PRJNA207719: Tissue specific transcriptome profiling

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
sox1b Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000008131	SRY-box transcription factor 1b
sox1a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000069866	SRY-box transcription factor 1a
sox1a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000110682	SRY-box transcription factor 1a
sox1a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000114571	SRY-box transcription factor 1a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
sox1a	dr11_v1_chr9_+_21722733_21722733	-0.19	7.6e-01	Click!
sox1b	dr11_v1_chr1_+_46194333_46194333	0.08	9.0e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr25_+_18475032 Show fit	0.28	ENSDART00000073564	tes Links NCBI UniProt ZFIN ENSEMBL Google Show fit	testis derived transcript (3 LIM domains)
chr20_-_40370736 Show fit	0.21	ENSDART00000041229	fabp7b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fatty acid binding protein 7, brain, b
chr2_+_36620011 Show fit	0.19	ENSDART00000177428	pak2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	p21 protein (Cdc42/Rac)-activated kinase 2a
chr11_+_37612672 Show fit	0.18	ENSDART00000157993	hp1bp3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	heterochromatin protein 1, binding protein 3
chr23_+_31815423 Show fit	0.18	ENSDART00000075730 ENSDART00000075726	myb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	v-myb avian myeloblastosis viral oncogene homolog
chr14_+_36886950 Show fit	0.17	ENSDART00000183719	si:ch211-132p1.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-132p1.3
chr14_-_9420911 Show fit	0.16	ENSDART00000081158	sh3bgrl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SH3 domain binding glutamate-rich protein like
chr14_+_9421510 Show fit	0.16	ENSDART00000123652	hmgn6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	high mobility group nucleosome binding domain 6
chr19_-_41472228 Show fit	0.15	ENSDART00000113388	dlx5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	distal-less homeobox 5a
chr15_-_951118 Show fit	0.13	ENSDART00000171427	alox5b.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	arachidonate 5-lipoxygenase b, tandem duplicate 1
chr3_-_33970190 Show fit	0.13	ENSDART00000151238	ighj2-5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ighj2-5
chr1_+_51479128 Show fit	0.12	ENSDART00000028018	meis1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Meis homeobox 1 a
chr18_-_45761868 Show fit	0.08	ENSDART00000025423	cstf3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cleavage stimulation factor, 3' pre-RNA, subunit 3
chr19_+_20177887 Show fit	0.08	ENSDART00000008595	tra2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transformer 2 alpha homolog
chr11_-_45434959 Show fit	0.08	ENSDART00000173106 ENSDART00000172767 ENSDART00000172933 ENSDART00000172986	rfc4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	replication factor C (activator 1) 4
chr2_-_28420415 Show fit	0.08	ENSDART00000183857	CABZ01056051.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr23_-_12158685 Show fit	0.08	ENSDART00000135035	fam217b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 217, member B
chr2_-_53481912 Show fit	0.08	ENSDART00000189610	hsd11b1lb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hydroxysteroid (11-beta) dehydrogenase 1-like b
chr2_+_48687528 Show fit	0.07	ENSDART00000158312	si:dkey-53k12.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-53k12.1
chr7_-_6553460 Show fit	0.07	ENSDART00000172903	si:ch1073-220m6.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch1073-220m6.1
chr20_+_37300699 Show fit	0.07	ENSDART00000067053	vta1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vesicle (multivesicular body) trafficking 1
chr11_+_37612214 Show fit	0.07	ENSDART00000172899 ENSDART00000077496	hp1bp3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	heterochromatin protein 1, binding protein 3
chr16_-_44878245 Show fit	0.07	ENSDART00000154391 ENSDART00000154925 ENSDART00000154697	arhgap33 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Rho GTPase activating protein 33
chr3_+_4213864 Show fit	0.06	ENSDART00000059613	si:dkeyp-52c3.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-52c3.5
chr20_+_37300296 Show fit	0.06	ENSDART00000180789	vta1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vesicle (multivesicular body) trafficking 1
chr24_-_9291857 Show fit	0.06	ENSDART00000149875	tgif1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TGFB-induced factor homeobox 1
chr5_+_30520249 Show fit	0.06	ENSDART00000013431	hmbsa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hydroxymethylbilane synthase a
chr24_+_21092156 Show fit	0.05	ENSDART00000028542	ccdc191 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	coiled-coil domain containing 191
