rn6_v1_chr4_-_23135354_23135354	0.135294	Aire	ENSRNOT00000011432|Steap4|ENSRNOG00000008602|STEAP4 metalloreductase [Source:RGD Symbol%3BAcc:1560331]
rn6_v1_chr2_+_209661244_209661244	0.121994	Aire	ENSRNOT00000091973|AABR07012826.1|ENSRNOG00000055404|
rn6_v1_chrM_+_9451_9451	0.11719	Aire	ENSRNOT00000041241|Mt-nd3|ENSRNOG00000033615|mitochondrially encoded NADH dehydrogenase 3 [Source:RGD Symbol%3BAcc:620557]
rn6_v1_chrM_+_14136_14136	0.113204	Aire	ENSRNOT00000042098|Mt-cyb|ENSRNOG00000031766|mitochondrially encoded cytochrome b [Source:RGD Symbol%3BAcc:620081]
rn6_v1_chr8_+_52751854_52751854	0.0884086	Aire	ENSRNOT00000072518|Nxpe1|ENSRNOG00000027730|neurexophilin and PC-esterase domain family%2C member 1 [Source:RGD Symbol%3BAcc:1566243]
rn6_v1_chr15_-_83494423_83494423	0.0882904	Aire	ENSRNOT00000037588|Dis3|ENSRNOG00000009125|DIS3 homolog%2C exosome endoribonuclease and 3'-5' exoribonuclease [Source:RGD Symbol%3BAcc:1304646]
rn6_v1_chrM_+_7006_7006	0.0850113	Aire	ENSRNOT00000043693|Mt-co2|ENSRNOG00000030371|mitochondrially encoded cytochrome c oxidase II [Source:RGD Symbol%3BAcc:621872]
rn6_v1_chr18_-_36513317_36513317	0.0840058	Aire	ENSRNOT00000025453|Plac8l1|ENSRNOG00000018820|PLAC8-like 1 [Source:RGD Symbol%3BAcc:1588513]
rn6_v1_chr20_+_34633157_34633157	0.0838288	Aire	ENSRNOT00000000469|Pln|ENSRNOG00000000413|phospholamban [Source:RGD Symbol%3BAcc:619894]
rn6_v1_chr1_-_66212418_66212418	0.0822285	Aire	ENSRNOT00000026074|LOC691722|ENSRNOG00000019280|hypothetical protein LOC691722 [Source:RGD Symbol%3BAcc:1595996]
rn6_v1_chr3_-_161294125_161294125	0.0800623	Aire	ENSRNOT00000021143|Spata25|ENSRNOG00000015744|spermatogenesis associated 25 [Source:RGD Symbol%3BAcc:1564523]
rn6_v1_chrM_+_11736_11736	0.0794607	Aire	ENSRNOT00000048767|Mt-nd5|ENSRNOG00000029971|mitochondrially encoded NADH dehydrogenase 5 [Source:RGD Symbol%3BAcc:620560]
rn6_v1_chr13_-_82129989_82129989	0.0787473	Aire	ENSRNOT00000078963|AC124874.1|ENSRNOG00000057039|
rn6_v1_chrX_+_22285184_22285184	0.0754706	Aire	ENSRNOT00000086262|Iqsec2|ENSRNOG00000058975|IQ motif and Sec7 domain 2 [Source:RGD Symbol%3BAcc:1596452]
rn6_v1_chr2_+_92573004_92573004	0.0708908	Aire	ENSRNOT00000065774|tGap1|ENSRNOG00000022511|GTPase activating protein testicular GAP1 [Source:RGD Symbol%3BAcc:1359558]
rn6_v1_chr3_+_161413298_161413410	0.0691524	Aire	ENSRNOT00000023965|Mmp9|ENSRNOG00000017539|matrix metallopeptidase 9 [Source:RGD Symbol%3BAcc:621320]	ENSRNOT00000088776|Mmp9|ENSRNOG00000017539|matrix metallopeptidase 9 [Source:RGD Symbol%3BAcc:621320]
rn6_v1_chr1_+_141120166_141120166	0.0682094	Aire	ENSRNOT00000050759|Fanci|ENSRNOG00000016689|Fanconi anemia%2C complementation group I [Source:RGD Symbol%3BAcc:2321863]
rn6_v1_chr6_-_99843245_99843245	0.0680455	Aire	ENSRNOT00000080270|Gpx2|ENSRNOG00000055672|glutathione peroxidase 2 [Source:RGD Symbol%3BAcc:727780]
