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PRJNA207719: Tissue specific transcriptome profiling

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Results for twist1a+twist1b+twist3

Z-value: 0.64

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Transcription factors associated with twist1a+twist1b+twist3

Gene Symbol Gene ID Gene Info
twist3
ENSDARG00000019646 twist3
twist1a
ENSDARG00000030402 twist family bHLH transcription factor 1a
twist1b
ENSDARG00000076010 twist family bHLH transcription factor 1b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
twist1bdr11_v1_chr16_+_19732543_19732543-0.721.7e-01Click!
twist1adr11_v1_chr19_-_2231146_2231188-0.692.0e-01Click!
twist3dr11_v1_chr23_+_2669_2669-0.375.4e-01Click!

Activity profile of twist1a+twist1b+twist3 motif

Sorted Z-values of twist1a+twist1b+twist3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr20_+_1412193 0.53 ENSDART00000064419
leg1.1
liver-enriched gene 1, tandem duplicate 1
chr23_-_44574059 0.52 ENSDART00000123007
si:ch73-160p18.3
si:ch73-160p18.3
chr21_-_43666420 0.48 ENSDART00000139008
ENSDART00000183996
ENSDART00000183395
si:dkey-229d11.3
si:dkey-229d11.5
si:dkey-229d11.3
si:dkey-229d11.5
chr4_+_1530287 0.44 ENSDART00000067446
slc38a4
solute carrier family 38, member 4
chr4_-_17725008 0.26 ENSDART00000016658
chpt1
choline phosphotransferase 1
chr5_-_7829657 0.24 ENSDART00000158374
pdlim5a
PDZ and LIM domain 5a
chr5_-_32505109 0.20 ENSDART00000188219
ntmt1
N-terminal Xaa-Pro-Lys N-methyltransferase 1
chr15_-_1590858 0.20 ENSDART00000081875
nnr
nanor
chr18_+_45666489 0.17 ENSDART00000180147
ENSDART00000151351
prrg4
proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
chr2_-_49997055 0.17 ENSDART00000140294
si:ch211-106n13.3
si:ch211-106n13.3
chr3_-_1963126 0.16 ENSDART00000036445
si:ch211-254c8.3
si:ch211-254c8.3
chr13_+_35690023 0.14 ENSDART00000128865
ENSDART00000130050
psme4a
proteasome activator subunit 4a
chr7_+_17485782 0.14 ENSDART00000098083
CU179759.1
Danio rerio novel immune-type receptor 1d (nitr1d), mRNA.
chr14_+_46216703 0.14 ENSDART00000136045
ENSDART00000142317
mgst2
microsomal glutathione S-transferase 2
chr21_-_35419486 0.13 ENSDART00000138529
si:dkeyp-23e4.3
si:dkeyp-23e4.3
chr18_+_33100606 0.13 ENSDART00000003907
si:ch211-229c8.13
si:ch211-229c8.13
chr13_+_35689749 0.13 ENSDART00000158726
psme4a
proteasome activator subunit 4a
chr12_-_44180132 0.13 ENSDART00000165998
si:ch73-329n5.1
si:ch73-329n5.1
chr5_-_65159258 0.12 ENSDART00000160429
sh2d3cb
SH2 domain containing 3Cb
chr11_-_34232906 0.11 ENSDART00000162150
lsg1
large 60S subunit nuclear export GTPase 1
chr6_-_16981321 0.11 ENSDART00000154585
pimr29
Pim proto-oncogene, serine/threonine kinase, related 29
chr22_-_5752009 0.11 ENSDART00000190052
bcdin3d
BCDIN3 domain containing
chr3_+_59411956 0.11 ENSDART00000166982
sec14l1
SEC14-like lipid binding 1
chr13_-_9119867 0.10 ENSDART00000137255
si:dkey-112g5.15
si:dkey-112g5.15
chr1_-_55058795 0.10 ENSDART00000187293
peli1a
pellino E3 ubiquitin protein ligase 1a
chr25_+_25438322 0.09 ENSDART00000150364
LRRC56
si:ch211-103e16.5
chr4_+_73941991 0.09 ENSDART00000130643
CABZ01069020.1

