GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_-_71849293 Show fit	0.57	ENSRNOT00000003799	Lhx1 Links NCBI RGD Ensembl Show fit	LIM homeobox 1
chr7_+_28654733 Show fit	0.49	ENSRNOT00000006174	Pmch Links NCBI RGD Ensembl Show fit	pro-melanin-concentrating hormone
chr7_+_120580743 Show fit	0.40	ENSRNOT00000017181	Maff Links NCBI RGD Ensembl Show fit	MAF bZIP transcription factor F
chr10_-_90307658 Show fit	0.39	ENSRNOT00000092102	Slc4a1 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 1
chr16_-_20807070 Show fit	0.37	ENSRNOT00000072536	Comp Links NCBI RGD Ensembl Show fit	cartilage oligomeric matrix protein
chr1_-_215536980 Show fit	0.27	ENSRNOT00000027344	Ifitm10 Links NCBI RGD Ensembl Show fit	interferon induced transmembrane protein 10
chr4_+_152630469 Show fit	0.20	ENSRNOT00000013721	Ninj2 Links NCBI RGD Ensembl Show fit	ninjurin 2
chr10_+_103395511 Show fit	0.20	ENSRNOT00000004256	Gprc5c Links NCBI RGD Ensembl Show fit	G protein-coupled receptor, class C, group 5, member C
chr7_-_107775712 Show fit	0.18	ENSRNOT00000010811 ENSRNOT00000093459	Ndrg1 Links NCBI RGD Ensembl Show fit	N-myc downstream regulated 1
chr8_+_94686938 Show fit	0.17	ENSRNOT00000013285	Ripply2 Links NCBI RGD Ensembl Show fit	ripply transcriptional repressor 2
chr10_+_56662242 Show fit	0.17	ENSRNOT00000086919	Asgr1 Links NCBI RGD Ensembl Show fit	asialoglycoprotein receptor 1
chr3_+_149624712 Show fit	0.15	ENSRNOT00000018581	Bpifa1 Links NCBI RGD Ensembl Show fit	BPI fold containing family A, member 1
chr1_-_156327352 Show fit	0.14	ENSRNOT00000074282	LOC100911776 Links NCBI RGD Ensembl Show fit	coiled-coil domain-containing protein 89-like
chr1_-_20417637 Show fit	0.14	ENSRNOT00000036049	RGD1559962 Links NCBI RGD Ensembl Show fit	similar to High mobility group protein 2 (HMG-2)
chr4_+_57855416 Show fit	0.13	ENSRNOT00000029608	Cpa2 Links NCBI RGD Ensembl Show fit	carboxypeptidase A2
chr1_+_154606490 Show fit	0.13	ENSRNOT00000024095	Ccdc89 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 89
chr4_-_176528110 Show fit	0.11	ENSRNOT00000049569	Slco1a2 Links NCBI RGD Ensembl Show fit	solute carrier organic anion transporter family, member 1A2
chr8_+_99568958 Show fit	0.10	ENSRNOT00000073400	Plscr5 Links NCBI RGD Ensembl Show fit	phospholipid scramblase family, member 5
chr2_-_123972356 Show fit	0.10	ENSRNOT00000023348	Il21 Links NCBI RGD Ensembl Show fit	interleukin 21
chr6_-_44363915 Show fit	0.09	ENSRNOT00000085925	Id2 Links NCBI RGD Ensembl Show fit	inhibitor of DNA binding 2, HLH protein
chr1_+_274049533 Show fit	0.08	ENSRNOT00000076779 ENSRNOT00000042822	Mxi1 Links NCBI RGD Ensembl Show fit	MAX interactor 1, dimerization protein
chr18_+_68408890 Show fit	0.08	ENSRNOT00000039702	Ccdc68 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 68
chr20_+_46429222 Show fit	0.08	ENSRNOT00000076818	Foxo3 Links NCBI RGD Ensembl Show fit	forkhead box O3
chr2_-_3124543 Show fit	0.08	ENSRNOT00000036547	Fam81b Links NCBI RGD Ensembl Show fit	family with sequence similarity 81, member B
