PRJNA207719: Tissue specific transcriptome profiling

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
rarab Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000034893	retinoic acid receptor, alpha b
raraa Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000056783	retinoic acid receptor, alpha a
rarab Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000111757	retinoic acid receptor, alpha b

Gene	Promoter	Pearson corr. coef.	P-value	Plot
raraa	dr11_v1_chr12_+_10952794_10952794	-0.55	3.3e-01	Click!
rarab	dr11_v1_chr3_-_33175583_33175583	-0.51	3.8e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr22_+_38173960 Show fit	0.49	ENSDART00000010537	cp Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ceruloplasmin
chr4_+_1530287 Show fit	0.45	ENSDART00000067446	slc38a4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 38, member 4
chr14_-_51855047 Show fit	0.39	ENSDART00000088912	cplx1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	complexin 1
chr18_+_8340886 Show fit	0.38	ENSDART00000081132	cpt1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	carnitine palmitoyltransferase 1B (muscle)
chr17_+_33340675 Show fit	0.26	ENSDART00000184396 ENSDART00000077553	xdh Links NCBI UniProt ZFIN ENSEMBL Google Show fit	xanthine dehydrogenase
chr22_+_21324398 Show fit	0.22	ENSDART00000168509	shc2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SHC (Src homology 2 domain containing) transforming protein 2
chr10_+_19595009 Show fit	0.20	ENSDART00000112276	zgc:173837 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:173837
chr11_-_34147205 Show fit	0.18	ENSDART00000173216	atp13a3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATPase 13A3
chr3_+_33367954 Show fit	0.18	ENSDART00000103161	mpp2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane protein, palmitoylated 2a (MAGUK p55 subfamily member 2)
chr13_+_28618086 Show fit	0.18	ENSDART00000087001	cnnm2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cyclin and CBS domain divalent metal cation transport mediator 2a
chr23_-_3703569 Show fit	0.15	ENSDART00000143731	pacsin1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein kinase C and casein kinase substrate in neurons 1a
chr22_+_20208185 Show fit	0.15	ENSDART00000142748	si:dkey-110c1.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-110c1.7
chr13_+_24834199 Show fit	0.14	ENSDART00000101274	zgc:153981 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:153981
chr1_+_59154521 Show fit	0.12	ENSDART00000130089 ENSDART00000152456	soul5l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	heme-binding protein soul5, like
chr21_+_2506013 Show fit	0.12	ENSDART00000162351	hmgcrb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	3-hydroxy-3-methylglutaryl-CoA reductase b
chr6_-_40029423 Show fit	0.12	ENSDART00000103230	pfkfb4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4b
chr23_-_21758253 Show fit	0.10	ENSDART00000046613	vps13d Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vacuolar protein sorting 13 homolog D (S. cerevisiae)
chr23_+_25822742 Show fit	0.09	ENSDART00000184436	r3hdml Links NCBI UniProt ZFIN ENSEMBL Google Show fit	R3H domain containing-like
chr14_-_50892442 Show fit	0.09	ENSDART00000174562	CDHR2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cadherin related family member 2
chr10_-_41450367 Show fit	0.09	ENSDART00000122682 ENSDART00000189549	cabp1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium binding protein 1b
chr18_+_3338228 Show fit	0.09	ENSDART00000161520	gdpd4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glycerophosphodiester phosphodiesterase domain containing 4a
chr22_-_31788170 Show fit	0.08	ENSDART00000170925	pimr207 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 207
chr7_-_69352424 Show fit	0.08	ENSDART00000170714	ap1g1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adaptor-related protein complex 1, gamma 1 subunit
chr16_-_22194400 Show fit	0.08	ENSDART00000186042	il6r Links NCBI UniProt ZFIN ENSEMBL Google Show fit	interleukin 6 receptor
chr18_+_1145571 Show fit	0.07	ENSDART00000135055	rec114 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	REC114 meiotic recombination protein
chr8_-_13419049 Show fit	0.07	ENSDART00000133656	pimr101 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 101
chr14_+_36497250 Show fit	0.07	ENSDART00000184727	TENM3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-237h12.3
chr25_+_2263857 Show fit	0.07	ENSDART00000076439	yars2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tyrosyl-tRNA synthetase 2, mitochondrial
chr8_-_13428740 Show fit	0.07	ENSDART00000131826	CR354547.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr8_-_13471916 Show fit	0.07	ENSDART00000146558	pimr105 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 105
chr12_-_34427909 Show fit	0.07	ENSDART00000129501	tmem235 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 235
chr5_-_64823750 Show fit	0.07	ENSDART00000140305	lix1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	limb and CNS expressed 1
chr15_+_31735931 Show fit	0.06	ENSDART00000185681 ENSDART00000149137	rxfp2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	relaxin/insulin-like family peptide receptor 2b
chr19_+_5291935 Show fit	0.06	ENSDART00000141237	si:dkeyp-113d7.10 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-113d7.10
chr14_+_41518257 Show fit	0.06	ENSDART00000050037	chrnb3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cholinergic receptor, nicotinic, beta 3b (neuronal)
chr8_-_13486258 Show fit	0.06	ENSDART00000137459	pimr104 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 104
chr5_-_3885727 Show fit	0.06	ENSDART00000143250	mlxipl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MLX interacting protein like
chr8_-_13442871 Show fit	0.06	ENSDART00000144887	pimr106 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 106
chr18_+_19842569 Show fit	0.06	ENSDART00000147470	iqch Links NCBI UniProt ZFIN ENSEMBL Google Show fit	IQ motif containing H
chr4_-_191736 Show fit	0.06	ENSDART00000169187 ENSDART00000192054	ptpro Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein tyrosine phosphatase, receptor type, O
chr8_-_13454281 Show fit	0.05	ENSDART00000141959	CR354547.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr24_+_37723362 Show fit	0.05	ENSDART00000136836	rab11fip3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RAB11 family interacting protein 3 (class II)
chr14_-_52552875 Show fit	0.05	ENSDART00000170107	ppp2r2ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein phosphatase 2, regulatory subunit B, beta a
chr8_-_10947205 Show fit	0.05	ENSDART00000164467	pqlc2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PQ loop repeat containing 2
chr7_-_24838857 Show fit	0.05	ENSDART00000179766 ENSDART00000180892	fam113 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 113
chr11_+_25111846 Show fit	0.05	ENSDART00000128705 ENSDART00000190058	ndrg3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ndrg family member 3a
chr4_+_70563225 Show fit	0.04	ENSDART00000159508	si:dkey-11d20.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-11d20.1
chr14_-_2001386 Show fit	0.04	ENSDART00000170346 ENSDART00000163975	pcdh2g5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protocadherin 2 gamma 5
chr25_-_3132060 Show fit	0.04	ENSDART00000014363	epx Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eosinophil peroxidase
chr2_+_31948352 Show fit	0.04	ENSDART00000192611	ankhb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ANKH inorganic pyrophosphate transport regulator b
chr2_+_56213694 Show fit	0.04	ENSDART00000162582	upf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	upf1 regulator of nonsense transcripts homolog (yeast)
chr10_+_22890791 Show fit	0.03	ENSDART00000176011	arrb2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	arrestin, beta 2a
chr17_+_46739693 Show fit	0.03	ENSDART00000097810	pimr22 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 22
chr4_+_3980247 Show fit	0.03	ENSDART00000049194	gpr37b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	G protein-coupled receptor 37b
chr22_-_9900378 Show fit	0.02	ENSDART00000193906	znf991 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 991
chr2_+_3696038 Show fit	0.02	ENSDART00000150499 ENSDART00000136906 ENSDART00000164152 ENSDART00000128514 ENSDART00000108964	egfra Links NCBI UniProt ZFIN ENSEMBL Google Show fit	epidermal growth factor receptor a (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)
chr2_-_55317035 Show fit	0.02	ENSDART00000169382 ENSDART00000097874	tpm4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tropomyosin 4b
chr8_+_37168570 Show fit	0.01	ENSDART00000098636	csf1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	colony stimulating factor 1b (macrophage)
chr18_+_7073130 Show fit	0.00	ENSDART00000101216 ENSDART00000148947	si:dkey-88e18.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-88e18.2
chr18_+_43183749 Show fit	0.00	ENSDART00000151166	nectin1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nectin cell adhesion molecule 1b
chr19_+_19762183 Show fit	0.00	ENSDART00000163611 ENSDART00000187604	hoxa3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	homeobox A3a
chr10_+_22891126 Show fit	0.00	ENSDART00000057291	arrb2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	arrestin, beta 2a

