rn6_v1_chr9_+_73378057_73378111	0.10969	Emx1_Emx2	ENSRNOT00000043627|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]	ENSRNOT00000045766|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]	ENSRNOT00000092445|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]	ENSRNOT00000037974|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]
rn6_v1_chr20_+_3176107_3176107	0.107326	Emx1_Emx2	ENSRNOT00000001036|RT1-S3|ENSRNOG00000000777|RT1 class Ib%2C locus S3 [Source:RGD Symbol%3BAcc:735037]
rn6_v1_chr2_+_86996798_86996798	0.0896001	Emx1_Emx2	ENSRNOT00000070821|Zfp455|ENSRNOG00000031576|zinc finger protein 455 [Source:RGD Symbol%3BAcc:628788]
rn6_v1_chr11_-_11585078_11585078	0.0869304	Emx1_Emx2	ENSRNOT00000088878|Robo2|ENSRNOG00000029598|roundabout guidance receptor 2 [Source:RGD Symbol%3BAcc:620167]
rn6_v1_chr13_-_76049363_76049363	0.0837697	Emx1_Emx2	ENSRNOT00000075865|Brinp2|ENSRNOG00000005592|BMP/retinoic acid inducible neural specific 2 [Source:RGD Symbol%3BAcc:708419]	ENSRNOT00000007455|Brinp2|ENSRNOG00000005592|BMP/retinoic acid inducible neural specific 2 [Source:RGD Symbol%3BAcc:708419]
rn6_v1_chr2_+_86996497_86996497	0.0784318	Emx1_Emx2	ENSRNOT00000042058|Zfp455|ENSRNOG00000031576|zinc finger protein 455 [Source:RGD Symbol%3BAcc:628788]
rn6_v1_chr17_-_51912496_51912496	0.067127	Emx1_Emx2	ENSRNOT00000019272|Inhba|ENSRNOG00000014320|inhibin beta A subunit [Source:RGD Symbol%3BAcc:62074]
rn6_v1_chr20_+_34258791_34258791	0.061274	Emx1_Emx2	ENSRNOT00000000468|Slc35f1|ENSRNOG00000000412|solute carrier family 35%2C member F1 [Source:RGD Symbol%3BAcc:1559576]
rn6_v1_chr12_-_46493203_46493203	0.0583995	Emx1_Emx2	ENSRNOT00000057036|Cit|ENSRNOG00000001143|citron rho-interacting serine/threonine kinase [Source:RGD Symbol%3BAcc:70878]
rn6_v1_chr9_-_30844199_30844199	0.0569946	Emx1_Emx2	ENSRNOT00000017169|Col19a1|ENSRNOG00000012759|collagen type XIX alpha 1 chain [Source:RGD Symbol%3BAcc:1308920]
rn6_v1_chr1_+_101603222_101603222	0.056668	Emx1_Emx2	ENSRNOT00000033278|Izumo1|ENSRNOG00000024678|izumo sperm-egg fusion 1 [Source:RGD Symbol%3BAcc:1565454]
rn6_v1_chr20_-_13994794_13994794	0.0534742	Emx1_Emx2	ENSRNOT00000093466|Ggt5|ENSRNOG00000062276|gamma-glutamyltransferase 5 [Source:RGD Symbol%3BAcc:2684]
rn6_v1_chr2_+_54466280_54466280	0.053291	Emx1_Emx2	ENSRNOT00000033112|C6|ENSRNOG00000024115|complement C6 [Source:RGD Symbol%3BAcc:2238]
rn6_v1_chr3_+_161236898_161236971	0.0530062	Emx1_Emx2	ENSRNOT00000082303|Ube2c|ENSRNOG00000015131|ubiquitin-conjugating enzyme E2C [Source:RGD Symbol%3BAcc:1305382]	ENSRNOT00000020323|Ube2c|ENSRNOG00000015131|ubiquitin-conjugating enzyme E2C [Source:RGD Symbol%3BAcc:1305382]
rn6_v1_chr20_+_3246739_3246739	0.0516487	Emx1_Emx2	ENSRNOT00000061299|RT1-T24-2|ENSRNOG00000000787|RT1 class I%2C locus T24%2C gene 2 [Source:RGD Symbol%3BAcc:1303033]
rn6_v1_chrX_+_78042859_78042859	0.0516059	Emx1_Emx2	ENSRNOT00000003286|Lpar4|ENSRNOG00000002428|lysophosphatidic acid receptor 4 [Source:RGD Symbol%3BAcc:1563686]