rn6_v1_chr4_-_164123974_164123974	0.0672722	Aire	ENSRNOT00000082447|LOC502907|ENSRNOG00000053661|similar to immunoreceptor Ly49si1 [Source:RGD Symbol%3BAcc:1584856]
rn6_v1_chrM_+_8599_8599	0.0670489	Aire	ENSRNOT00000049683|Mt-cox3|ENSRNOG00000030700|mitochondrially encoded cytochrome C oxidase III [Source:RGD Symbol%3BAcc:621873]
rn6_v1_chrM_-_14061_14061	0.0629005	Aire	ENSRNOT00000051268|Mt-nd6|ENSRNOG00000029042|mitochondrially encoded NADH dehydrogenase 6 [Source:RGD Symbol%3BAcc:620561]
rn6_v1_chr16_-_79671719_79671719	0.0590017	Aire	ENSRNOT00000015908|Myom2|ENSRNOG00000011754|myomesin 2 [Source:RGD Symbol%3BAcc:631437]
rn6_v1_chrX_-_915953_915953	0.0570935	Aire	ENSRNOT00000075264|Spaca5|ENSRNOG00000045622|sperm acrosome associated 5 [Source:RGD Symbol%3BAcc:1584964]
rn6_v1_chr14_+_91557601_91557601	0.0553777	Aire	ENSRNOT00000038733|RGD1309870|ENSRNOG00000037621|hypothetical LOC289778 [Source:RGD Symbol%3BAcc:1309870]
rn6_v1_chr17_+_16455026_16455026	0.0532698	Aire	ENSRNOT00000022932|Zfp169|ENSRNOG00000017092|zinc finger protein 169 [Source:RGD Symbol%3BAcc:1304631]
rn6_v1_chr1_-_146556171_146556171	0.0516892	Aire	ENSRNOT00000017636|Arnt2|ENSRNOG00000013017|aryl hydrocarbon receptor nuclear translocator 2 [Source:RGD Symbol%3BAcc:2154]
rn6_v1_chr7_+_70445366_70445366	0.0500511	Aire	ENSRNOT00000045687|RGD1565117|ENSRNOG00000033161|similar to 40S ribosomal protein S26 [Source:RGD Symbol%3BAcc:1565117]
rn6_v1_chr10_-_34242985_34242985	0.0492712	Aire	ENSRNOT00000046438|RGD1559575|ENSRNOG00000032396|similar to novel protein [Source:RGD Symbol%3BAcc:1559575]
rn6_v1_chr9_+_12475006_12475006	0.0491147	Aire	ENSRNOT00000079703|LOC100912293|ENSRNOG00000047581|uncharacterized LOC100912293 [Source:RGD Symbol%3BAcc:6487593]
rn6_v1_chr5_+_122508388_122508388	0.0487695	Aire	ENSRNOT00000038410|Tctex1d1|ENSRNOG00000023100|Tctex1 domain containing 1 [Source:RGD Symbol%3BAcc:1311932]
rn6_v1_chrX_-_156270748_156270748	0.0480499	Aire	ENSRNOT00000078438|Ikbkg|ENSRNOG00000060936|inhibitor of kappa light polypeptide gene enhancer in B-cells%2C kinase gamma [Source:RGD Symbol%3BAcc:735223]
rn6_v1_chr2_-_179704629_179704629	0.0468923	Aire	ENSRNOT00000083361|Gria2|ENSRNOG00000054204|glutamate ionotropic receptor AMPA type subunit 2 [Source:RGD Symbol%3BAcc:61862]	ENSRNOT00000077941|Gria2|ENSRNOG00000054204|glutamate ionotropic receptor AMPA type subunit 2 [Source:RGD Symbol%3BAcc:61862]
rn6_v1_chr19_+_15081590_15081590	0.046276	Aire	ENSRNOT00000024187|Ces1f|ENSRNOG00000015438|carboxylesterase 1F [Source:RGD Symbol%3BAcc:1642419]
rn6_v1_chr18_+_61377051_61377051	0.0448169	Aire	ENSRNOT00000066659|Oacyl|ENSRNOG00000024640|O-acyltransferase like [Source:RGD Symbol%3BAcc:1304731]
