598
pxna
paxillin a
chr19_+_47299212 0.09 ENSDART00000158262
tpmt.1
thiopurine S-methyltransferase, tandem duplicate 1
chr2_-_23411368 0.09 ENSDART00000159495
si:ch73-129a22.11
si:ch73-129a22.11
chr12_+_30788912 0.09 ENSDART00000160422
aldh18a1
aldehyde dehydrogenase 18 family, member A1
chr20_+_18993452 0.09 ENSDART00000025509
tdh
L-threonine dehydrogenase
chr25_+_13620555 0.08 ENSDART00000163642
si:ch211-172l8.4
si:ch211-172l8.4
chr13_-_50108337 0.08 ENSDART00000133308
nid1a
nidogen 1a
chr4_-_67589158 0.08 ENSDART00000184361
BX088712.2

chr7_+_4854690 0.08 ENSDART00000131645
si:dkey-28d5.7
si:dkey-28d5.7
chr7_+_4194306 0.08 ENSDART00000190454
si:dkey-28d5.5
si:dkey-28d5.5
chr11_-_42752884 0.08 ENSDART00000186025
si:ch73-106k19.5
si:ch73-106k19.5
chr18_+_7543347 0.08 ENSDART00000103467
arf5
ADP-ribosylation factor 5
chr22_+_22302614 0.08 ENSDART00000049434
scamp4
secretory carrier membrane protein 4
chr9_+_19489304 0.08 ENSDART00000151920
si:ch211-140m22.7
si:ch211-140m22.7
chr7_+_4592867 0.08 ENSDART00000192614
si:dkey-83f18.15
si:dkey-83f18.15
chr17_-_28707898 0.08 ENSDART00000135752
ENSDART00000061853
ap4s1
adaptor-related protein complex 4, sigma 1 subunit
chr11_+_37265692 0.07 ENSDART00000184691
il17rc
interleukin 17 receptor C
chr9_+_3519191 0.07 ENSDART00000008606
mettl8
methyltransferase like 8
chr6_-_25165693 0.07 ENSDART00000167259
znf326
zinc finger protein 326
chr9_+_21151138 0.07 ENSDART00000133903
hao2
hydroxyacid oxidase 2 (long chain)
chr9_-_22272181 0.07 ENSDART00000113174
crygm2d7
crystallin, gamma M2d7
chr25_-_12412704 0.07 ENSDART00000168275
det1
DET1, COP1 ubiquitin ligase partner
chr9_-_19489264 0.06 ENSDART00000122894
wdr4
WD repeat domain 4
chr7_+_4938463 0.06 ENSDART00000143722
si:dkey-28d5.14
si:dkey-28d5.14
chr16_-_16152199 0.06 ENSDART00000012718
fabp11b
fatty acid binding protein 11b
chr20_+_13894123 0.06 ENSDART00000007744
slc30a1a
solute carrier family 30 (zinc transporter), member 1a
chr3_-_43954343 0.06 ENSDART00000157580
ubfd1
ubiquitin family domain containing 1
chr5_+_50912729 0.06 ENSDART00000190837
col4a3bpa
collagen, type IV, alpha 3 (Goodpasture antigen) binding protein a
chr7_+_17973269 0.05 ENSDART00000079969
kcnk7
potassium channel, subfamily K, member 7
chr11_-_39118882 0.05 ENSDART00000113185
ENSDART00000156526
ap5b1
adaptor-related protein complex 5, beta 1 subunit
chr9_-_3519717 0.05 ENSDART00000145043
dcaf17
ddb1 and cul4 associated factor 17
chr15_-_568645 0.05 ENSDART00000156744
cbln18
cerebellin 18
chr20_-_25445237 0.05 ENSDART00000145034
ENSDART00000018049
mrpl19
mitochondrial ribosomal protein L19
chr21_+_5192016 0.05 ENSDART00000139288
si:dkey-121h17.7
si:dkey-121h17.7
chr2_+_10280645 0.04 ENSDART00000063996
gadd45aa
growth arrest and DNA-damage-inducible, alpha, a
chr24_+_17069420 0.04 ENSDART00000014787
pip4k2aa
phosphatidylinositol-5-phosphate 4-kinase, type II, alpha a
chr11_-_27953135 0.04 ENSDART00000168338
ece1
endothelin converting enzyme 1
chr14_+_20941038 0.04 ENSDART00000182539
zgc:66433
zgc:66433
chr24_+_15655069 0.04 ENSDART00000042943