rn6_v1_chr3_+_15560712_15560712	0.0513655	Emx1_Emx2	ENSRNOT00000010218|Ptgs1|ENSRNOG00000007415|prostaglandin-endoperoxide synthase 1 [Source:RGD Symbol%3BAcc:3439]
rn6_v1_chr7_+_64769089_64769089	0.0468406	Emx1_Emx2	ENSRNOT00000088861|Grip1|ENSRNOG00000004013|glutamate receptor interacting protein 1 [Source:RGD Symbol%3BAcc:621667]
rn6_v1_chr2_-_198706428_198706428	0.045727	Emx1_Emx2	ENSRNOT00000085006|Polr3gl|ENSRNOG00000021209|RNA polymerase III subunit G like [Source:RGD Symbol%3BAcc:1582857]
rn6_v1_chr11_-_782954_782954	0.0453886	Emx1_Emx2	ENSRNOT00000040065|Epha3|ENSRNOG00000030285|Eph receptor A3 [Source:RGD Symbol%3BAcc:68389]
rn6_v1_chr11_+_40509078_40509078	0.0444711	Emx1_Emx2	ENSRNOT00000023108|AABR07033851.1|ENSRNOG00000017167|
rn6_v1_chr6_+_106084815_106084815	0.043109	Emx1_Emx2	ENSRNOT00000058195|Sipa1l1|ENSRNOG00000007646|signal-induced proliferation-associated 1 like 1 [Source:RGD Symbol%3BAcc:708497]
rn6_v1_chr13_-_32427177_32427177	0.0405337	Emx1_Emx2	ENSRNOT00000044628|Cdh19|ENSRNOG00000029841|cadherin 19 [Source:RGD Symbol%3BAcc:1307169]
rn6_v1_chr8_-_3272306_3272306	0.0375053	Emx1_Emx2	ENSRNOT00000040365|AABR07068955.1|ENSRNOG00000033199|
rn6_v1_chrX_+_84064427_84064427	0.0358835	Emx1_Emx2	ENSRNOT00000046364|Zfp711|ENSRNOG00000022391|zinc finger protein 711 [Source:RGD Symbol%3BAcc:1562768]
rn6_v1_chr11_-_768644_768644	0.0352553	Emx1_Emx2	ENSRNOT00000090197|Epha3|ENSRNOG00000030285|Eph receptor A3 [Source:RGD Symbol%3BAcc:68389]
rn6_v1_chr13_-_67609469_67609469	0.0346294	Emx1_Emx2	ENSRNOT00000059984|RGD1307830|ENSRNOG00000002473|similar to cDNA sequence BC003331 [Source:RGD Symbol%3BAcc:1307830]	ENSRNOT00000059982|RGD1307830|ENSRNOG00000002473|similar to cDNA sequence BC003331 [Source:RGD Symbol%3BAcc:1307830]
rn6_v1_chr10_-_91661558_91661558	0.0345251	Emx1_Emx2	ENSRNOT00000043156|AABR07030521.1|ENSRNOG00000042833|
rn6_v1_chr15_+_12827707_12827707	0.0340781	Emx1_Emx2	ENSRNOT00000012452|Fezf2|ENSRNOG00000009206|Fez family zinc finger 2 [Source:RGD Symbol%3BAcc:1311068]
rn6_v1_chr5_+_152680407_152680407	0.0339923	Emx1_Emx2	ENSRNOT00000076864|Stmn1|ENSRNOG00000016810|stathmin 1 [Source:RGD Symbol%3BAcc:2992]
rn6_v1_chr1_+_170205591_170205591	0.0339636	Emx1_Emx2	ENSRNOT00000071063|LOC686660|ENSRNOG00000049480|similar to olfactory receptor 692 [Source:RGD Symbol%3BAcc:1594988]
rn6_v1_chr1_+_265157379_265157379	0.0337909	Emx1_Emx2	ENSRNOT00000022426|Btrc|ENSRNOG00000016280|beta-transducin repeat containing E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:1359721]
rn6_v1_chr10_-_36402619_36402619	0.0336827	Emx1_Emx2	ENSRNOT00000040346|Zfp2|ENSRNOG00000030750|zinc finger protein 2 [Source:RGD Symbol%3BAcc:1562610]
rn6_v1_chr20_+_3230052_3230052	0.0335585	Emx1_Emx2	ENSRNOT00000078454|RT1-T24-3|ENSRNOG00000045924|RT1 class I%2C locus T24%2C gene 3 [Source:RGD Symbol%3BAcc:1624211]
rn6_v1_chr1_-_189911571_189911650	0.0324306	Emx1_Emx2	ENSRNOT00000080996|Zp2|ENSRNOG00000057989|zona pellucida glycoprotein 2 [Source:RGD Symbol%3BAcc:620605]	ENSRNOT00000088536|Zp2|ENSRNOG00000057989|zona pellucida glycoprotein 2 [Source:RGD Symbol%3BAcc:620605]
