PRJNA207719: Tissue specific transcriptome profiling

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
nkx6.3 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000060529	NK6 homeobox 3

Gene	Promoter	Pearson corr. coef.	P-value	Plot
nkx6.3	dr11_v1_chr8_+_38415374_38415374	0.12	8.5e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr16_-_12173554 Show fit	0.15	ENSDART00000110567 ENSDART00000155935	clstn3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calsyntenin 3
chr16_+_46111849 Show fit	0.15	ENSDART00000172232	sv2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	synaptic vesicle glycoprotein 2A
chr17_+_15433518 Show fit	0.14	ENSDART00000026180	fabp7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fatty acid binding protein 7, brain, a
chr17_+_15433671 Show fit	0.13	ENSDART00000149568	fabp7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fatty acid binding protein 7, brain, a
chr21_-_13123176 Show fit	0.12	ENSDART00000144866 ENSDART00000024616	fam219aa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 219, member Aa
chr2_-_1486023 Show fit	0.12	ENSDART00000113774	si:ch211-188c16.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-188c16.1
chr16_-_12173399 Show fit	0.12	ENSDART00000142574	clstn3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calsyntenin 3
chr16_-_22294265 Show fit	0.11	ENSDART00000124718	aqp10a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	aquaporin 10a
chr9_-_31278048 Show fit	0.10	ENSDART00000022204	zic5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zic family member 5 (odd-paired homolog, Drosophila)
chr12_-_10409961 Show fit	0.10	ENSDART00000149521 ENSDART00000052001	eef2k Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eukaryotic elongation factor 2 kinase
chr20_-_40755614 Show fit	0.10	ENSDART00000061247	cx32.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	connexin 32.3
chr6_+_54187643 Show fit	0.09	ENSDART00000056830	pacsin1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein kinase C and casein kinase substrate in neurons 1b
chr21_+_28445052 Show fit	0.08	ENSDART00000077871	pygma Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphorylase, glycogen, muscle A
chr4_-_1801519 Show fit	0.08	ENSDART00000188604 ENSDART00000135749	nudt4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nudix (nucleoside diphosphate linked moiety X)-type motif 4b
chr21_-_26918901 Show fit	0.07	ENSDART00000100685	lrfn4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leucine rich repeat and fibronectin type III domain containing 4a
chr20_+_40457599 Show fit	0.07	ENSDART00000017553	serinc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	serine incorporator 1
chr13_+_31286076 Show fit	0.06	ENSDART00000142725	gdf10a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	growth differentiation factor 10a
chr9_-_43538328 Show fit	0.05	ENSDART00000140526	znf385b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 385B
chr14_+_14662116 Show fit	0.05	ENSDART00000161693	cetn2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	centrin, EF-hand protein, 2
chr5_+_34623107 Show fit	0.05	ENSDART00000184126	enc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ectodermal-neural cortex 1
chr2_+_2223837 Show fit	0.05	ENSDART00000101038 ENSDART00000129354	tmie Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane inner ear
chr4_+_43522680 Show fit	0.05	ENSDART00000182252	si:dkeyp-53e4.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-53e4.4
chr3_+_45687266 Show fit	0.05	ENSDART00000131652	gpr146 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	G protein-coupled receptor 146
chr3_-_60175470 Show fit	0.04	ENSDART00000156597	si:ch73-364h19.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-364h19.1
chr11_-_34219211 Show fit	0.04	ENSDART00000098472	tmem44 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 44
chr3_+_18795570 Show fit	0.04	ENSDART00000042368	fahd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fumarylacetoacetate hydrolase domain containing 1
chr6_-_12588044 Show fit	0.04	ENSDART00000047896	slc15a1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 15 (oligopeptide transporter), member 1b
chr13_+_22476742 Show fit	0.04	ENSDART00000078759 ENSDART00000130101 ENSDART00000137220 ENSDART00000133065 ENSDART00000147348	ldb3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LIM domain binding 3a
chr18_-_17485419 Show fit	0.03	ENSDART00000018764	foxl1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	forkhead box L1
chr21_+_34088110 Show fit	0.03	ENSDART00000145123 ENSDART00000029599 ENSDART00000147519	mtmr1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myotubularin related protein 1b
chr17_+_30369396 Show fit	0.03	ENSDART00000076611	greb1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	growth regulation by estrogen in breast cancer 1
chr20_-_9095105 Show fit	0.02	ENSDART00000140792	oma1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	OMA1 zinc metallopeptidase
chr25_+_24291156 Show fit	0.02	ENSDART00000083407	b4galnt4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	beta-1,4-N-acetyl-galactosaminyl transferase 4a
chr6_-_16717878 Show fit	0.02	ENSDART00000153552	nomo Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nodal modulator
chr10_+_39248911 Show fit	0.02	ENSDART00000170079 ENSDART00000167974	foxred1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	FAD-dependent oxidoreductase domain containing 1
chr4_+_2637947 Show fit	0.02	ENSDART00000130623	dus4l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dihydrouridine synthase 4-like (S. cerevisiae)
chr13_-_40141630 Show fit	0.02	ENSDART00000181618 ENSDART00000171583 ENSDART00000192780	crtac1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cartilage acidic protein 1b
chr11_-_2478374 Show fit	0.02	ENSDART00000173205	si:ch73-267c23.10 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-267c23.10
chr13_+_36958086 Show fit	0.01	ENSDART00000024386	frmd6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	FERM domain containing 6
chr3_-_58798377 Show fit	0.01	ENSDART00000161248	si:ch73-281f12.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-281f12.4
chr17_-_31483469 Show fit	0.01	ENSDART00000062907 ENSDART00000061547	ltk Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leukocyte receptor tyrosine kinase
chr12_+_48803098 Show fit	0.01	ENSDART00000074768	ppifb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	peptidylprolyl isomerase Fb
chr20_-_43663494 Show fit	0.01	ENSDART00000144564	BX470188.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr6_-_37469775 Show fit	0.01	ENSDART00000156546	plcxd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphatidylinositol-specific phospholipase C, X domain containing 1
chr15_+_31344472 Show fit	0.00	ENSDART00000146695 ENSDART00000159182 ENSDART00000060125	or107-1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family D, subfamily 107, member 1
chr4_+_4509996 Show fit	0.00	ENSDART00000028694	gnsa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glucosamine (N-acetyl)-6-sulfatase a
chr20_-_45060241 Show fit	0.00	ENSDART00000185227	klhl29 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kelch-like family member 29
chr12_-_6880694 Show fit	0.00	ENSDART00000171846	pcdh15b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protocadherin-related 15b
chr20_-_43750771 Show fit	0.00	ENSDART00000100605	ttc32 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tetratricopeptide repeat domain 32
chr3_-_26787430 Show fit	0.00	ENSDART00000087047	rab40c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RAB40c, member RAS oncogene family
chr3_-_58798815 Show fit	0.00	ENSDART00000082920	si:ch73-281f12.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-281f12.4
chr6_+_4033832 Show fit	0.00	ENSDART00000159952	sema5bb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Bb