ENSDART00000181296
fbxo15
F-box protein 15
chr11_+_14104417 0.04 ENSDART00000059752
ENSDART00000186575
med16
mediator complex subunit 16
chr8_+_23142946 0.04 ENSDART00000152933
si:ch211-196c10.13
si:ch211-196c10.13
chr24_-_24038800 0.04 ENSDART00000080549
lyz
lysozyme
chr16_+_54829293 0.04 ENSDART00000024729
pabpc1a
poly(A) binding protein, cytoplasmic 1a
chr13_+_24717880 0.04 ENSDART00000147713
cfap43
cilia and flagella associated protein 43
chr16_+_813780 0.04 ENSDART00000162474
ENSDART00000161774
irx1a
iroquois homeobox 1a
chr19_-_10324573 0.03 ENSDART00000171795
u2af2b
U2 small nuclear RNA auxiliary factor 2b
chr10_-_22491353 0.03 ENSDART00000180783
ENSDART00000159564
epob
erythropoietin b
chr3_-_11828206 0.03 ENSDART00000018159
si:ch211-262e15.1
si:ch211-262e15.1
chr19_-_10324182 0.03 ENSDART00000151352
ENSDART00000151162
ENSDART00000023571
u2af2b
U2 small nuclear RNA auxiliary factor 2b
chr23_-_17451264 0.03 ENSDART00000190748
tpd52l2b
tumor protein D52-like 2b
chr3_-_25107802 0.03 ENSDART00000055432
rbx1
ring-box 1, E3 ubiquitin protein ligase
chr20_-_30931139 0.03 ENSDART00000006778
ENSDART00000146376
acat2
acetyl-CoA acetyltransferase 2
chr18_-_2222128 0.02 ENSDART00000171402
pigb
phosphatidylinositol glycan anchor biosynthesis, class B
chr25_-_2723902 0.02 ENSDART00000143721
ENSDART00000175224
adpgk
ADP-dependent glucokinase
chr25_-_2723682 0.02 ENSDART00000113382
adpgk
ADP-dependent glucokinase
chr2_+_21356242 0.02 ENSDART00000145670
ENSDART00000146600
ctdsplb
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like b
chr16_-_26296477 0.02 ENSDART00000157553
erfl1
Ets2 repressor factor like 1
chr10_-_2788668 0.02 ENSDART00000131749
ENSDART00000124356
ENSDART00000085031
ash2l
ash2 (absent, small, or homeotic)-like (Drosophila)
chr17_-_19344999 0.02 ENSDART00000138315
gsc
goosecoid
chr7_+_4194055 0.02 ENSDART00000105073
si:dkey-28d5.14
si:dkey-28d5.14
chr19_+_13994563 0.02 ENSDART00000164696
tmem222b
transmembrane protein 222b
chr16_-_41059919 0.01 ENSDART00000188803
si:dkey-201i6.8
si:dkey-201i6.8
chr24_+_15655233 0.01 ENSDART00000143160
fbxo15
F-box protein 15
chr1_+_32341734 0.01 ENSDART00000135078
pudp
pseudouridine 5'-phosphatase
chr17_-_15201031 0.01 ENSDART00000124426
socs4
suppressor of cytokine signaling 4
chr18_+_7363242 0.01 ENSDART00000133375
si:dkey-30c15.17
si:dkey-30c15.17
chr17_+_31621788 0.01 ENSDART00000111629
ENSDART00000157148
cinp
cyclin-dependent kinase 2 interacting protein
chr5_-_24270989 0.01 ENSDART00000146251
si:ch211-137i24.12
si:ch211-137i24.12
chr23_+_12852655 0.01 ENSDART00000183015
smc1al
structural maintenance of chromosomes 1A, like

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxd10a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0000212 meiotic spindle organization(GO:0000212)
0.1 0.3 GO:0051661 maintenance of centrosome location(GO:0051661)
0.1 0.2 GO:0034134 toll-like receptor 2 signaling pathway(GO:0034134) toll-like receptor 3 signaling pathway(GO:0034138)
0.0 0.2 GO:0008356 asymmetric cell division(GO:0008356)