rn6_v1_chr5_+_50381244_50381244	0.0319975	Emx1_Emx2	ENSRNOT00000012385|Cga|ENSRNOG00000009269|glycoprotein hormones%2C alpha polypeptide [Source:RGD Symbol%3BAcc:620436]
rn6_v1_chr3_+_148327965_148327987	0.0319589	Emx1_Emx2	ENSRNOT00000010851|Tpx2|ENSRNOG00000008165|TPX2%2C microtubule nucleation factor [Source:RGD Symbol%3BAcc:1311894]	ENSRNOT00000088481|Tpx2|ENSRNOG00000008165|TPX2%2C microtubule nucleation factor [Source:RGD Symbol%3BAcc:1311894]
rn6_v1_chr1_+_219403970_219403970	0.0314063	Emx1_Emx2	ENSRNOT00000029607|Ptprcap|ENSRNOG00000021724|protein tyrosine phosphatase%2C receptor type%2C C-associated protein [Source:RGD Symbol%3BAcc:1559601]
rn6_v1_chr4_+_31229913_31229913	0.0313321	Emx1_Emx2	ENSRNOT00000077134|Samd9l|ENSRNOG00000051922|sterile alpha motif domain containing 9-like [Source:MGI Symbol%3BAcc:MGI:1343184]	ENSRNOT00000087897|Samd9l|ENSRNOG00000051922|sterile alpha motif domain containing 9-like [Source:MGI Symbol%3BAcc:MGI:1343184]
rn6_v1_chr1_+_189233141_189233141	0.0309058	Emx1_Emx2	ENSRNOT00000049380|Acsm5|ENSRNOG00000031211|acyl-CoA synthetase medium-chain family member 5 [Source:RGD Symbol%3BAcc:1309578]
rn6_v1_chr3_-_48831417_48831467	0.0298702	Emx1_Emx2	ENSRNOT00000009920|Kcnh7|ENSRNOG00000007528|potassium voltage-gated channel subfamily H member 7 [Source:RGD Symbol%3BAcc:621112]	ENSRNOT00000085246|Kcnh7|ENSRNOG00000007528|potassium voltage-gated channel subfamily H member 7 [Source:RGD Symbol%3BAcc:621112]
rn6_v1_chr10_+_1920529_1920529	0.0279743	Emx1_Emx2	ENSRNOT00000072296|A630010A05Rik|ENSRNOG00000050955|RIKEN cDNA A630010A05 gene [Source:MGI Symbol%3BAcc:MGI:3584518]
rn6_v1_chr1_+_141218095_141218095	0.0277272	Emx1_Emx2	ENSRNOT00000051411|LOC691427|ENSRNOG00000031802|similar to 6.8 kDa mitochondrial proteolipid [Source:RGD Symbol%3BAcc:1583946]
rn6_v1_chr8_+_117170620_117170620	0.0276394	Emx1_Emx2	ENSRNOT00000075271|LOC498675|ENSRNOG00000046155|hypothetical LOC498675 [Source:RGD Symbol%3BAcc:1589651]
rn6_v1_chr2_+_58448917_58448917	0.0274525	Emx1_Emx2	ENSRNOT00000082562|Ranbp3l|ENSRNOG00000052173|RAN binding protein 3-like [Source:RGD Symbol%3BAcc:1307559]
rn6_v1_chr4_-_55011415_55011415	0.0272971	Emx1_Emx2	ENSRNOT00000056996|Grm8|ENSRNOG00000021468|glutamate metabotropic receptor 8 [Source:RGD Symbol%3BAcc:619858]
rn6_v1_chr13_-_102857551_102857551	0.0271684	Emx1_Emx2	ENSRNOT00000080309|Mark1|ENSRNOG00000002339|microtubule affinity regulating kinase 1 [Source:RGD Symbol%3BAcc:619882]
rn6_v1_chr16_+_39827749_39827749	0.0270957	Emx1_Emx2	ENSRNOT00000074885|Wdr17|ENSRNOG00000048847|WD repeat domain 17 [Source:RGD Symbol%3BAcc:1590843]
rn6_v1_chr6_-_3254779_3254779	0.0269095	Emx1_Emx2	ENSRNOT00000061975|Cdkl4|ENSRNOG00000040266|cyclin-dependent kinase-like 4 [Source:RGD Symbol%3BAcc:1583704]
rn6_v1_chr4_+_99823252_99823252	0.0266885	Emx1_Emx2	ENSRNOT00000013587|Polr1a|ENSRNOG00000009545|RNA polymerase I subunit A [Source:RGD Symbol%3BAcc:620824]
rn6_v1_chr1_-_166912524_166912524	0.0262085	Emx1_Emx2	ENSRNOT00000092952|Inppl1|ENSRNOG00000019730|inositol polyphosphate phosphatase-like 1 [Source:RGD Symbol%3BAcc:68396]