rn6_v1_chr15_+_61879184_61879184	0.0442678	Aire	ENSRNOT00000042606|Sugt1|ENSRNOG00000012594|SGT1 homolog%2C MIS12 kinetochore complex assembly cochaperone [Source:RGD Symbol%3BAcc:1307550]
rn6_v1_chr7_-_98804499_98804499	0.0433088	Aire	ENSRNOT00000070909|Tatdn1|ENSRNOG00000047198|TatD DNase domain containing 1 [Source:RGD Symbol%3BAcc:1585145]
rn6_v1_chr8_-_52828134_52828134	0.0432769	Aire	ENSRNOT00000007736|Rbm7|ENSRNOG00000005710|RNA binding motif protein 7 [Source:RGD Symbol%3BAcc:1308017]
rn6_v1_chr2_-_21931720_21931720	0.0430143	Aire	ENSRNOT00000018449|Msh3|ENSRNOG00000013673|mutS homolog 3 [Source:RGD Symbol%3BAcc:1563954]
rn6_v1_chr14_-_34561696_34561696	0.0428997	Aire	ENSRNOT00000059763|Srd5a3|ENSRNOG00000002216|steroid 5 alpha-reductase 3 [Source:RGD Symbol%3BAcc:1308828]
rn6_v1_chr1_-_154165524_154165524	0.0422959	Aire	ENSRNOT00000023468|Hikeshi|ENSRNOG00000017383|Hikeshi%2C heat shock protein nuclear import factor [Source:RGD Symbol%3BAcc:1359455]
rn6_v1_chr7_-_11754508_11754508	0.0421777	Aire	ENSRNOT00000026341|Oaz1|ENSRNOG00000019459|ornithine decarboxylase antizyme 1 [Source:RGD Symbol%3BAcc:3219]
rn6_v1_chr8_-_23282989_23282989	0.0387035	Aire	ENSRNOT00000019204|Zfp717|ENSRNOG00000014331|zinc finger protein 717 [Source:RGD Symbol%3BAcc:2319964]
rn6_v1_chr11_+_43521054_43521054	0.0381677	Aire	ENSRNOT00000041679|Olr1551|ENSRNOG00000046134|olfactory receptor 1551 [Source:RGD Symbol%3BAcc:1333073]
rn6_v1_chr10_-_88611105_88611105	0.0376911	Aire	ENSRNOT00000024718|Dhx58|ENSRNOG00000018247|DEXH-box helicase 58 [Source:RGD Symbol%3BAcc:1310093]
rn6_v1_chr1_+_101884276_101884276	0.0375737	Aire	ENSRNOT00000082917|Tmem143|ENSRNOG00000021096|transmembrane protein 143 [Source:RGD Symbol%3BAcc:1305013]
rn6_v1_chr1_+_78739930_78739930	0.0375171	Aire	ENSRNOT00000021976|Strn4|ENSRNOG00000016145|striatin 4 [Source:RGD Symbol%3BAcc:1307030]
rn6_v1_chr4_+_123162086_123162086	0.036736	Aire	ENSRNOT00000011557|Lsm3|ENSRNOG00000008733|LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated [Source:RGD Symbol%3BAcc:1305971]
rn6_v1_chr2_+_182006242_182006242	0.0366025	Aire	ENSRNOT00000064091|Fga|ENSRNOG00000024848|fibrinogen alpha chain [Source:RGD Symbol%3BAcc:2603]
rn6_v1_chr4_+_88695590_88695590	0.0365891	Aire	ENSRNOT00000087835|Ppm1k|ENSRNOG00000006893|protein phosphatase%2C Mg2+/Mn2+ dependent%2C 1K [Source:RGD Symbol%3BAcc:1308501]
rn6_v1_chr5_+_118418799_118418799	0.0354834	Aire	ENSRNOT00000012052|Alg6|ENSRNOG00000009045|ALG6%2C alpha-1%2C3-glucosyltransferase [Source:RGD Symbol%3BAcc:1308815]
rn6_v1_chr20_+_22728208_22728208	0.0351815	Aire	ENSRNOT00000000794|LOC100363472|ENSRNOG00000000641|nuclear receptor-binding factor 2-like [Source:RGD Symbol%3BAcc:2322973]
rn6_v1_chr16_-_52127591_52127591	0.0338536	Aire	ENSRNOT00000033652|Triml2|ENSRNOG00000028299|tripartite motif family-like 2 [Source:RGD Symbol%3BAcc:1565382]