chr1_-_214455039 Show fit	0.07	ENSRNOT00000071028	Polr2l Links NCBI RGD Ensembl Show fit	RNA polymerase II subunit L
chr3_-_60023913 Show fit	0.07	ENSRNOT00000064662	Cir1 Links NCBI RGD Ensembl Show fit	corepressor interacting with RBPJ, 1
chr3_-_168018410 Show fit	0.06	ENSRNOT00000087579	Bcas1 Links NCBI RGD Ensembl Show fit	breast carcinoma amplified sequence 1
chr13_-_80862963 Show fit	0.06	ENSRNOT00000004864	Fmo3 Links NCBI RGD Ensembl Show fit	flavin containing monooxygenase 3
chr10_+_72909550 Show fit	0.06	ENSRNOT00000004540	Ppm1d Links NCBI RGD Ensembl Show fit	protein phosphatase, Mg2+/Mn2+ dependent, 1D
chr4_+_71512695 Show fit	0.06	ENSRNOT00000037220	Tas2r139 Links NCBI RGD Ensembl Show fit	taste receptor, type 2, member 139
chr14_+_42714315 Show fit	0.05	ENSRNOT00000084095 ENSRNOT00000091449	Phox2b Links NCBI RGD Ensembl Show fit	paired-like homeobox 2b
chr5_+_164923302 Show fit	0.05	ENSRNOT00000042285	LOC108349682 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L35a
chr6_-_77421286 Show fit	0.05	ENSRNOT00000011453	Nkx2-1 Links NCBI RGD Ensembl Show fit	NK2 homeobox 1
chr2_+_157316266 Show fit	0.04	ENSRNOT00000015387	Tiparp Links NCBI RGD Ensembl Show fit	TCDD-inducible poly(ADP-ribose) polymerase
chr2_+_200603426 Show fit	0.04	ENSRNOT00000072189	LOC102550892 Links NCBI RGD Ensembl Show fit	zinc finger protein 697-like
chr20_+_29655226 Show fit	0.04	ENSRNOT00000089059	Spock2 Links NCBI RGD Ensembl Show fit	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2
chr20_-_11721838 Show fit	0.04	ENSRNOT00000001636	Ube2g2 Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2G 2
chr2_-_100249811 Show fit	0.04	ENSRNOT00000086760	Hnf4g Links NCBI RGD Ensembl Show fit	hepatocyte nuclear factor 4, gamma
chr4_-_183426439 Show fit	0.04	ENSRNOT00000083310	Fam60a Links NCBI RGD Ensembl Show fit	family with sequence similarity 60, member A
chr6_-_137084739 Show fit	0.03	ENSRNOT00000060943	Tmem179 Links NCBI RGD Ensembl Show fit	transmembrane protein 179
chr1_-_101773508 Show fit	0.03	ENSRNOT00000067430	Sult2b1 Links NCBI RGD Ensembl Show fit	sulfotransferase family 2B member 1
chr1_-_102970950 Show fit	0.03	ENSRNOT00000018194	Tsg101 Links NCBI RGD Ensembl Show fit	tumor susceptibility 101
chr6_+_137243185 Show fit	0.03	ENSRNOT00000030879	Zbtb42 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 42
chr5_+_64282351 Show fit	0.03	ENSRNOT00000011273	Msantd3 Links NCBI RGD Ensembl Show fit	Myb/SANT DNA binding domain containing 3
chr4_+_153921115 Show fit	0.03	ENSRNOT00000018821	Slc6a12 Links NCBI RGD Ensembl Show fit	solute carrier family 6 member 12
chr16_-_19583386 Show fit	0.03	ENSRNOT00000090131	Zfp617 Links NCBI RGD Ensembl Show fit	zinc finger protein 617
chr13_-_97838228 Show fit	0.03	ENSRNOT00000003618	Tfb2m Links NCBI RGD Ensembl Show fit	transcription factor B2, mitochondrial
chr15_-_28313841 Show fit	0.03	ENSRNOT00000085897	Ndrg2 Links NCBI RGD Ensembl Show fit	NDRG family member 2
