PRJNA207719: Tissue specific transcriptome profiling

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
nkx2.1 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000019835	NK2 homeobox 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
nkx2.1	dr11_v1_chr17_+_38262408_38262408	-0.43	4.7e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr25_-_28674739 Show fit	0.96	ENSDART00000067073	lrrc10 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leucine rich repeat containing 10
chr5_+_51597677 Show fit	0.81	ENSDART00000048210 ENSDART00000184797	ckmt2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	creatine kinase, mitochondrial 2b (sarcomeric)
chr5_+_51594209 Show fit	0.73	ENSDART00000164668 ENSDART00000058403 ENSDART00000055857	ckmt2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	creatine kinase, mitochondrial 2b (sarcomeric)
chr17_+_20605013 Show fit	0.59	ENSDART00000156878	si:ch73-288o11.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-288o11.5
chr4_-_67799941 Show fit	0.50	ENSDART00000185830	si:ch211-66c13.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-66c13.1
chr25_+_25124684 Show fit	0.50	ENSDART00000167542	ldha Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lactate dehydrogenase A4
chr3_+_24207243 Show fit	0.49	ENSDART00000023454 ENSDART00000136400	adsl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adenylosuccinate lyase
chr2_+_26237322 Show fit	0.46	ENSDART00000030520	palm1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	paralemmin 1b
chr7_+_48555400 Show fit	0.46	ENSDART00000174474	kcnq1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	potassium voltage-gated channel, KQT-like subfamily, member 1
chr7_+_48555626 Show fit	0.43	ENSDART00000125483 ENSDART00000083514	kcnq1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	potassium voltage-gated channel, KQT-like subfamily, member 1
chr6_-_39051319 Show fit	0.35	ENSDART00000155093	tns2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tensin 2b
chr22_+_39096911 Show fit	0.35	ENSDART00000157127 ENSDART00000153841	lmcd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LIM and cysteine-rich domains 1
chrM_+_10590 Show fit	0.33	ENSDART00000093615	mt-nd3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NADH dehydrogenase 3, mitochondrial
chr23_-_33558161 Show fit	0.33	ENSDART00000018301	itga5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
chr2_+_26240339 Show fit	0.27	ENSDART00000191006	palm1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	paralemmin 1b
chr7_+_25053331 Show fit	0.25	ENSDART00000173998	si:dkey-23i12.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-23i12.7
chr18_+_808911 Show fit	0.25	ENSDART00000172518	cox5ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cytochrome c oxidase subunit Vab
chr12_+_34953038 Show fit	0.23	ENSDART00000187022 ENSDART00000123988 ENSDART00000027034	qki2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	QKI, KH domain containing, RNA binding 2
chr1_+_55662491 Show fit	0.21	ENSDART00000152386	adgre8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adhesion G protein-coupled receptor E8
chr22_-_24248420 Show fit	0.21	ENSDART00000165433	rgs2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	regulator of G protein signaling 2
chr7_+_34602991 Show fit	0.20	ENSDART00000073447	fhod1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	formin homology 2 domain containing 1
chr3_-_31019715 Show fit	0.18	ENSDART00000156687 ENSDART00000156127 ENSDART00000153945	si:dkeyp-71f10.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-71f10.5
chr8_-_36469117 Show fit	0.18	ENSDART00000111240	mhc2dab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	major histocompatibility complex class II DAB gene
chr21_-_2348838 Show fit	0.17	ENSDART00000160337	si:ch73-299h12.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-299h12.8
chr22_+_38762693 Show fit	0.16	ENSDART00000015016 ENSDART00000150187	alpi.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	alkaline phosphatase, intestinal, tandem duplicate 1
chr13_-_36579086 Show fit	0.15	ENSDART00000146671	lgals3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lectin, galactoside binding soluble 3a
chr12_-_30583668 Show fit	0.15	ENSDART00000153406	casp7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	caspase 7, apoptosis-related cysteine peptidase
chr2_-_8609653 Show fit	0.14	ENSDART00000193354 ENSDART00000189489 ENSDART00000186144	si:ch211-71m22.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-71m22.1
chr11_-_24063196 Show fit	0.13	ENSDART00000036513	trib3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tribbles pseudokinase 3
chr4_-_20314749 Show fit	0.13	ENSDART00000066894 ENSDART00000188123	dcp1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	decapping mRNA 1B
chr3_+_17933132 Show fit	0.12	ENSDART00000104299 ENSDART00000162144 ENSDART00000162242 ENSDART00000166289 ENSDART00000171101 ENSDART00000164853	cnp Links NCBI UniProt ZFIN ENSEMBL Google Show fit	2',3'-cyclic nucleotide 3' phosphodiesterase
chr4_-_14531687 Show fit	0.12	ENSDART00000182093 ENSDART00000159447	plxnb2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	plexin b2a
chr11_-_36040549 Show fit	0.11	ENSDART00000112684	setmar Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SET domain and mariner transposase fusion gene
