GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hoxa1 Links NCBI RGD Ensembl	ENSRNOG00000005628	homeo box A1

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_-_96131880 Show fit	0.32	ENSRNOT00000004578	Cacng5 Links NCBI RGD Ensembl Show fit	calcium voltage-gated channel auxiliary subunit gamma 5
chr5_-_155381732 Show fit	0.17	ENSRNOT00000033670	Zbtb40 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 40
chr7_+_70753101 Show fit	0.16	ENSRNOT00000090001	R3hdm2 Links NCBI RGD Ensembl Show fit	R3H domain containing 2
chr1_-_260992291 Show fit	0.16	ENSRNOT00000035415 ENSRNOT00000034758	Slit1 Links NCBI RGD Ensembl Show fit	slit guidance ligand 1
chr12_+_13810180 Show fit	0.15	ENSRNOT00000084865 ENSRNOT00000038203	Tnrc18 Links NCBI RGD Ensembl Show fit	trinucleotide repeat containing 18
chr3_+_154863072 Show fit	0.15	ENSRNOT00000055200	Snhg11 Links NCBI RGD Ensembl Show fit	small nucleolar RNA host gene 11
chr16_+_46731403 Show fit	0.13	ENSRNOT00000017624	Tenm3 Links NCBI RGD Ensembl Show fit	teneurin transmembrane protein 3
chr1_-_267245636 Show fit	0.13	ENSRNOT00000082799	Sh3pxd2a Links NCBI RGD Ensembl Show fit	SH3 and PX domains 2A
chr8_+_127171537 Show fit	0.12	ENSRNOT00000078625 ENSRNOT00000051290 ENSRNOT00000087753	Golga4 Links NCBI RGD Ensembl Show fit	golgin A4
chr15_+_51756978 Show fit	0.12	ENSRNOT00000024067	Egr3 Links NCBI RGD Ensembl Show fit	early growth response 3
chr3_-_133122691 Show fit	0.11	ENSRNOT00000083637	Tasp1 Links NCBI RGD Ensembl Show fit	taspase 1
chr9_-_52238564 Show fit	0.11	ENSRNOT00000005073	Col5a2 Links NCBI RGD Ensembl Show fit	collagen type V alpha 2 chain
chr13_+_46169963 Show fit	0.11	ENSRNOT00000005212	Thsd7b Links NCBI RGD Ensembl Show fit	thrombospondin type 1 domain containing 7B
chr9_+_118849302 Show fit	0.11	ENSRNOT00000087592	Dlgap1 Links NCBI RGD Ensembl Show fit	DLG associated protein 1
chr3_-_158328881 Show fit	0.09	ENSRNOT00000044466	Ptprt Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, receptor type, T
chr7_+_124680294 Show fit	0.09	ENSRNOT00000014720	Mpped1 Links NCBI RGD Ensembl Show fit	metallophosphoesterase domain containing 1
chr13_+_50974872 Show fit	0.09	ENSRNOT00000080768	Chit1 Links NCBI RGD Ensembl Show fit	chitinase 1
chr19_-_50220455 Show fit	0.08	ENSRNOT00000079760	Sdr42e1 Links NCBI RGD Ensembl Show fit	short chain dehydrogenase/reductase family 42E, member 1
chr9_-_88256115 Show fit	0.07	ENSRNOT00000076472	Col4a4 Links NCBI RGD Ensembl Show fit	collagen type IV alpha 4 chain
chr15_+_41448064 Show fit	0.07	ENSRNOT00000019551	Sacs Links NCBI RGD Ensembl Show fit	sacsin molecular chaperone
chr17_-_66397653 Show fit	0.07	ENSRNOT00000024098	Actn2 Links NCBI RGD Ensembl Show fit	actinin alpha 2
chr16_-_62241361 Show fit	0.07	ENSRNOT00000090036	Gsr Links NCBI RGD Ensembl Show fit	glutathione-disulfide reductase
chr10_+_42614713 Show fit	0.06	ENSRNOT00000081136 ENSRNOT00000073148	Gria1 Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor AMPA type subunit 1
chrX_+_82143789 Show fit	0.06	ENSRNOT00000003724	Pou3f4 Links NCBI RGD Ensembl Show fit	POU class 3 homeobox 4
chr8_+_82257849 Show fit	0.06	ENSRNOT00000011963 ENSRNOT00000075708	Gnb5 Links NCBI RGD Ensembl Show fit	G protein subunit beta 5
chr4_-_155275161 Show fit	0.06	ENSRNOT00000032690	Rimklb Links NCBI RGD Ensembl Show fit	ribosomal modification protein rimK-like family member B