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0051965	positive regulation of synapse assembly(GO:0051965)
0.0	0.1	GO:0052576	carbohydrate localization(GO:0052575) carbohydrate storage(GO:0052576)
0.0	0.1	GO:0071543	diphosphoinositol polyphosphate metabolic process(GO:0071543) diadenosine pentaphosphate metabolic process(GO:1901906) diadenosine pentaphosphate catabolic process(GO:1901907) diadenosine hexaphosphate metabolic process(GO:1901908) diadenosine hexaphosphate catabolic process(GO:1901909) adenosine 5'-(hexahydrogen pentaphosphate) metabolic process(GO:1901910) adenosine 5'-(hexahydrogen pentaphosphate) catabolic process(GO:1901911)
0.0	0.1	GO:0033278	cell proliferation in midbrain(GO:0033278)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0015105	arsenite transmembrane transporter activity(GO:0015105)
0.0	0.3	GO:0005504	fatty acid binding(GO:0005504)
0.0	0.1	GO:0004645	phosphorylase activity(GO:0004645) glycogen phosphorylase activity(GO:0008184)
0.0	0.1	GO:0000298	endopolyphosphatase activity(GO:0000298) diphosphoinositol-polyphosphate diphosphatase activity(GO:0008486) bis(5'-adenosyl)-hexaphosphatase activity(GO:0034431) bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME MTORC1 MEDIATED SIGNALLING	Genes involved in mTORC1-mediated signalling