rn6_v1_chr4_-_117575154_117575154	0.0330096	Aire	ENSRNOT00000075813|LOC102556148|ENSRNOG00000045933|probable N-acetyltransferase CML2-like [Source:RGD Symbol%3BAcc:7567030]
rn6_v1_chr13_-_78851600_78851600	0.0321993	Aire	ENSRNOT00000076985|Zbtb37|ENSRNOG00000026907|zinc finger and BTB domain containing 37 [Source:RGD Symbol%3BAcc:1308731]
rn6_v1_chr11_-_4332255_4332255	0.0318938	Aire	ENSRNOT00000087133|Cadm2|ENSRNOG00000030840|cell adhesion molecule 2 [Source:RGD Symbol%3BAcc:1305678]
rn6_v1_chr11_+_84745904_84745904	0.0313138	Aire	ENSRNOT00000002617|Klhl6|ENSRNOG00000001908|kelch-like family member 6 [Source:RGD Symbol%3BAcc:1307521]
rn6_v1_chr1_+_101884019_101884019	0.0294955	Aire	ENSRNOT00000028650|Tmem143|ENSRNOG00000021096|transmembrane protein 143 [Source:RGD Symbol%3BAcc:1305013]
rn6_v1_chrX_-_29825439_29825439	0.0294432	Aire	ENSRNOT00000048155|Gemin8|ENSRNOG00000029038|gem (nuclear organelle) associated protein 8 [Source:RGD Symbol%3BAcc:1359160]
rn6_v1_chr16_-_62164135_62164135	0.0289129	Aire	ENSRNOT00000058872|Gtf2e2|ENSRNOG00000014422|general transcription factor IIE subunit 2 [Source:RGD Symbol%3BAcc:1310134]
rn6_v1_chr4_-_120559078_120559078	0.0283774	Aire	ENSRNOT00000085730|Kbtbd12|ENSRNOG00000061868|kelch repeat and BTB domain containing 12 [Source:RGD Symbol%3BAcc:1585999]	ENSRNOT00000079575|Kbtbd12|ENSRNOG00000061868|kelch repeat and BTB domain containing 12 [Source:RGD Symbol%3BAcc:1585999]
rn6_v1_chr10_-_52290657_52290657	0.0282735	Aire	ENSRNOT00000005293|Map2k4|ENSRNOG00000003834|mitogen activated protein kinase kinase 4 [Source:RGD Symbol%3BAcc:1307040]
rn6_v1_chr1_+_228142778_228142778	0.0280375	Aire	ENSRNOT00000028517|Mrpl16|ENSRNOG00000021005|mitochondrial ribosomal protein L16 [Source:RGD Symbol%3BAcc:735195]
rn6_v1_chr11_-_31772984_31772984	0.0273565	Aire	ENSRNOT00000002771|Dnajc28|ENSRNOG00000002026|DnaJ heat shock protein family (Hsp40) member C28 [Source:RGD Symbol%3BAcc:1359589]
rn6_v1_chr13_-_42885440_42885440	0.0272813	Aire	ENSRNOT00000038020|Nckap5|ENSRNOG00000021553|NCK-associated protein 5 [Source:RGD Symbol%3BAcc:1564507]
rn6_v1_chr3_-_51612397_51612397	0.0261518	Aire	ENSRNOT00000081401|Scn3a|ENSRNOG00000005007|sodium voltage-gated channel alpha subunit 3 [Source:RGD Symbol%3BAcc:3635]
rn6_v1_chr1_+_220096422_220096422	0.0258046	Aire	ENSRNOT00000034771|Ccdc87|ENSRNOG00000025247|coiled-coil domain containing 87 [Source:RGD Symbol%3BAcc:1596153]
rn6_v1_chr15_-_52214616_52214616	0.0255484	Aire	ENSRNOT00000015035|Sftpc|ENSRNOG00000011177|surfactant protein C [Source:RGD Symbol%3BAcc:3666]
rn6_v1_chrX_-_45284341_45284341	0.0253824	Aire	ENSRNOT00000045436|Obp1f|ENSRNOG00000045757|odorant binding protein I f [Source:RGD Symbol%3BAcc:621639]
rn6_v1_chr8_-_58253688_58253688	0.0248134	Aire	ENSRNOT00000010956|Cul5|ENSRNOG00000008039|cullin 5 [Source:RGD Symbol%3BAcc:621742]