chr7_+_123482255 Show fit	0.06	ENSRNOT00000064487	LOC688613 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC688613
chr17_+_4846789 Show fit	0.06	ENSRNOT00000073271	Gas1 Links NCBI RGD Ensembl Show fit	growth arrest-specific 1
chr1_-_222350173 Show fit	0.05	ENSRNOT00000030625	Flrt1 Links NCBI RGD Ensembl Show fit	fibronectin leucine rich transmembrane protein 1
chr6_+_26566494 Show fit	0.05	ENSRNOT00000079292	Gtf3c2 Links NCBI RGD Ensembl Show fit	general transcription factor IIIC subunit 2
chr10_-_14443010 Show fit	0.05	ENSRNOT00000022142	Tmem204 Links NCBI RGD Ensembl Show fit	transmembrane protein 204
chr20_-_31956649 Show fit	0.05	ENSRNOT00000072429	Hk1 Links NCBI RGD Ensembl Show fit	hexokinase 1
chr12_-_37682964 Show fit	0.05	ENSRNOT00000001421	RGD1563482 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ38663
chr12_+_13323547 Show fit	0.05	ENSRNOT00000074138	Zfp853 Links NCBI RGD Ensembl Show fit	zinc finger protein 853
chr19_+_55206455 Show fit	0.05	ENSRNOT00000039273	Zc3h18 Links NCBI RGD Ensembl Show fit	zinc finger CCCH-type containing 18
chr7_-_122963299 Show fit	0.05	ENSRNOT00000090208	Rangap1 Links NCBI RGD Ensembl Show fit	RAN GTPase activating protein 1
chr5_+_124021366 Show fit	0.05	ENSRNOT00000009977	Dab1 Links NCBI RGD Ensembl Show fit	DAB1, reelin adaptor protein
chr2_+_164747677 Show fit	0.04	ENSRNOT00000018489	Mfsd1 Links NCBI RGD Ensembl Show fit	major facilitator superfamily domain containing 1
chr12_+_49419582 Show fit	0.04	ENSRNOT00000082998	RGD1306556 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein A530094D01
chr5_-_126395668 Show fit	0.04	ENSRNOT00000010396	Acot11 Links NCBI RGD Ensembl Show fit	acyl-CoA thioesterase 11
chr19_+_24545318 Show fit	0.04	ENSRNOT00000005071	Clgn Links NCBI RGD Ensembl Show fit	calmegin
chr15_-_88036354 Show fit	0.04	ENSRNOT00000014747	Ednrb Links NCBI RGD Ensembl Show fit	endothelin receptor type B
chr1_-_127292090 Show fit	0.03	ENSRNOT00000016959	Lrrk1 Links NCBI RGD Ensembl Show fit	leucine-rich repeat kinase 1
chr10_-_95062987 Show fit	0.02	ENSRNOT00000019781	Smurf2 Links NCBI RGD Ensembl Show fit	SMAD specific E3 ubiquitin protein ligase 2
chr1_-_7443863 Show fit	0.02	ENSRNOT00000088558	Phactr2 Links NCBI RGD Ensembl Show fit	phosphatase and actin regulator 2
chr13_+_77485113 Show fit	0.02	ENSRNOT00000080254	Tnr Links NCBI RGD Ensembl Show fit	tenascin R
chr13_+_84474319 Show fit	0.02	ENSRNOT00000031367 ENSRNOT00000072244 ENSRNOT00000072897 ENSRNOT00000064168 ENSRNOT00000074954 ENSRNOT00000073696	Ildr2 Links NCBI RGD Ensembl Show fit	immunoglobulin-like domain containing receptor 2
chr13_+_71107465 Show fit	0.02	ENSRNOT00000003239	Rgs8 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 8
chr2_+_3662763 Show fit	0.02	ENSRNOT00000017828	Mctp1 Links NCBI RGD Ensembl Show fit	multiple C2 and transmembrane domain containing 1
chr8_-_2045817 Show fit	0.02	ENSRNOT00000009542 ENSRNOT00000081171 ENSRNOT00000078765	Gria4 Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor AMPA type subunit 4
chr10_+_67427066 Show fit	0.02	ENSRNOT00000035642	Atad5 Links NCBI RGD Ensembl Show fit	ATPase family, AAA domain containing 5
chr5_-_7941822 Show fit	0.01	ENSRNOT00000079917	Prex2 Links NCBI RGD Ensembl Show fit	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
