GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Batf Links NCBI RGD Ensembl	ENSRNOG00000008588	basic leucine zipper ATF-like transcription factor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Batf	rn6_v1_chr6_+_109562587_109562587	0.37	5.4e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_+_28654733 Show fit	0.20	ENSRNOT00000006174	Pmch Links NCBI RGD Ensembl Show fit	pro-melanin-concentrating hormone
chr17_+_43357888 Show fit	0.07	ENSRNOT00000022329	Scgn Links NCBI RGD Ensembl Show fit	secretagogin, EF-hand calcium binding protein
chr17_-_22143324 Show fit	0.05	ENSRNOT00000019361	Edn1 Links NCBI RGD Ensembl Show fit	endothelin 1
chr19_+_37235001 Show fit	0.04	ENSRNOT00000020908	Nol3 Links NCBI RGD Ensembl Show fit	nucleolar protein 3
chr10_+_69423086 Show fit	0.04	ENSRNOT00000000256	Ccl7 Links NCBI RGD Ensembl Show fit	C-C motif chemokine ligand 7
chr3_+_117416345 Show fit	0.03	ENSRNOT00000056054	Ctxn2 Links NCBI RGD Ensembl Show fit	cortexin 2
chr10_+_89635675 Show fit	0.03	ENSRNOT00000028179	RGD1561590 Links NCBI RGD Ensembl Show fit	similar to SAP18
chr2_-_251970768 Show fit	0.02	ENSRNOT00000020141	Wdr63 Links NCBI RGD Ensembl Show fit	WD repeat domain 63
chr10_-_83655182 Show fit	0.02	ENSRNOT00000007897	Abi3 Links NCBI RGD Ensembl Show fit	ABI family, member 3
chr6_+_136358057 Show fit	0.02	ENSRNOT00000092741	Klc1 Links NCBI RGD Ensembl Show fit	kinesin light chain 1
chr2_+_144861455 Show fit	0.02	ENSRNOT00000093284 ENSRNOT00000019748 ENSRNOT00000072110	Dclk1 Links NCBI RGD Ensembl Show fit	doublecortin-like kinase 1
chr1_+_188288738 Show fit	0.02	ENSRNOT00000055103	Tmc5 Links NCBI RGD Ensembl Show fit	transmembrane channel-like 5
chr5_+_154265097 Show fit	0.02	ENSRNOT00000012342	Cnr2 Links NCBI RGD Ensembl Show fit	cannabinoid receptor 2
chr3_+_43271596 Show fit	0.02	ENSRNOT00000088589	Gpd2 Links NCBI RGD Ensembl Show fit	glycerol-3-phosphate dehydrogenase 2
chrX_+_111798233 Show fit	0.02	ENSRNOT00000078582	Prps1 Links NCBI RGD Ensembl Show fit	phosphoribosyl pyrophosphate synthetase 1
chrX_+_104734082 Show fit	0.02	ENSRNOT00000005020	Srpx2 Links NCBI RGD Ensembl Show fit	sushi-repeat-containing protein, X-linked 2
chr2_-_227207584 Show fit	0.01	ENSRNOT00000065361 ENSRNOT00000080215	Myoz2 Links NCBI RGD Ensembl Show fit	myozenin 2
chrX_+_43625169 Show fit	0.01	ENSRNOT00000086311	Sat1 Links NCBI RGD Ensembl Show fit	spermidine/spermine N1-acetyl transferase 1
chr1_+_157646173 Show fit	0.01	ENSRNOT00000013851	Rab30 Links NCBI RGD Ensembl Show fit	RAB30, member RAS oncogene family
chr13_-_69984785 Show fit	0.01	ENSRNOT00000083995	Rgl1 Links NCBI RGD Ensembl Show fit	ral guanine nucleotide dissociation stimulator,-like 1
chr8_+_5606592 Show fit	0.01	ENSRNOT00000011727	Mmp12 Links NCBI RGD Ensembl Show fit	matrix metallopeptidase 12
chr14_-_81053905 Show fit	0.01	ENSRNOT00000045068 ENSRNOT00000040215	Rgs12 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 12