rn6_v1_chr16_-_32439421_32439421	0.026075	Emx1_Emx2	ENSRNOT00000043100|Nek1|ENSRNOG00000010418|NIMA-related kinase 1 [Source:RGD Symbol%3BAcc:1309375]
rn6_v1_chr16_-_32421005_32421005	0.0252443	Emx1_Emx2	ENSRNOT00000082712|Nek1|ENSRNOG00000010418|NIMA-related kinase 1 [Source:RGD Symbol%3BAcc:1309375]
rn6_v1_chr9_+_111279495_111279495	0.0249317	Emx1_Emx2	ENSRNOT00000072791|Ppip5k2|ENSRNOG00000011613|diphosphoinositol pentakisphosphate kinase 2 [Source:RGD Symbol%3BAcc:1590765]
rn6_v1_chr1_+_22332090_22332090	0.0248417	Emx1_Emx2	ENSRNOT00000091252|AABR07000663.1|ENSRNOG00000056705|trace amine-associated receptor 8c (Taar8c)%2C mRNA [Source:RefSeq mRNA%3BAcc:NM_175600]
rn6_v1_chrX_-_14972675_14972675	0.0244127	Emx1_Emx2	ENSRNOT00000079664|Slc38a5|ENSRNOG00000027767|solute carrier family 38%2C member 5 [Source:RGD Symbol%3BAcc:620702]
rn6_v1_chr2_+_52855671_52855671	0.0243455	Emx1_Emx2	ENSRNOT00000080851|AABR07008319.1|ENSRNOG00000056627|
rn6_v1_chr16_+_70644474_70644474	0.024283	Emx1_Emx2	ENSRNOT00000045955|LOC100359503|ENSRNOG00000046342|ribosomal protein S28-like [Source:RGD Symbol%3BAcc:2323691]
rn6_v1_chr8_+_106816152_106816152	0.0242007	Emx1_Emx2	ENSRNOT00000047613|Faim|ENSRNOG00000030069|Fas apoptotic inhibitory molecule [Source:RGD Symbol%3BAcc:620572]
rn6_v1_chr1_+_147713892_147713898	0.0241981	Emx1_Emx2	ENSRNOT00000092985|Cyp2c6v1|ENSRNOG00000024016|cytochrome P450%2C family 2%2C subfamily C%2C polypeptide 6%2C variant 1 [Source:RGD Symbol%3BAcc:619934]	ENSRNOT00000054742|Cyp2c6v1|ENSRNOG00000024016|cytochrome P450%2C family 2%2C subfamily C%2C polypeptide 6%2C variant 1 [Source:RGD Symbol%3BAcc:619934]	ENSRNOT00000074103|Cyp2c6v1|ENSRNOG00000024016|cytochrome P450%2C family 2%2C subfamily C%2C polypeptide 6%2C variant 1 [Source:RGD Symbol%3BAcc:619934]
rn6_v1_chr2_-_186245163_186245163	0.0240048	Emx1_Emx2	ENSRNOT00000089339|Dclk2|ENSRNOG00000016550|doublecortin-like kinase 2 [Source:RGD Symbol%3BAcc:1308384]
rn6_v1_chr7_+_27620458_27620458	0.0239904	Emx1_Emx2	ENSRNOT00000059532|RGD1560034|ENSRNOG00000038943|similar to FLJ25323 protein [Source:RGD Symbol%3BAcc:1560034]
rn6_v1_chr2_-_219262901_219262901	0.0237308	Emx1_Emx2	ENSRNOT00000037068|Gpr88|ENSRNOG00000026953|G-protein coupled receptor 88 [Source:RGD Symbol%3BAcc:61921]
rn6_v1_chr8_+_107229832_107229832	0.0233022	Emx1_Emx2	ENSRNOT00000045821|Faim|ENSRNOG00000030463|Fas apoptotic inhibitory molecule [Source:RGD Symbol%3BAcc:620572]
rn6_v1_chr2_-_118882562_118882562	0.0232087	Emx1_Emx2	ENSRNOT00000058860|Kcnmb3|ENSRNOG00000027836|potassium calcium-activated channel subfamily M regulatory beta subunit 3 [Source:RGD Symbol%3BAcc:1311852]
rn6_v1_chr2_-_57600820_57600820	0.0231275	Emx1_Emx2	ENSRNOT00000083247|Nipbl|ENSRNOG00000056907|NIPBL%2C cohesin loading factor [Source:RGD Symbol%3BAcc:1306393]
rn6_v1_chr1_-_151106802_151106802	0.0227458	Emx1_Emx2	ENSRNOT00000021971|Tyr|ENSRNOG00000016421|tyrosinase [Source:RGD Symbol%3BAcc:1589755]