chr12_+_11179329 Show fit	0.01	ENSRNOT00000001302	Zfp394 Links NCBI RGD Ensembl Show fit	zinc finger protein 394
chr14_+_3506339 Show fit	0.01	ENSRNOT00000002867	Tgfbr3 Links NCBI RGD Ensembl Show fit	transforming growth factor beta receptor 3
chr10_-_87153982 Show fit	0.01	ENSRNOT00000014414	Krt222 Links NCBI RGD Ensembl Show fit	keratin 222
chr6_+_145546595 Show fit	0.01	ENSRNOT00000007112	Rapgef5 Links NCBI RGD Ensembl Show fit	Rap guanine nucleotide exchange factor 5
chr12_+_17277635 Show fit	0.01	ENSRNOT00000001734	LOC498154 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC498154
chr4_-_4473307 Show fit	0.01	ENSRNOT00000045773	Dpp6 Links NCBI RGD Ensembl Show fit	dipeptidyl peptidase like 6
chr11_-_64421248 Show fit	0.01	ENSRNOT00000066997	Igsf11 Links NCBI RGD Ensembl Show fit	immunoglobulin superfamily, member 11
chr4_-_184096806 Show fit	0.00	ENSRNOT00000055433	LOC100362344 Links NCBI RGD Ensembl Show fit	mKIAA1238 protein-like
chr10_-_65507581 Show fit	0.00	ENSRNOT00000016759	Supt6h Links NCBI RGD Ensembl Show fit	SPT6 homolog, histone chaperone
chr11_-_25078740 Show fit	0.00	ENSRNOT00000002109	Cyyr1 Links NCBI RGD Ensembl Show fit	cysteine and tyrosine rich 1
chr20_-_6556350 Show fit	0.00	ENSRNOT00000035819	Lemd2 Links NCBI RGD Ensembl Show fit	LEM domain containing 2
chrX_-_104984341 Show fit	0.00	ENSRNOT00000077996	Xkrx Links NCBI RGD Ensembl Show fit	XK related, X-linked
chr15_-_18675431 Show fit	0.00	ENSRNOT00000080794	Abhd6 Links NCBI RGD Ensembl Show fit	abhydrolase domain containing 6
chr17_-_55346279 Show fit	0.00	ENSRNOT00000025037	Svil Links NCBI RGD Ensembl Show fit	supervillin
chr16_+_24980723 Show fit	0.00	ENSRNOT00000082142	Tma16 Links NCBI RGD Ensembl Show fit	translation machinery associated 16 homolog

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0021834	chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration(GO:0021834)
0.0	0.1	GO:1903225	negative regulation of endodermal cell differentiation(GO:1903225)
0.0	0.1	GO:0051695	actin filament uncapping(GO:0051695) positive regulation of endocytic recycling(GO:2001137)
0.0	0.1	GO:0072675	osteoclast fusion(GO:0072675)
0.0	0.1	GO:0006030	chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032)
0.0	0.0	GO:0021589	hindbrain structural organization(GO:0021577) cerebellum structural organization(GO:0021589) neuronal-glial interaction involved in cerebral cortex radial glia guided migration(GO:0021812)
0.0	0.1	GO:0070842	aggresome assembly(GO:0070842)
0.0	0.1	GO:0097264	self proteolysis(GO:0097264)
0.0	0.3	GO:2000311	regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity(GO:2000311)
0.0	0.2	GO:0031507	heterochromatin assembly(GO:0031507)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005588	collagen type V trimer(GO:0005588)
0.0	0.2	GO:0005677	chromatin silencing complex(GO:0005677)
0.0	0.0	GO:1990723	cytoplasmic periphery of the nuclear pore complex(GO:1990723)
0.0	0.4	GO:0032281	AMPA glutamate receptor complex(GO:0032281)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0048495	Roundabout binding(GO:0048495)
0.0	0.1	GO:0072590	N-acetyl-L-aspartate-L-glutamate ligase activity(GO:0072590)
0.0	0.1	GO:0004971	AMPA glutamate receptor activity(GO:0004971)
0.0	0.1	GO:0004568	chitinase activity(GO:0004568)
0.0	0.1	GO:0051373	FATZ binding(GO:0051373)
0.0	0.1	GO:0016176	superoxide-generating NADPH oxidase activator activity(GO:0016176)