chr3_-_29984201 Show fit	0.01	ENSRNOT00000006350	Zeb2 Links NCBI RGD Ensembl Show fit	zinc finger E-box binding homeobox 2
chr16_-_9430743 Show fit	0.01	ENSRNOT00000043811	Wdfy4 Links NCBI RGD Ensembl Show fit	WDFY family member 4
chr14_-_85484275 Show fit	0.01	ENSRNOT00000083770	Kremen1 Links NCBI RGD Ensembl Show fit	kringle containing transmembrane protein 1
chr13_-_90977734 Show fit	0.01	ENSRNOT00000011869	Slamf8 Links NCBI RGD Ensembl Show fit	SLAM family member 8
chr1_-_248213740 Show fit	0.01	ENSRNOT00000048735	AABR07006688.1 Links NCBI RGD Ensembl Show fit
chr3_-_127500709 Show fit	0.01	ENSRNOT00000006330	Hao1 Links NCBI RGD Ensembl Show fit	hydroxyacid oxidase 1
chr2_+_222214885 Show fit	0.01	ENSRNOT00000055723	Dpyd Links NCBI RGD Ensembl Show fit	dihydropyrimidine dehydrogenase
chrM_+_7919 Show fit	0.01	ENSRNOT00000046108	Mt-atp6 Links NCBI RGD Ensembl Show fit	mitochondrially encoded ATP synthase 6
chrM_+_7758 Show fit	0.01	ENSRNOT00000046201	Mt-atp8 Links NCBI RGD Ensembl Show fit	mitochondrially encoded ATP synthase 8
chr7_+_145068286 Show fit	0.01	ENSRNOT00000088956 ENSRNOT00000065753	Nckap1l Links NCBI RGD Ensembl Show fit	NCK associated protein 1 like
chr2_-_149417212 Show fit	0.01	ENSRNOT00000018573	Gpr87 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 87
chr1_+_199555722 Show fit	0.01	ENSRNOT00000054983	Itgax Links NCBI RGD Ensembl Show fit	integrin subunit alpha X
chr4_-_138830117 Show fit	0.01	ENSRNOT00000008403	Il5ra Links NCBI RGD Ensembl Show fit	interleukin 5 receptor subunit alpha
chr4_-_164051812 Show fit	0.01	ENSRNOT00000085719	AABR07062183.1 Links NCBI RGD Ensembl Show fit
chr5_-_64702892 Show fit	0.01	ENSRNOT00000078547	Acnat2 Links NCBI RGD Ensembl Show fit	acyl-coenzyme A amino acid N-acyltransferase 2
chr5_-_163231494 Show fit	0.01	ENSRNOT00000085929 ENSRNOT00000022968	Tnfrsf8 Links NCBI RGD Ensembl Show fit	TNF receptor superfamily member 8
chr14_-_6148830 Show fit	0.01	ENSRNOT00000075091 ENSRNOT00000092683	LOC100366030 Links NCBI RGD Ensembl Show fit	rCG37858-like
chr2_-_155381839 Show fit	0.01	ENSRNOT00000057657	Vom2r47 Links NCBI RGD Ensembl Show fit	vomeronasal 2 receptor, 47
chr14_-_2934571 Show fit	0.01	ENSRNOT00000049772	Ube2d4 Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2D 4 (putative)
chr14_+_91557601 Show fit	0.01	ENSRNOT00000038733	RGD1309870 Links NCBI RGD Ensembl Show fit	hypothetical LOC289778
chr5_+_64476317 Show fit	0.01	ENSRNOT00000017217	LOC108348074 Links NCBI RGD Ensembl Show fit	collagen alpha-1(XV) chain-like
chr4_+_3043231 Show fit	0.01	ENSRNOT00000013732	Il6 Links NCBI RGD Ensembl Show fit	interleukin 6
chr2_+_166856784 Show fit	0.00	ENSRNOT00000035765	Otol1 Links NCBI RGD Ensembl Show fit	otolin 1
chr9_-_113328428 Show fit	0.00	ENSRNOT00000086340	Vapa Links NCBI RGD Ensembl Show fit	VAMP associated protein A