chr7_-_30639385 Show fit	0.11	ENSDART00000173618	myo1ea Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin IE, a
chr5_-_35456269 Show fit	0.11	ENSDART00000051312	ttc33 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tetratricopeptide repeat domain 33
chr6_+_38880166 Show fit	0.11	ENSDART00000019939 ENSDART00000144286	bin2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	bridging integrator 2b
chr11_+_43403525 Show fit	0.10	ENSDART00000180683	vipb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vasoactive intestinal peptide b
chr15_-_434503 Show fit	0.10	ENSDART00000122286	CABZ01056629.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr3_-_8510201 Show fit	0.09	ENSDART00000009151	CABZ01064671.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr10_-_16062565 Show fit	0.08	ENSDART00000188728	si:dkey-184a18.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-184a18.5
chr2_-_59345920 Show fit	0.08	ENSDART00000134662	ftr37 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	finTRIM family, member 37
chr1_+_46026457 Show fit	0.08	ENSDART00000132705	si:ch211-138g9.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-138g9.2
chr22_-_5724085 Show fit	0.08	ENSDART00000110526 ENSDART00000140905	pgbd4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	piggyBac transposable element derived 4
chr13_+_27040887 Show fit	0.08	ENSDART00000132714	soul2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	heme-binding protein soul2
chr1_+_27977297 Show fit	0.07	ENSDART00000180692 ENSDART00000166819	sugt1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone
chr25_+_19485198 Show fit	0.06	ENSDART00000156730	glsl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glutaminase like
chr1_-_59571758 Show fit	0.06	ENSDART00000193546 ENSDART00000167087	wfikkn1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1
chr6_-_46875310 Show fit	0.06	ENSDART00000154442	igfn1.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	immunoglobulin-like and fibronectin type III domain containing 1, tandem duplicate 3
chr9_+_7724152 Show fit	0.06	ENSDART00000061716	mnx2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	motor neuron and pancreas homeobox 2a
chr6_+_38879961 Show fit	0.06	ENSDART00000184798	bin2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	bridging integrator 2b
chr7_+_48675347 Show fit	0.06	ENSDART00000157917 ENSDART00000185580	trpm5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transient receptor potential cation channel, subfamily M, member 5
chr4_+_76748500 Show fit	0.05	ENSDART00000075607	ms4a17a.10 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane-spanning 4-domains, subfamily A, member 17A.10
chr18_-_39321484 Show fit	0.05	ENSDART00000077694	leo1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LEO1 homolog, Paf1/RNA polymerase II complex component
chr11_-_8271374 Show fit	0.05	ENSDART00000168253	pimr202 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 202
chr21_+_34088377 Show fit	0.05	ENSDART00000170070	mtmr1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myotubularin related protein 1b
chr7_-_48733662 Show fit	0.05	ENSDART00000191675	traf6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TNF receptor-associated factor 6
chr15_-_23482088 Show fit	0.04	ENSDART00000185823 ENSDART00000185523	nlrx1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NLR family member X1
chr1_-_43862638 Show fit	0.04	ENSDART00000145044	tacr3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tachykinin receptor 3a
chr1_-_58000438 Show fit	0.04	ENSDART00000163761	si:ch211-114l13.9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-114l13.9
chr16_+_5539189 Show fit	0.04	ENSDART00000178106	CR848788.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr17_+_23975762 Show fit	0.03	ENSDART00000155941	xpo1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	exportin 1 (CRM1 homolog, yeast) b
chr11_+_12879635 Show fit	0.03	ENSDART00000182515 ENSDART00000081296	si:dkey-11m19.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-11m19.5
chr4_-_50926767 Show fit	0.03	ENSDART00000183430	si:ch211-208f21.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-208f21.3
chr11_+_583725 Show fit	0.03	ENSDART00000189415	mkrn2os.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MKRN2 opposite strand, tandem duplicate 2
chr1_-_23294753 Show fit	0.03	ENSDART00000013263	ugdh Links NCBI UniProt ZFIN ENSEMBL Google Show fit	UDP-glucose 6-dehydrogenase
chr3_+_22335030 Show fit	0.03	ENSDART00000055676	zgc:103564 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:103564
chr8_-_44298964 Show fit	0.03	ENSDART00000098520	fzd10 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	frizzled class receptor 10
chr15_-_4053149 Show fit	0.03	ENSDART00000189076	CR626884.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr12_+_20506197 Show fit	0.02	ENSDART00000153010	si:zfos-754c12.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:zfos-754c12.2
chr4_-_2052687 Show fit	0.02	ENSDART00000138291 ENSDART00000150844	cpsf6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cleavage and polyadenylation specific factor 6
chr1_+_55583116 Show fit	0.02	ENSDART00000152163	adgre19 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adhesion G protein-coupled receptor E19