chr4_-_36476889 0.09 ENSDART00000163956
si:ch211-263l8.1
si:ch211-263l8.1
chr4_+_77973876 0.08 ENSDART00000057423
terfa
telomeric repeat binding factor a
chr4_+_33830944 0.08 ENSDART00000170238
znf1026
zinc finger protein 1026
chr11_+_25472758 0.08 ENSDART00000011178
opn1sw2
opsin 1 (cone pigments), short-wave-sensitive 2
chr1_+_45925365 0.08 ENSDART00000144245
eif5b
eukaryotic translation initiation factor 5B
chr11_-_40101246 0.08 ENSDART00000161083
tnfrsf9b
tumor necrosis factor receptor superfamily, member 9b
chr2_-_10896745 0.07 ENSDART00000114609
cdcp2
CUB domain containing protein 2
chr1_+_45925150 0.07 ENSDART00000074689
eif5b
eukaryotic translation initiation factor 5B
chr21_-_5879897 0.07 ENSDART00000184034
rpl35
ribosomal protein L35
chr5_-_15321451 0.07 ENSDART00000139203
txnrd2.1
thioredoxin reductase 2, tandem duplicate 1
chr8_-_34762163 0.06 ENSDART00000114080
setd1bb
SET domain containing 1B, b
chr23_+_9067131 0.06 ENSDART00000144533
ccm2l
cerebral cavernous malformation 2-like
chr8_-_14067517 0.06 ENSDART00000140948
dedd
death effector domain containing
chr6_+_16982613 0.06 ENSDART00000156104
pimr8
Pim proto-oncogene, serine/threonine kinase, related 8
chr7_+_4671483 0.05 ENSDART00000111390
si:ch211-225k7.6
si:ch211-225k7.6
chr13_-_31296358 0.04 ENSDART00000030946
prdm8
PR domain containing 8
chr23_+_2914577 0.04 ENSDART00000184897
DHX35
zgc:158828
chr5_-_23696926 0.04 ENSDART00000021462
rnf128a
ring finger protein 128a
chr14_+_18785727 0.04 ENSDART00000184452
si:ch211-111e20.1
si:ch211-111e20.1
chr18_+_46773198 0.04 ENSDART00000174647
CABZ01041495.1

chr7_-_12596727 0.04 ENSDART00000186413
adamtsl3
ADAMTS-like 3
chr17_+_1360192 0.03 ENSDART00000184561
siva1
SIVA1, apoptosis-inducing factor
chr7_-_9674073 0.03 ENSDART00000187902
lrrk1
leucine-rich repeat kinase 1
chr5_-_26181863 0.03 ENSDART00000098500
ccdc125
coiled-coil domain containing 125
chr6_+_30456788 0.02 ENSDART00000121492
FP236735.1

chr20_-_2134620 0.02 ENSDART00000064375
tmem244
transmembrane protein 244
chr5_+_53482597 0.02 ENSDART00000180333
BX323994.1

chr24_-_25184553 0.02 ENSDART00000166917
plcxd2
phosphatidylinositol-specific phospholipase C, X domain containing 2
chr4_-_71177920 0.02 ENSDART00000158287
si:dkey-193i10.1
si:dkey-193i10.1
chr3_+_16663373 0.01 ENSDART00000100961
zgc:55558
zgc:55558
chr13_+_25486608 0.01 ENSDART00000057689
bag3
BCL2 associated athanogene 3
chr4_-_31700186 0.01 ENSDART00000183986
ENSDART00000180890
si:dkey-16p6.1
si:dkey-16p6.1
chr4_-_75616197 0.01 ENSDART00000157778
si:dkey-71l4.3
si:dkey-71l4.3
chr5_+_6670945 0.00 ENSDART00000185686
pxna
paxillin a
chr11_-_40257225 0.00 ENSDART00000139009
TRIM62 (1 of many)
si:ch211-193i15.2

Network of associatons between targets according to the STRING database.

First level regulatory network of twist1a+twist1b+twist3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0006480 N-terminal protein amino acid methylation(GO:0006480)
0.1 0.5 GO:1990402 embryonic liver development(GO:1990402)
0.0 0.3 GO:0035092 spermatid nucleus differentiation(GO:0007289) sperm chromatin condensation(GO:0035092) spermatogenesis, exchange of chromosomal proteins(GO:0035093)
0.0 0.1 GO:0006691 leukotriene metabolic process(GO:0006691) leukotriene biosynthetic process(GO:0019370)
0.0 0.1 GO:1903798 regulation of production of small RNA involved in gene silencing by RNA(GO:0070920) regulation of production of miRNAs involved in gene silencing by miRNA(GO:1903798)
0.0 0.1 GO:0032207 regulation of telomere maintenance via recombination(GO:0032207) negative regulation of telomere maintenance via recombination(GO:0032208)
0.0 0.1 GO:0008592 regulation of Toll signaling pathway(GO:0008592)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:1990111 spermatoproteasome complex(GO:1990111)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0071885 N-terminal protein N-methyltransferase activity(GO:0071885)
0.1 0.3 GO:0004142 diacylglycerol cholinephosphotransferase activity(GO:0004142)
0.0 0.1 GO:0004464 leukotriene-C4 synthase activity(GO:0004464)
0.0 0.3 GO:0016504 peptidase activator activity(GO:0016504)
0.0 0.2 GO:0051371 muscle alpha-actinin binding(GO:0051371) alpha-actinin binding(GO:0051393)
0.0 0.1 GO:0098505 G-rich strand telomeric DNA binding(GO:0098505)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE Genes involved in Amino acid transport across the plasma membrane
0.0 0.3 REACTOME SYNTHESIS OF PC Genes involved in Synthesis of PC
0.0 0.1 REACTOME GLUTATHIONE CONJUGATION Genes involved in Glutathione conjugation