chr18_-_1389929 Show fit	0.00	ENSRNOT00000051362	Rock1 Links NCBI RGD Ensembl Show fit	Rho-associated coiled-coil containing protein kinase 1
chr3_-_161812243 Show fit	0.00	ENSRNOT00000025238 ENSRNOT00000087646	Slc35c2 Links NCBI RGD Ensembl Show fit	solute carrier family 35 member C2
chr8_+_5522739 Show fit	0.00	ENSRNOT00000011507	Mmp13 Links NCBI RGD Ensembl Show fit	matrix metallopeptidase 13
chr2_-_122756842 Show fit	0.00	ENSRNOT00000080181	Ccdc144b Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 144B
chr2_+_243425007 Show fit	0.00	ENSRNOT00000082894	Trmt10a Links NCBI RGD Ensembl Show fit	tRNA methyltransferase 10A
chr1_+_46230557 Show fit	0.00	ENSRNOT00000092849	Arid1b Links NCBI RGD Ensembl Show fit	AT-rich interaction domain 1B
chr2_-_177950517 Show fit	0.00	ENSRNOT00000012792	Rapgef2 Links NCBI RGD Ensembl Show fit	Rap guanine nucleotide exchange factor 2
chr1_-_98486976 Show fit	0.00	ENSRNOT00000024083	Etfb Links NCBI RGD Ensembl Show fit	electron transfer flavoprotein beta subunit
chr2_+_118547190 Show fit	0.00	ENSRNOT00000083676 ENSRNOT00000090301 ENSRNOT00000013410	Kcnmb2 Links NCBI RGD Ensembl Show fit	potassium calcium-activated channel subfamily M regulatory beta subunit 2
chr16_+_68633720 Show fit	0.00	ENSRNOT00000081838	LOC100911229 Links NCBI RGD Ensembl Show fit	sperm motility kinase-like
chr1_-_101741441 Show fit	0.00	ENSRNOT00000028570	Sult2b1 Links NCBI RGD Ensembl Show fit	sulfotransferase family 2B member 1
chr13_-_71276497 Show fit	0.00	ENSRNOT00000029773	Rgsl1 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling like 1
chr2_-_123972356 Show fit	0.00	ENSRNOT00000023348	Il21 Links NCBI RGD Ensembl Show fit	interleukin 21
chr15_+_45834302 Show fit	0.00	ENSRNOT00000051307	Serpine3 Links NCBI RGD Ensembl Show fit	serpin family E member 3
chrX_-_104932508 Show fit	0.00	ENSRNOT00000075325	Nox1 Links NCBI RGD Ensembl Show fit	NADPH oxidase 1
chr2_+_153803349 Show fit	0.00	ENSRNOT00000088565	Mme Links NCBI RGD Ensembl Show fit	membrane metallo-endopeptidase
chr3_-_80349145 Show fit	0.00	ENSRNOT00000040633	RGD1309540 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein MGC40841; similar to hypothetical protein MGC4707
chr10_-_85084850 Show fit	0.00	ENSRNOT00000012462	Tbkbp1 Links NCBI RGD Ensembl Show fit	TBK1 binding protein 1
chr3_-_48535909 Show fit	0.00	ENSRNOT00000008148	Fap Links NCBI RGD Ensembl Show fit	fibroblast activation protein, alpha
chr1_+_220335254 Show fit	0.00	ENSRNOT00000072261	Rin1 Links NCBI RGD Ensembl Show fit	Ras and Rab interactor 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0032227	negative regulation of synaptic transmission, dopaminergic(GO:0032227)
0.0	0.1	GO:0031583	phospholipase D-activating G-protein coupled receptor signaling pathway(GO:0031583)
0.0	0.0	GO:0014736	negative regulation of muscle atrophy(GO:0014736)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0031708	endothelin B receptor binding(GO:0031708)