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0006145	purine nucleobase catabolic process(GO:0006145)
0.0	0.2	GO:0016081	synaptic vesicle docking(GO:0016081) presynaptic dense core granule exocytosis(GO:0099525)
0.0	0.5	GO:0006825	copper ion transport(GO:0006825)
0.0	0.4	GO:0009437	carnitine metabolic process(GO:0009437)
0.0	0.1	GO:0001955	blood vessel maturation(GO:0001955)
0.0	0.2	GO:0010960	magnesium ion homeostasis(GO:0010960)
0.0	0.1	GO:0045053	protein retention in Golgi apparatus(GO:0045053)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0030121	AP-1 adaptor complex(GO:0030121)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0016416	carnitine O-palmitoyltransferase activity(GO:0004095) O-palmitoyltransferase activity(GO:0016416)
0.0	0.5	GO:0004322	ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.0	0.3	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups(GO:0016725)
0.0	0.0	GO:0031701	angiotensin receptor binding(GO:0031701)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	PID VEGFR1 PATHWAY	VEGFR1 specific signals
0.0	0.4	PID HNF3B PATHWAY	FOXA2 and FOXA3 transcription factor networks
0.0	0.5	PID HIF1 TFPATHWAY	HIF-1-alpha transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	REACTOME PURINE CATABOLISM	Genes involved in Purine catabolism
0.0	0.5	REACTOME IRON UPTAKE AND TRANSPORT	Genes involved in Iron uptake and transport
0.0	0.4	REACTOME ACTIVATED AMPK STIMULATES FATTY ACID OXIDATION IN MUSCLE	Genes involved in Activated AMPK stimulates fatty-acid oxidation in muscle
0.0	0.4	REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE	Genes involved in Amino acid transport across the plasma membrane
0.0	0.2	REACTOME SIGNAL ATTENUATION	Genes involved in Signal attenuation