rn6_v1_chr8_-_36438730_36438730	0.0243428	Aire	ENSRNOT00000015366|Fam118b|ENSRNOG00000011543|family with sequence similarity 118%2C member B [Source:RGD Symbol%3BAcc:1307173]
rn6_v1_chrX_+_83926513_83926513	0.0239318	Aire	ENSRNOT00000035274|RGD1561958|ENSRNOG00000022411|similar to RIKEN cDNA 2010106E10 [Source:RGD Symbol%3BAcc:1561958]
rn6_v1_chr9_+_84410972_84410972	0.0237836	Aire	ENSRNOT00000019724|Mogat1|ENSRNOG00000014692|monoacylglycerol O-acyltransferase 1 [Source:RGD Symbol%3BAcc:1311644]
rn6_v1_chr3_-_13978224_13978224	0.0232976	Aire	ENSRNOT00000025528|Phf19|ENSRNOG00000018874|PHD finger protein 19 [Source:RGD Symbol%3BAcc:1310390]
rn6_v1_chr7_-_123655896_123655896	0.0225636	Aire	ENSRNOT00000012413|Cyp2d2|ENSRNOG00000008988|cytochrome P450%2C family 2%2C subfamily d%2C polypeptide 2 [Source:RGD Symbol%3BAcc:2471]
rn6_v1_chr11_+_45462345_45462345	0.0223394	Aire	ENSRNOT00000029420|Nit2|ENSRNOG00000027797|nitrilase family%2C member 2 [Source:RGD Symbol%3BAcc:1310494]
rn6_v1_chr4_-_144620731_144620731	0.0221015	Aire	ENSRNOT00000066468|Rad18|ENSRNOG00000005907|RAD18 E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:1306993]
rn6_v1_chr15_-_37830131_37830131	0.0216115	Aire	ENSRNOT00000075861|Eef1akmt1|ENSRNOG00000009849|eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1 [Source:RGD Symbol%3BAcc:1306762]
rn6_v1_chr7_-_119712888_119712888	0.0211195	Aire	ENSRNOT00000077438|Il2rb|ENSRNOG00000048636|interleukin 2 receptor subunit beta [Source:RGD Symbol%3BAcc:2896]
rn6_v1_chr7_-_101138373_101138373	0.0198934	Aire	ENSRNOT00000043257|LOC500877|ENSRNOG00000029292|Ab1-152 [Source:RGD Symbol%3BAcc:1563390]
rn6_v1_chr9_+_93086012_93086012	0.0190351	Aire	ENSRNOT00000089470|Psmd1|ENSRNOG00000017730|proteasome 26S subunit%2C non-ATPase 1 [Source:RGD Symbol%3BAcc:621669]
rn6_v1_chr10_-_107158997_107158997	0.0186183	Aire	ENSRNOT00000004047|Dnah17|ENSRNOG00000003028|dynein%2C axonemal%2C heavy chain 17 [Source:RGD Symbol%3BAcc:1563805]
rn6_v1_chr7_-_138483612_138483612	0.018603	Aire	ENSRNOT00000085620|Slc38a4|ENSRNOG00000006653|solute carrier family 38%2C member 4 [Source:RGD Symbol%3BAcc:621836]
rn6_v1_chr3_+_2872031_2872031	0.0185526	Aire	ENSRNOT00000023062|Lcn8|ENSRNOG00000017161|lipocalin 8 [Source:RGD Symbol%3BAcc:1306747]
rn6_v1_chr18_-_36322320_36322320	0.0185239	Aire	ENSRNOT00000060260|Grxcr2|ENSRNOG00000039325|glutaredoxin and cysteine rich domain containing 2 [Source:RGD Symbol%3BAcc:1584696]
rn6_v1_chr9_+_95285592_95285592	0.0182821	Aire	ENSRNOT00000063853|Ugt1a5|ENSRNOG00000018740|UDP glucuronosyltransferase family 1 member A5 [Source:RGD Symbol%3BAcc:1583689]
rn6_v1_chr11_+_54619129_54619129	0.0181834	Aire	ENSRNOT00000059924|Trat1|ENSRNOG00000029564|T cell receptor associated transmembrane adaptor 1 [Source:RGD Symbol%3BAcc:1563011]