chr14_-_8432195 Show fit	0.03	ENSRNOT00000089800	Arhgap24 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 24
chr1_-_206282575 Show fit	0.03	ENSRNOT00000024974	Adam12 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase domain 12
chr3_-_101474890 Show fit	0.02	ENSRNOT00000091869	Bbox1 Links NCBI RGD Ensembl Show fit	gamma-butyrobetaine hydroxylase 1
chr4_+_14071507 Show fit	0.02	ENSRNOT00000066224 ENSRNOT00000075962	Cd36 Links NCBI RGD Ensembl Show fit RGD1565355 Links NCBI RGD Ensembl Show fit	CD36 molecule similar to fatty acid translocase/CD36
chr1_+_264741911 Show fit	0.02	ENSRNOT00000019956	Sema4g Links NCBI RGD Ensembl Show fit	semaphorin 4G
chr10_-_56849255 Show fit	0.02	ENSRNOT00000025491	RGD1308134 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 1110020A23
chr3_-_72219246 Show fit	0.02	ENSRNOT00000009903	Smtnl1 Links NCBI RGD Ensembl Show fit	smoothelin-like 1
chr1_-_90978907 Show fit	0.02	ENSRNOT00000072819	Clip3 Links NCBI RGD Ensembl Show fit	CAP-GLY domain containing linker protein 3
chr14_-_3351553 Show fit	0.02	ENSRNOT00000061556	Btbd8 Links NCBI RGD Ensembl Show fit	BTB (POZ) domain containing 8
chr17_-_15478343 Show fit	0.02	ENSRNOT00000078029	Omd Links NCBI RGD Ensembl Show fit	osteomodulin
chr12_-_13998172 Show fit	0.02	ENSRNOT00000001476	Wipi2 Links NCBI RGD Ensembl Show fit	WD repeat domain, phosphoinositide interacting 2
chrX_+_83926513 Show fit	0.02	ENSRNOT00000035274	RGD1561958 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 2010106E10
chr1_-_99135977 Show fit	0.02	ENSRNOT00000056515	Vom2r38 Links NCBI RGD Ensembl Show fit	vomeronasal 2 receptor, 38
chr8_-_78233430 Show fit	0.02	ENSRNOT00000083220	Cgnl1 Links NCBI RGD Ensembl Show fit	cingulin-like 1
chr17_-_45746753 Show fit	0.02	ENSRNOT00000077475	RGD1564243 Links NCBI RGD Ensembl Show fit	similar to brain Zn-finger protein
chr8_+_5522739 Show fit	0.02	ENSRNOT00000011507	Mmp13 Links NCBI RGD Ensembl Show fit	matrix metallopeptidase 13
chr3_-_160038078 Show fit	0.01	ENSRNOT00000013445	Serinc3 Links NCBI RGD Ensembl Show fit	serine incorporator 3
chr5_-_173484986 Show fit	0.01	ENSRNOT00000064207 ENSRNOT00000055319	Ttll10 Links NCBI RGD Ensembl Show fit	tubulin tyrosine ligase like 10
chr6_+_91595823 Show fit	0.01	ENSRNOT00000006223	Klhdc2 Links NCBI RGD Ensembl Show fit	kelch domain containing 2
chr18_+_13386133 Show fit	0.01	ENSRNOT00000020661	Asxl3 Links NCBI RGD Ensembl Show fit	additional sex combs like 3, transcriptional regulator
chr13_+_53351717 Show fit	0.01	ENSRNOT00000012038	Kif14 Links NCBI RGD Ensembl Show fit	kinesin family member 14
chr5_-_101006375 Show fit	0.01	ENSRNOT00000014008	Cer1 Links NCBI RGD Ensembl Show fit	cerberus 1, DAN family BMP antagonist
chr7_-_57816621 Show fit	0.01	ENSRNOT00000090748	AABR07057150.1 Links NCBI RGD Ensembl Show fit
chr7_+_93975451 Show fit	0.01	ENSRNOT00000011379	Colec10 Links NCBI RGD Ensembl Show fit	collectin subfamily member 10