rn6_v1_chr16_+_62153792_62153792	0.0226063	Emx1_Emx2	ENSRNOT00000074543|Smim18|ENSRNOG00000049689|small integral membrane protein 18 [Source:RGD Symbol%3BAcc:6501537]
rn6_v1_chr17_-_18590536_18590536	0.0221313	Emx1_Emx2	ENSRNOT00000078992|Cap2|ENSRNOG00000043350|CAP%2C adenylate cyclase-associated protein%2C 2 (yeast) [Source:RGD Symbol%3BAcc:620310]
rn6_v1_chr3_-_55951584_55951584	0.021813	Emx1_Emx2	ENSRNOT00000036585|Fastkd1|ENSRNOG00000024335|FAST kinase domains 1 [Source:RGD Symbol%3BAcc:1563531]
rn6_v1_chr7_-_50278842_50278842	0.021778	Emx1_Emx2	ENSRNOT00000088950|Syt1|ENSRNOG00000006426|synaptotagmin 1 [Source:RGD Symbol%3BAcc:3803]
rn6_v1_chr16_+_46731403_46731403	0.0217172	Emx1_Emx2	ENSRNOT00000017624|Tenm3|ENSRNOG00000012802|teneurin transmembrane protein 3 [Source:RGD Symbol%3BAcc:1306641]
rn6_v1_chr2_+_220432037_220432037	0.0216257	Emx1_Emx2	ENSRNOT00000021988|Frrs1|ENSRNOG00000016351|ferric-chelate reductase 1 [Source:RGD Symbol%3BAcc:1306883]
rn6_v1_chr1_-_256734719_256734730	0.0214647	Emx1_Emx2	ENSRNOT00000021546|Myof|ENSRNOG00000016117|myoferlin [Source:RGD Symbol%3BAcc:1564216]	ENSRNOT00000089456|Myof|ENSRNOG00000016117|myoferlin [Source:RGD Symbol%3BAcc:1564216]
rn6_v1_chr6_-_23404368_23404368	0.0213835	Emx1_Emx2	ENSRNOT00000036374|Fam179a|ENSRNOG00000026344|family with sequence similarity 179%2C member A [Source:RGD Symbol%3BAcc:1310677]
rn6_v1_chr12_+_25435567_25435567	0.0211862	Emx1_Emx2	ENSRNOT00000092982|Gtf2i|ENSRNOG00000001479|general transcription factor II I [Source:RGD Symbol%3BAcc:727961]
rn6_v1_chr11_+_77644541_77644541	0.0207629	Emx1_Emx2	ENSRNOT00000074688|Tmem207|ENSRNOG00000048672|transmembrane protein 207 [Source:RGD Symbol%3BAcc:2322856]
rn6_v1_chr18_+_1866080_1866080	0.0205914	Emx1_Emx2	ENSRNOT00000018646|Snrpd1|ENSRNOG00000013714|small nuclear ribonucleoprotein D1 [Source:RGD Symbol%3BAcc:1306345]
rn6_v1_chr7_-_76488216_76488216	0.0203159	Emx1_Emx2	ENSRNOT00000080024|Ncald|ENSRNOG00000042978|neurocalcin delta [Source:RGD Symbol%3BAcc:1560287]
rn6_v1_chr2_+_232104809_232104809	0.0202428	Emx1_Emx2	ENSRNOT00000083193|Tifa|ENSRNOG00000010941|TRAF-interacting protein with forkhead-associated domain [Source:RGD Symbol%3BAcc:1359151]
rn6_v1_chr2_+_24668116_24668205	0.0201476	Emx1_Emx2	ENSRNOT00000067022|Wdr41|ENSRNOG00000025462|WD repeat domain 41 [Source:RGD Symbol%3BAcc:1306363]	ENSRNOT00000036748|Wdr41|ENSRNOG00000025462|WD repeat domain 41 [Source:RGD Symbol%3BAcc:1306363]
rn6_v1_chrM_+_11736_11736	0.0200884	Emx1_Emx2	ENSRNOT00000048767|Mt-nd5|ENSRNOG00000029971|mitochondrially encoded NADH dehydrogenase 5 [Source:RGD Symbol%3BAcc:620560]
rn6_v1_chrX_+_131381134_131381134	0.0199431	Emx1_Emx2	ENSRNOT00000007474|AABR07041481.1|ENSRNOG00000005665|
rn6_v1_chr5_+_145145983_145145983	0.0199203	Emx1_Emx2	ENSRNOT00000079732|Zmym6|ENSRNOG00000013865|zinc finger MYM-type containing 6 [Source:RGD Symbol%3BAcc:1561833]
rn6_v1_chr7_-_80457816_80457816	0.0198418	Emx1_Emx2	ENSRNOT00000039430|AABR07057617.1|ENSRNOG00000057824|
rn6_v1_chr13_+_57243877_57243877	0.0195806	Emx1_Emx2	ENSRNOT00000083693|Kcnt2|ENSRNOG00000013312|potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol%3BAcc:735074]