rn6_v1_chr17_-_15566332_15566332	0.0172177	Aire	ENSRNOT00000093743|Ecm2|ENSRNOG00000031716|extracellular matrix protein 2 [Source:RGD Symbol%3BAcc:2320282]
rn6_v1_chr10_-_70735742_70735742	0.0167952	Aire	ENSRNOT00000077035|Heatr9|ENSRNOG00000037100|HEAT repeat containing 9 [Source:RGD Symbol%3BAcc:1559875]
rn6_v1_chr14_+_79339258_79339258	0.0162477	Aire	ENSRNOT00000058414|Tbc1d14|ENSRNOG00000006400|TBC1 domain family%2C member 14 [Source:RGD Symbol%3BAcc:1309993]
rn6_v1_chr14_-_17436897_17436897	0.0159525	Aire	ENSRNOT00000003277|Uso1|ENSRNOG00000002301|USO1 vesicle transport factor [Source:RGD Symbol%3BAcc:621604]
rn6_v1_chr13_+_60545635_60545635	0.0151582	Aire	ENSRNOT00000077153|Uchl5|ENSRNOG00000003545|ubiquitin C-terminal hydrolase L5 [Source:RGD Symbol%3BAcc:1305414]
rn6_v1_chr12_+_4248808_4248808	0.0151082	Aire	ENSRNOT00000042410|AABR07035089.1|ENSRNOG00000047146|
rn6_v1_chr1_+_266482858_266482858	0.0149553	Aire	ENSRNOT00000027223|As3mt|ENSRNOG00000020081|arsenite methyltransferase [Source:RGD Symbol%3BAcc:621325]
rn6_v1_chr1_+_100059967_100059967	0.0149033	Aire	ENSRNOT00000081095|Klk1|ENSRNOG00000032857|kallikrein 1 [Source:RGD Symbol%3BAcc:2969]
rn6_v1_chr2_+_196608496_196608496	0.0143306	Aire	ENSRNOT00000091681|Arnt|ENSRNOG00000031174|aryl hydrocarbon receptor nuclear translocator [Source:RGD Symbol%3BAcc:2153]
rn6_v1_chr10_-_87153982_87153982	0.0137582	Aire	ENSRNOT00000014414|Krt222|ENSRNOG00000010839|keratin 222 [Source:RGD Symbol%3BAcc:1560383]
rn6_v1_chr17_+_68477446_68477467	0.0136273	Aire	ENSRNOT00000086236|Pitrm1|ENSRNOG00000016511|pitrilysin metallopeptidase 1 [Source:RGD Symbol%3BAcc:1310998]	ENSRNOT00000068174|Pitrm1|ENSRNOG00000016511|pitrilysin metallopeptidase 1 [Source:RGD Symbol%3BAcc:1310998]
rn6_v1_chr3_-_11820549_11820549	0.0132518	Aire	ENSRNOT00000020660|Cfap157|ENSRNOG00000039315|cilia and flagella associated protein 157 [Source:RGD Symbol%3BAcc:1560002]
rn6_v1_chr4_-_99546905_99546905	0.0128774	Aire	ENSRNOT00000077447|Kdm3a|ENSRNOG00000007814|lysine demethylase 3A [Source:RGD Symbol%3BAcc:708351]
rn6_v1_chr3_-_148493225_148493225	0.0119385	Aire	ENSRNOT00000012141|Pdrg1|ENSRNOG00000008845|p53 and DNA damage regulated 1 [Source:RGD Symbol%3BAcc:1305096]
rn6_v1_chr6_+_104611026_104611026	0.0118471	Aire	ENSRNOT00000007583|Srsf5|ENSRNOG00000005513|serine and arginine rich splicing factor 5 [Source:RGD Symbol%3BAcc:3664]
rn6_v1_chr1_+_59156251_59156251	0.0114742	Aire	ENSRNOT00000017442|Lix1|ENSRNOG00000012988|limb and CNS expressed 1 [Source:RGD Symbol%3BAcc:1309454]
rn6_v1_chr2_-_100249811_100249811	0.0107226	Aire	ENSRNOT00000086760|Hnf4g|ENSRNOG00000008971|hepatocyte nuclear factor 4%2C gamma [Source:RGD Symbol%3BAcc:1310102]
rn6_v1_chr1_-_162713610_162713610	0.010161	Aire	ENSRNOT00000018091|Aqp11|ENSRNOG00000013358|aquaporin 11 [Source:RGD Symbol%3BAcc:628763]