chr7_+_74047814 Show fit	0.01	ENSRNOT00000014879	Osr2 Links NCBI RGD Ensembl Show fit	odd-skipped related transciption factor 2
chr1_-_100845392 Show fit	0.01	ENSRNOT00000027436	Tbc1d17 Links NCBI RGD Ensembl Show fit	TBC1 domain family, member 17
chr14_+_37116492 Show fit	0.00	ENSRNOT00000002921	Sgcb Links NCBI RGD Ensembl Show fit	sarcoglycan, beta
chr15_+_32894938 Show fit	0.00	ENSRNOT00000012837	Abhd4 Links NCBI RGD Ensembl Show fit	abhydrolase domain containing 4
chr1_+_100845563 Show fit	0.00	ENSRNOT00000027478	Akt1s1 Links NCBI RGD Ensembl Show fit	AKT1 substrate 1
chr10_-_56850085 Show fit	0.00	ENSRNOT00000025767	Rnasek Links NCBI RGD Ensembl Show fit	ribonuclease K
chr2_-_182035032 Show fit	0.00	ENSRNOT00000009813	Fgb Links NCBI RGD Ensembl Show fit	fibrinogen beta chain
chr3_-_173944396 Show fit	0.00	ENSRNOT00000079019	Sycp2 Links NCBI RGD Ensembl Show fit	synaptonemal complex protein 2
chr3_+_126335863 Show fit	0.00	ENSRNOT00000028904	Bmp2 Links NCBI RGD Ensembl Show fit	bone morphogenetic protein 2
chr5_+_124300477 Show fit	0.00	ENSRNOT00000010100	C8b Links NCBI RGD Ensembl Show fit	complement C8 beta chain

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.6	GO:0060066	metanephric part of ureteric bud development(GO:0035502) oviduct development(GO:0060066)
0.1	0.5	GO:0032227	negative regulation of synaptic transmission, dopaminergic(GO:0032227)
0.1	0.4	GO:0010037	response to carbon dioxide(GO:0010037)
0.1	0.2	GO:0050828	regulation of liquid surface tension(GO:0050828)
0.0	0.1	GO:0001966	thigmotaxis(GO:0001966)
0.0	0.4	GO:0003417	growth plate cartilage development(GO:0003417)
0.0	0.1	GO:0048880	medulla oblongata development(GO:0021550) sensory system development(GO:0048880)
0.0	0.1	GO:0002729	positive regulation of natural killer cell cytokine production(GO:0002729)
0.0	0.2	GO:0032287	peripheral nervous system myelin maintenance(GO:0032287)
0.0	0.2	GO:0032525	somite rostral/caudal axis specification(GO:0032525)
0.0	0.0	GO:0090361	platelet-derived growth factor production(GO:0090360) regulation of platelet-derived growth factor production(GO:0090361)
0.0	0.1	GO:0071386	cellular response to corticosterone stimulus(GO:0071386)
0.0	0.1	GO:0070327	thyroid hormone transport(GO:0070327)
0.0	0.0	GO:1903774	positive regulation of viral budding via host ESCRT complex(GO:1903774)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0005499	vitamin D binding(GO:0005499)
0.0	0.1	GO:0044378	non-sequence-specific DNA binding, bending(GO:0044378)
0.0	0.1	GO:0005134	interleukin-2 receptor binding(GO:0005134)
0.0	0.4	GO:0015106	bicarbonate transmembrane transporter activity(GO:0015106)
0.0	0.1	GO:0015349	thyroid hormone transmembrane transporter activity(GO:0015349)
0.0	0.5	GO:0071855	neuropeptide receptor binding(GO:0071855)
0.0	0.0	GO:0050294	steroid sulfotransferase activity(GO:0050294)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME RECYCLING OF BILE ACIDS AND SALTS	Genes involved in Recycling of bile acids and salts