0.0 0.3 GO:0040016 embryonic cleavage(GO:0040016)
0.0 0.1 GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway(GO:0019287)
0.0 0.3 GO:0031126 snoRNA 3'-end processing(GO:0031126)
0.0 0.1 GO:0030326 embryonic limb morphogenesis(GO:0030326)
0.0 0.1 GO:1990359 detoxification of zinc ion(GO:0010312) stress response to zinc ion(GO:1990359)
0.0 0.1 GO:0090660 regulation of microtubule polymerization(GO:0031113) cerebrospinal fluid circulation(GO:0090660)
0.0 0.2 GO:1904263 positive regulation of TORC1 signaling(GO:1904263)
0.0 0.1 GO:0036265 RNA (guanine-N7)-methylation(GO:0036265)
0.0 0.5 GO:0000460 maturation of 5.8S rRNA(GO:0000460)
0.0 0.5 GO:0010389 regulation of G2/M transition of mitotic cell cycle(GO:0010389)
0.0 0.2 GO:0050728 negative regulation of inflammatory response(GO:0050728)
0.0 0.1 GO:0006567 threonine metabolic process(GO:0006566) threonine catabolic process(GO:0006567)
0.0 0.2 GO:0070816 phosphorylation of RNA polymerase II C-terminal domain(GO:0070816)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.0 0.1 GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane(GO:0098556)
0.0 0.3 GO:0031616 spindle pole centrosome(GO:0031616)
0.0 0.1 GO:0070545 PeBoW complex(GO:0070545)
0.0 0.2 GO:0097224 sperm connecting piece(GO:0097224)
0.0 0.2 GO:0042613 MHC class II protein complex(GO:0042613)
0.0 0.2 GO:0000439 core TFIIH complex(GO:0000439)
0.0 0.2 GO:0005826 actomyosin contractile ring(GO:0005826)
0.0 0.1 GO:0044609 DBIRD complex(GO:0044609)
0.0 0.4 GO:0030687 preribosome, large subunit precursor(GO:0030687)
0.0 0.3 GO:0090665 dystrophin-associated glycoprotein complex(GO:0016010) glycoprotein complex(GO:0090665)
0.0 0.1 GO:1990589 ATF4-CREB1 transcription factor complex(GO:1990589)
0.0 0.5 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0032027 myosin light chain binding(GO:0032027)
0.0 0.2 GO:0004373 glycogen (starch) synthase activity(GO:0004373)
0.0 0.1 GO:0008119 thiopurine S-methyltransferase activity(GO:0008119)
0.0 0.3 GO:0035198 miRNA binding(GO:0035198)
0.0 0.2 GO:0032052 bile acid binding(GO:0032052)
0.0 0.1 GO:0016427 tRNA (cytosine) methyltransferase activity(GO:0016427)
0.0 0.4 GO:0008253 5'-nucleotidase activity(GO:0008253)
0.0 0.1 GO:0016774 phosphotransferase activity, carboxyl group as acceptor(GO:0016774)
0.0 0.1 GO:0008743 L-threonine 3-dehydrogenase activity(GO:0008743)
0.0 0.2 GO:0043028 cysteine-type endopeptidase inhibitor activity involved in apoptotic process(GO:0043027) cysteine-type endopeptidase regulator activity involved in apoptotic process(GO:0043028)
0.0 0.3 GO:0008649 rRNA methyltransferase activity(GO:0008649)
0.0 0.1 GO:1990756 protein binding, bridging involved in substrate recognition for ubiquitination(GO:1990756)
0.0 0.2 GO:0070530 K63-linked polyubiquitin binding(GO:0070530)
0.0 0.0 GO:0005128 erythropoietin receptor binding(GO:0005128)
0.0 0.0 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.4 GO:0051018 protein kinase A binding(GO:0051018)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME KINESINS Genes involved in Kinesins