rn6_v1_chr2_+_18392142_18392142	0.0188332	Emx1_Emx2	ENSRNOT00000043196|Hapln1|ENSRNOG00000032002|hyaluronan and proteoglycan link protein 1 [Source:RGD Symbol%3BAcc:2412]
rn6_v1_chr15_+_52265557_52265557	0.0187582	Emx1_Emx2	ENSRNOT00000015969|Nudt18|ENSRNOG00000011831|nudix hydrolase 18 [Source:RGD Symbol%3BAcc:1311802]
rn6_v1_chr5_+_33784715_33784715	0.018443	Emx1_Emx2	ENSRNOT00000035685|Slc7a13|ENSRNOG00000024903|solute carrier family 7 member 13 [Source:RGD Symbol%3BAcc:1311633]
rn6_v1_chr4_+_35279063_35279063	0.0183791	Emx1_Emx2	ENSRNOT00000011833|Nxph1|ENSRNOG00000008939|neurexophilin 1 [Source:RGD Symbol%3BAcc:3218]
rn6_v1_chr1_+_128637049_128637049	0.0183137	Emx1_Emx2	ENSRNOT00000018639|Ttc23|ENSRNOG00000013877|tetratricopeptide repeat domain 23 [Source:RGD Symbol%3BAcc:1310409]
rn6_v1_chr6_+_137323713_137323713	0.0179636	Emx1_Emx2	ENSRNOT00000029017|Pld4|ENSRNOG00000028566|phospholipase D family%2C member 4 [Source:RGD Symbol%3BAcc:1598308]
rn6_v1_chr9_+_94525925_94525925	0.0177497	Emx1_Emx2	ENSRNOT00000075967|Gigyf2|ENSRNOG00000023577|GRB10 interacting GYF protein 2 [Source:RGD Symbol%3BAcc:2318130]
rn6_v1_chr15_-_14510828_14510828	0.0176272	Emx1_Emx2	ENSRNOT00000039347|Sntn|ENSRNOG00000027383|sentan%2C cilia apical structure protein [Source:RGD Symbol%3BAcc:1562356]
rn6_v1_chr17_-_76281660_76281660	0.0176116	Emx1_Emx2	ENSRNOT00000058070|Upf2|ENSRNOG00000023593|UPF2 regulator of nonsense transcripts homolog (yeast) [Source:RGD Symbol%3BAcc:1309178]
rn6_v1_chr4_+_31704747_31704747	0.0175826	Emx1_Emx2	ENSRNOT00000047850|AABR07059675.1|ENSRNOG00000029278|
rn6_v1_chr4_+_173732248_173732248	0.0175738	Emx1_Emx2	ENSRNOT00000041499|Pik3c2g|ENSRNOG00000034228|phosphatidylinositol-4-phosphate 3-kinase%2C catalytic subunit type 2 gamma [Source:RGD Symbol%3BAcc:620231]
rn6_v1_chr15_-_29548400_29548400	0.017377	Emx1_Emx2	ENSRNOT00000078176|AABR07017639.2|ENSRNOG00000055238|
rn6_v1_chr3_-_21904133_21904270	0.0168738	Emx1_Emx2	ENSRNOT00000090576|Strbp|ENSRNOG00000010150|spermatid perinuclear RNA binding protein [Source:RGD Symbol%3BAcc:620673]	ENSRNOT00000087611|Strbp|ENSRNOG00000010150|spermatid perinuclear RNA binding protein [Source:RGD Symbol%3BAcc:620673]	ENSRNOT00000066377|Strbp|ENSRNOG00000010150|spermatid perinuclear RNA binding protein [Source:RGD Symbol%3BAcc:620673]
rn6_v1_chr1_-_167911961_167911961	0.0167419	Emx1_Emx2	ENSRNOT00000025097|Olr59|ENSRNOG00000018606|olfactory receptor 59 [Source:RGD Symbol%3BAcc:628858]
rn6_v1_chr6_-_14523961_14523961	0.016687	Emx1_Emx2	ENSRNOT00000071402|Nrxn1|ENSRNOG00000050220|neurexin 1 [Source:RGD Symbol%3BAcc:628659]
rn6_v1_chr14_-_106248539_106248539	0.0166696	Emx1_Emx2	ENSRNOT00000067668|Ugp2|ENSRNOG00000008079|UDP-glucose pyrophosphorylase 2 [Source:RGD Symbol%3BAcc:1310210]
rn6_v1_chr2_-_186245342_186245361	0.0165123	Emx1_Emx2	ENSRNOT00000057062|Dclk2|ENSRNOG00000016550|doublecortin-like kinase 2 [Source:RGD Symbol%3BAcc:1308384]	ENSRNOT00000022292|Dclk2|ENSRNOG00000016550|doublecortin-like kinase 2 [Source:RGD Symbol%3BAcc:1308384]