rn6_v1_chr5_-_124403195_124403195	0.0101357	Aire	ENSRNOT00000067850|C8a|ENSRNOG00000007697|complement C8 alpha chain [Source:RGD Symbol%3BAcc:1308355]
rn6_v1_chr13_-_98529040_98529040	0.00998006	Aire	ENSRNOT00000091715|Psen2|ENSRNOG00000002879|presenilin 2 [Source:RGD Symbol%3BAcc:621060]
rn6_v1_chr1_+_63842277_63842382	0.00992233	Aire	ENSRNOT00000087957|Lilrb3a|ENSRNOG00000053260|leukocyte immunoglobulin-like receptor%2C subfamily B (with TM and ITIM domains)%2C member 3A [Source:RGD Symbol%3BAcc:1586827]	ENSRNOT00000080820|Lilrb3a|ENSRNOG00000053260|leukocyte immunoglobulin-like receptor%2C subfamily B (with TM and ITIM domains)%2C member 3A [Source:RGD Symbol%3BAcc:1586827]
rn6_v1_chr9_+_92618550_92618550	0.00953111	Aire	ENSRNOT00000078987|Sp140|ENSRNOG00000022800|SP140 nuclear body protein [Source:RGD Symbol%3BAcc:1306355]
rn6_v1_chr18_+_29506128_29506128	0.00914081	Aire	ENSRNOT00000003878|Slc35a4|ENSRNOG00000002908|solute carrier family 35%2C member A4 [Source:RGD Symbol%3BAcc:628792]
rn6_v1_chr8_+_82171497_82171497	0.00913246	Aire	ENSRNOT00000011768|Myo5c|ENSRNOG00000008356|myosin VC [Source:RGD Symbol%3BAcc:1309994]
rn6_v1_chr1_+_143675985_143675985	0.00888804	Aire	ENSRNOT00000078500|Tm6sf1|ENSRNOG00000019662|transmembrane 6 superfamily member 1 [Source:RGD Symbol%3BAcc:1307978]
rn6_v1_chr15_+_62520953_62520953	0.00883168	Aire	ENSRNOT00000040851|LOC306079|ENSRNOG00000031061|similar to RIKEN cDNA 3100001N19 [Source:RGD Symbol%3BAcc:1564564]
rn6_v1_chr3_+_95233874_95233874	0.00850908	Aire	ENSRNOT00000079743|LOC691083|ENSRNOG00000013437|hypothetical protein LOC691083 [Source:RGD Symbol%3BAcc:1588621]
rn6_v1_chrX_+_26294066_26294066	0.00797911	Aire	ENSRNOT00000037862|Hccs|ENSRNOG00000025910|holocytochrome c synthase [Source:RGD Symbol%3BAcc:1563855]
rn6_v1_chr3_+_153398130_153398130	0.00736804	Aire	ENSRNOT00000068135|Rpn2|ENSRNOG00000007492|ribophorin II [Source:RGD Symbol%3BAcc:62075]
rn6_v1_chr2_-_209001895_209001895	0.00716904	Aire	ENSRNOT00000055960|RGD1309110|ENSRNOG00000017574|similar to Hypothetical protein MGC58999 [Source:RGD Symbol%3BAcc:1309110]
rn6_v1_chr3_-_153246433_153246433	0.00713646	Aire	ENSRNOT00000067748|Samhd1|ENSRNOG00000006418|SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 [Source:RGD Symbol%3BAcc:1308369]
rn6_v1_chr17_+_25228437_25228437	0.00705516	Aire	ENSRNOT00000072904|AABR07027342.1|ENSRNOG00000024499|
rn6_v1_chr7_-_143738237_143738237	0.00704007	Aire	ENSRNOT00000055320|Spryd3|ENSRNOG00000010793|SPRY domain containing 3 [Source:RGD Symbol%3BAcc:1561500]
rn6_v1_chr5_+_60528997_60528997	0.00692522	Aire	ENSRNOT00000051445|Grhpr|ENSRNOG00000012794|glyoxylate and hydroxypyruvate reductase [Source:RGD Symbol%3BAcc:1308851]
rn6_v1_chr12_-_19439977_19439977	0.00668683	Aire	ENSRNOT00000060035|Nxpe5|ENSRNOG00000031343|neurexophilin and PC-esterase domain family%2C member 5 [Source:RGD Symbol%3BAcc:1588255]