chr1_+_50639416 Show fit	0.05	ENSDART00000141977	herc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	HECT and RLD domain containing E3 ubiquitin protein ligase 3
chr23_-_6982966 Show fit	0.05	ENSDART00000033774 ENSDART00000169965	edem2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ER degradation enhancer, mannosidase alpha-like 2
chr20_+_27093042 Show fit	0.04	ENSDART00000024595	ubr7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ubiquitin protein ligase E3 component n-recognin 7
chr12_-_4598237 Show fit	0.04	ENSDART00000152489	irf3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	interferon regulatory factor 3
chr19_+_23301050 Show fit	0.04	ENSDART00000193713	si:dkey-79i2.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-79i2.4
chr1_+_25732715 Show fit	0.04	ENSDART00000140172	npy2r Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuropeptide Y receptor Y2
chr19_+_18758014 Show fit	0.04	ENSDART00000158935	clic1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chloride intracellular channel 1
chr7_-_71331690 Show fit	0.03	ENSDART00000149682	dhx15 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DEAH (Asp-Glu-Ala-His) box helicase 15
chr20_-_23852174 Show fit	0.03	ENSDART00000122414	si:dkey-15j16.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-15j16.6
chr1_-_9134045 Show fit	0.03	ENSDART00000142132	palb2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	partner and localizer of BRCA2
chr7_-_71331499 Show fit	0.03	ENSDART00000081245	dhx15 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DEAH (Asp-Glu-Ala-His) box helicase 15
chr6_-_37513133 Show fit	0.03	ENSDART00000147826	jade3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	jade family PHD finger 3
chr8_+_49096486 Show fit	0.02	ENSDART00000192998	zgc:56525 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:56525
chr2_+_31308587 Show fit	0.02	ENSDART00000027090	clul1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	clusterin-like 1 (retinal)
chr2_-_31833347 Show fit	0.02	ENSDART00000109460	nol7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nucleolar protein 7
chr4_-_9664995 Show fit	0.02	ENSDART00000180105 ENSDART00000029084	dmtf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cyclin D binding myb-like transcription factor 1
chr1_+_59328030 Show fit	0.02	ENSDART00000172464	CABZ01052576.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr16_-_21047483 Show fit	0.02	ENSDART00000136235	cbx3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromobox homolog 3b
chr5_+_51833305 Show fit	0.01	ENSDART00000165276 ENSDART00000166443	papd4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PAP associated domain containing 4
chr11_+_16216909 Show fit	0.01	ENSDART00000081035 ENSDART00000147190	slc25a26 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 25 (S-adenosylmethionine carrier), member 26
chr7_+_1383027 Show fit	0.01	ENSDART00000143762	khnyn Links NCBI UniProt ZFIN ENSEMBL Google Show fit	KH and NYN domain containing
chr25_-_27633115 Show fit	0.01	ENSDART00000131539	hyal6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hyaluronoglucosaminidase 6
chr25_+_418932 Show fit	0.01	ENSDART00000059193	prtgb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protogenin homolog b (Gallus gallus)
chr5_+_51833132 Show fit	0.01	ENSDART00000167491	papd4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PAP associated domain containing 4
chr9_+_2333927 Show fit	0.01	ENSDART00000123340	atp5mc3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATP synthase membrane subunit c locus 3a
chr19_+_15440841 Show fit	0.00	ENSDART00000182329	lin28a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lin-28 homolog A (C. elegans)
chr15_+_24005289 Show fit	0.00	ENSDART00000088648	myo18ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin XVIIIAb
chr6_-_22146258 Show fit	0.00	ENSDART00000181700	gga1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	golgi-associated, gamma adaptin ear containing, ARF binding protein 1
chr19_+_11978209 Show fit	0.00	ENSDART00000111568	polr2k Links NCBI UniProt ZFIN ENSEMBL Google Show fit	polymerase (RNA) II (DNA directed) polypeptide K

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0030852	regulation of granulocyte differentiation(GO:0030852) regulation of neutrophil differentiation(GO:0045658)
0.0	0.2	GO:0021553	olfactory nerve development(GO:0021553) olfactory nerve morphogenesis(GO:0021627) olfactory nerve formation(GO:0021628)
0.0	0.1	GO:0051122	lipoxygenase pathway(GO:0019372) linoleic acid metabolic process(GO:0043651) hepoxilin metabolic process(GO:0051121) hepoxilin biosynthetic process(GO:0051122)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005663	DNA replication factor C complex(GO:0005663)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0004051	arachidonate 5-lipoxygenase activity(GO:0004051)
0.0	0.2	GO:0005504	fatty acid binding(GO:0005504)