rn6_v1_chr16_-_64806050_64806050	0.0164933	Emx1_Emx2	ENSRNOT00000015725|Dusp26|ENSRNOG00000011518|dual specificity phosphatase 26 [Source:RGD Symbol%3BAcc:1310090]
rn6_v1_chr14_+_69800156_69800156	0.0164663	Emx1_Emx2	ENSRNOT00000072746|Lcorl|ENSRNOG00000003787|ligand dependent nuclear receptor corepressor-like [Source:RGD Symbol%3BAcc:1561241]
rn6_v1_chrX_-_139916883_139916883	0.0164284	Emx1_Emx2	ENSRNOT00000090442|Gpc3|ENSRNOG00000060179|glypican 3 [Source:RGD Symbol%3BAcc:2725]
rn6_v1_chr13_+_105684420_105684420	0.0163464	Emx1_Emx2	ENSRNOT00000040543|Gpatch2|ENSRNOG00000002512|G patch domain containing 2 [Source:RGD Symbol%3BAcc:1308865]
rn6_v1_chr20_-_45126062_45126062	0.0162372	Emx1_Emx2	ENSRNOT00000000720|RGD1310495|ENSRNOG00000000589|similar to KIAA1919 protein [Source:RGD Symbol%3BAcc:1310495]
rn6_v1_chr7_+_91384187_91384187	0.0162331	Emx1_Emx2	ENSRNOT00000005828|Utp23|ENSRNOG00000004387|UTP23%2C small subunit processome component [Source:RGD Symbol%3BAcc:1307179]
rn6_v1_chr2_-_250923744_250923744	0.0161942	Emx1_Emx2	ENSRNOT00000084996|Clca1|ENSRNOG00000060831|chloride channel accessory 1 [Source:RGD Symbol%3BAcc:1306258]
rn6_v1_chr14_+_108415068_108415068	0.0161452	Emx1_Emx2	ENSRNOT00000083763|Pus10|ENSRNOG00000054151|pseudouridylate synthase 10 [Source:RGD Symbol%3BAcc:1306402]
rn6_v1_chr7_-_143497108_143497108	0.0160935	Emx1_Emx2	ENSRNOT00000048613|Krt76|ENSRNOG00000031785|keratin 76 [Source:RGD Symbol%3BAcc:1303078]
rn6_v1_chr6_+_132551394_132551394	0.0160796	Emx1_Emx2	ENSRNOT00000019583|Evl|ENSRNOG00000014476|Enah/Vasp-like [Source:RGD Symbol%3BAcc:621150]
rn6_v1_chrM_+_7006_7006	0.0160296	Emx1_Emx2	ENSRNOT00000043693|Mt-co2|ENSRNOG00000030371|mitochondrially encoded cytochrome c oxidase II [Source:RGD Symbol%3BAcc:621872]
rn6_v1_chr8_+_79638696_79638696	0.0158798	Emx1_Emx2	ENSRNOT00000085959|Dyx1c1|ENSRNOG00000056654|dyslexia susceptibility 1 candidate 1 [Source:RGD Symbol%3BAcc:1549760]
rn6_v1_chr11_+_61605937_61606006	0.0158705	Emx1_Emx2	ENSRNOT00000093455|Gramd1c|ENSRNOG00000053406|GRAM domain containing 1C [Source:RGD Symbol%3BAcc:1305433]	ENSRNOT00000093242|Gramd1c|ENSRNOG00000053406|GRAM domain containing 1C [Source:RGD Symbol%3BAcc:1305433]
rn6_v1_chr6_+_91532467_91532469	0.0157209	Emx1_Emx2	ENSRNOT00000082500|Klhdc1|ENSRNOG00000004425|kelch domain containing 1 [Source:RGD Symbol%3BAcc:1308211]	ENSRNOT00000064668|Klhdc1|ENSRNOG00000004425|kelch domain containing 1 [Source:RGD Symbol%3BAcc:1308211]
rn6_v1_chr8_-_126390801_126390801	0.0156564	Emx1_Emx2	ENSRNOT00000089732|AABR07071661.1|ENSRNOG00000053820|
rn6_v1_chr14_+_58877806_58877806	0.0153544	Emx1_Emx2	ENSRNOT00000051559|RGD1562755|ENSRNOG00000028963|similar to 60S ribosomal protein L23a [Source:RGD Symbol%3BAcc:1562755]
rn6_v1_chr1_-_101131413_101131413	0.0151134	Emx1_Emx2	ENSRNOT00000093729|Flt3lg|ENSRNOG00000056212|fms-related tyrosine kinase 3 ligand [Source:RGD Symbol%3BAcc:2322792]
rn6_v1_chr2_+_88217188_88217188	0.0151054	Emx1_Emx2	ENSRNOT00000014267|Car1|ENSRNOG00000010698|carbonic anhydrase I [Source:RGD Symbol%3BAcc:1309780]