chr9_-_7089303 Show fit	0.02	ENSDART00000146609	coa5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cytochrome C oxidase assembly factor 5
chr14_-_33478963 Show fit	0.02	ENSDART00000132813	lamp2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysosomal-associated membrane protein 2
chr7_-_59123066 Show fit	0.02	ENSDART00000175438	dennd4c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DENN/MADD domain containing 4C
chr7_+_42461850 Show fit	0.02	ENSDART00000190350	adamts18 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 18
chr21_-_2162850 Show fit	0.02	ENSDART00000159731	gb:ai877918 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	expressed sequence AI877918
chr20_+_46255057 Show fit	0.02	ENSDART00000100536	taar14i Links NCBI UniProt ZFIN ENSEMBL Google Show fit	trace amine associated receptor 14i
chr12_+_30788912 Show fit	0.02	ENSDART00000160422	aldh18a1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	aldehyde dehydrogenase 18 family, member A1
chr6_+_18531932 Show fit	0.01	ENSDART00000165271	suz12b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SUZ12 polycomb repressive complex 2b subunit
chr7_-_3895071 Show fit	0.01	ENSDART00000175200	si:dkey-88n24.11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-88n24.11
chr20_+_9128829 Show fit	0.01	ENSDART00000064144 ENSDART00000137450	bpnt1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	bisphosphate nucleotidase 1
chr7_+_25825667 Show fit	0.01	ENSDART00000149835	mtm1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myotubularin 1
chr11_-_1956204 Show fit	0.01	ENSDART00000185541	nr1d4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear receptor subfamily 1, group D, member 4b
chr18_-_22701800 Show fit	0.00	ENSDART00000135098	si:ch73-113g13.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-113g13.3
chr2_-_52020049 Show fit	0.00	ENSDART00000128198 ENSDART00000135331	scn12aa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sodium channel, voltage gated, type XII, alpha a
chr3_-_7464250 Show fit	0.00	ENSDART00000159873	znf1001 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 1001
chr14_-_16476863 Show fit	0.00	ENSDART00000089021	canx Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calnexin
chr17_+_24597001 Show fit	0.00	ENSDART00000191834	rlf Links NCBI UniProt ZFIN ENSEMBL Google Show fit	rearranged L-myc fusion

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.5	GO:0046314	phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314)
0.1	1.0	GO:0061026	cardiac muscle tissue regeneration(GO:0061026)
0.1	0.3	GO:0090245	axis elongation involved in somitogenesis(GO:0090245)
0.1	0.5	GO:0006167	AMP biosynthetic process(GO:0006167)
0.1	0.2	GO:0090299	regulation of neural crest formation(GO:0090299)
0.0	0.2	GO:0072677	eosinophil chemotaxis(GO:0048245) eosinophil migration(GO:0072677)
0.0	0.2	GO:0071800	podosome assembly(GO:0071800)
0.0	0.1	GO:0048241	copulation(GO:0007620) regulation of epinephrine secretion(GO:0014060) positive regulation of epinephrine secretion(GO:0032812) positive regulation of catecholamine secretion(GO:0033605) penile erection(GO:0043084) epinephrine transport(GO:0048241) epinephrine secretion(GO:0048242) regulation of penile erection(GO:0060405) positive regulation of penile erection(GO:0060406) prolactin secretion(GO:0070459)
0.0	0.3	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen(GO:0006123)
0.0	0.1	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA(GO:0000290)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0001891	phagocytic cup(GO:0001891)
0.0	0.2	GO:0042613	MHC class II protein complex(GO:0042613)
0.0	0.2	GO:0001772	immunological synapse(GO:0001772)
0.0	0.3	GO:0005751	mitochondrial respiratory chain complex IV(GO:0005751)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.5	GO:0016842	amidine-lyase activity(GO:0016842)
0.1	1.5	GO:0016775	creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775)
0.1	0.5	GO:0004459	L-lactate dehydrogenase activity(GO:0004459)
0.0	0.1	GO:0031434	mitogen-activated protein kinase kinase binding(GO:0031434)
0.0	0.2	GO:0019865	IgE binding(GO:0019863) immunoglobulin binding(GO:0019865)
0.0	0.2	GO:0004035	alkaline phosphatase activity(GO:0004035)
0.0	0.3	GO:0001968	fibronectin binding(GO:0001968)
0.0	0.3	GO:0008137	NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0	0.1	GO:0017128	phospholipid scramblase activity(GO:0017128)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	PID SYNDECAN 2 PATHWAY	Syndecan-2-mediated signaling events
0.0	0.5	PID HIF1 TFPATHWAY	HIF-1-alpha transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.5	REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS	Genes involved in Purine ribonucleoside monophosphate biosynthesis
0.0	0.9	REACTOME VOLTAGE GATED POTASSIUM CHANNELS	Genes involved in Voltage gated Potassium channels
0.0	0.5	REACTOME PYRUVATE METABOLISM	Genes involved in Pyruvate metabolism
0.0	0.1	REACTOME NEGATIVE REGULATION OF THE PI3K AKT NETWORK	Genes involved in Negative regulation of the PI3K/AKT network
0.0	0.1	REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS	Genes involved in Caspase-mediated cleavage of cytoskeletal proteins
0.0	0.3	REACTOME SIGNAL TRANSDUCTION BY L1	Genes involved in Signal transduction by L1