rn6_v1_chr1_-_99135977_99135977	0.00626074	Aire	ENSRNOT00000056515|Vom2r38|ENSRNOG00000043280|vomeronasal 2 receptor%2C 38 [Source:RGD Symbol%3BAcc:1565669]
rn6_v1_chr12_+_40417944_40417944	0.00587225	Aire	ENSRNOT00000073125|Acad10|ENSRNOG00000037815|acyl-CoA dehydrogenase family%2C member 10 [Source:RGD Symbol%3BAcc:1310159]
rn6_v1_chr4_+_118160147_118160147	0.00548072	Aire	ENSRNOT00000022014|Fam136a|ENSRNOG00000016273|family with sequence similarity 136%2C member A [Source:RGD Symbol%3BAcc:1304825]
rn6_v1_chrX_-_1704033_1704033	0.00526308	Aire	ENSRNOT00000051956|Usp11|ENSRNOG00000009049|ubiquitin specific peptidase 11 [Source:RGD Symbol%3BAcc:1303052]
rn6_v1_chr5_+_15043955_15043955	0.00509467	Aire	ENSRNOT00000047093|Rp1|ENSRNOG00000008807|retinitis pigmentosa 1 [Source:RGD Symbol%3BAcc:1596713]
rn6_v1_chrX_-_10218583_10218583	0.00455791	Aire	ENSRNOT00000013382|Nyx|ENSRNOG00000009646|nyctalopin [Source:RGD Symbol%3BAcc:1561300]
rn6_v1_chr9_+_7643533_7643533	0.00393825	Aire	ENSRNOT00000074923|Vom2r76|ENSRNOG00000045587|vomeronasal 2 receptor%2C 76 [Source:RGD Symbol%3BAcc:1588569]
rn6_v1_chr11_+_83986230_83986247	0.00302228	Aire	ENSRNOT00000002331|Alg3|ENSRNOG00000001712|ALG3%2C alpha-1%2C3- mannosyltransferase [Source:RGD Symbol%3BAcc:1306004]	ENSRNOT00000073703|Alg3|ENSRNOG00000001712|ALG3%2C alpha-1%2C3- mannosyltransferase [Source:RGD Symbol%3BAcc:1306004]
rn6_v1_chr8_-_16486419_16486419	0.00288592	Aire	ENSRNOT00000033223|LOC690235|ENSRNOG00000024200|similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase-like 1) [Source:RGD Symbol%3BAcc:1582875]
rn6_v1_chr10_+_37594578_37594578	0.00287902	Aire	ENSRNOT00000007676|Skp1|ENSRNOG00000005828|S-phase kinase-associated protein 1 [Source:RGD Symbol%3BAcc:1359648]
rn6_v1_chr1_+_142951094_142951094	0.00228611	Aire	ENSRNOT00000077441|Slc28a1|ENSRNOG00000018940|solute carrier family 28 member 1 [Source:RGD Symbol%3BAcc:621223]
rn6_v1_chr11_+_34101197_34101197	0.002279	Aire	ENSRNOT00000002299|Chaf1b|ENSRNOG00000001692|chromatin assembly factor 1 subunit B [Source:RGD Symbol%3BAcc:1307634]
rn6_v1_chr8_-_32000378_32000378	0.00195625	Aire	ENSRNOT00000013341|Adamts15|ENSRNOG00000009892|ADAM metallopeptidase with thrombospondin type 1 motif%2C 15 [Source:RGD Symbol%3BAcc:1309770]
rn6_v1_chr10_-_56511583_56511583	0.00193334	Aire	ENSRNOT00000021402|LOC497940|ENSRNOG00000015975|similar to RIKEN cDNA 2810408A11 [Source:RGD Symbol%3BAcc:1563007]
rn6_v1_chr7_+_123482255_123482255	0.00162329	Aire	ENSRNOT00000064487|LOC688613|ENSRNOG00000043197|hypothetical protein LOC688613 [Source:RGD Symbol%3BAcc:1586487]
rn6_v1_chr6_+_44225233_44225233	0.000113245	Aire	ENSRNOT00000066593|Kidins220|ENSRNOG00000023176|kinase D-interacting substrate 220 [Source:RGD Symbol%3BAcc:619949]