rn6_v1_chr13_-_102942863_102942863	0.0148733	Emx1_Emx2	ENSRNOT00000003198|Mark1|ENSRNOG00000002339|microtubule affinity regulating kinase 1 [Source:RGD Symbol%3BAcc:619882]
rn6_v1_chr6_+_109617596_109617643	0.0147925	Emx1_Emx2	ENSRNOT00000085031|Flvcr2|ENSRNOG00000008754|feline leukemia virus subgroup C cellular receptor family%2C member 2 [Source:RGD Symbol%3BAcc:735098]	ENSRNOT00000089972|Flvcr2|ENSRNOG00000008754|feline leukemia virus subgroup C cellular receptor family%2C member 2 [Source:RGD Symbol%3BAcc:735098]	ENSRNOT00000082402|Flvcr2|ENSRNOG00000008754|feline leukemia virus subgroup C cellular receptor family%2C member 2 [Source:RGD Symbol%3BAcc:735098]
rn6_v1_chr13_+_76942928_76942928	0.0146114	Emx1_Emx2	ENSRNOT00000040505|Rfwd2|ENSRNOG00000042492|ring finger and WD repeat domain 2 [Source:RGD Symbol%3BAcc:1304773]
rn6_v1_chr1_+_156552328_156552328	0.0143254	Emx1_Emx2	ENSRNOT00000055401|Dlg2|ENSRNOG00000022635|discs large MAGUK scaffold protein 2 [Source:RGD Symbol%3BAcc:619895]
rn6_v1_chr13_-_105684374_105684374	0.0142494	Emx1_Emx2	ENSRNOT00000073142|Spata17|ENSRNOG00000002504|spermatogenesis associated 17 [Source:RGD Symbol%3BAcc:1565282]
rn6_v1_chr1_-_183763664_183763664	0.0139806	Emx1_Emx2	ENSRNOT00000044231|LOC691427|ENSRNOG00000032130|similar to 6.8 kDa mitochondrial proteolipid [Source:RGD Symbol%3BAcc:1583946]
rn6_v1_chr1_-_133503194_133503194	0.0137611	Emx1_Emx2	ENSRNOT00000077049|Mctp2|ENSRNOG00000009932|multiple C2 and transmembrane domain containing 2 [Source:RGD Symbol%3BAcc:1562967]
rn6_v1_chr10_+_90377103_90377103	0.0131016	Emx1_Emx2	ENSRNOT00000040472|Grn|ENSRNOG00000021031|granulin precursor [Source:RGD Symbol%3BAcc:61983]
rn6_v1_chr12_+_41486076_41486076	0.0130691	Emx1_Emx2	ENSRNOT00000057242|Rita1|ENSRNOG00000037720|RBPJ interacting and tubulin associated 1 [Source:RGD Symbol%3BAcc:1306772]
rn6_v1_chr1_+_21613148_21613148	0.0130412	Emx1_Emx2	ENSRNOT00000018695|Enpp3|ENSRNOG00000013791|ectonucleotide pyrophosphatase/phosphodiesterase 3 [Source:RGD Symbol%3BAcc:708511]
rn6_v1_chr1_-_246010594_246010594	0.0127654	Emx1_Emx2	ENSRNOT00000023762|Rfx3|ENSRNOG00000014486|regulatory factor X3 [Source:RGD Symbol%3BAcc:1307779]
rn6_v1_chr4_+_88423412_88423412	0.0125703	Emx1_Emx2	ENSRNOT00000040163|Vom1r88|ENSRNOG00000031987|vomeronasal 1 receptor 88 [Source:RGD Symbol%3BAcc:1549699]
rn6_v1_chr3_-_150156839_150156839	0.011784	Emx1_Emx2	ENSRNOT00000036217|LOC103691939|ENSRNOG00000029996|elongation factor 1-alpha 1 pseudogene [Source:RGD Symbol%3BAcc:9202998]
rn6_v1_chr18_+_70739492_70739492	0.011763	Emx1_Emx2	ENSRNOT00000085601|Acaa2|ENSRNOG00000013766|acetyl-CoA acyltransferase 2 [Source:RGD Symbol%3BAcc:620482]
rn6_v1_chr1_+_81499821_81499821	0.0117162	Emx1_Emx2	ENSRNOT00000027100|Lypd3|ENSRNOG00000019999|Ly6/Plaur domain containing 3 [Source:RGD Symbol%3BAcc:69053]
rn6_v1_chr6_+_129609375_129609375	0.0115982	Emx1_Emx2	ENSRNOT00000083732|Papola|ENSRNOG00000004827|poly (A) polymerase alpha [Source:RGD Symbol%3BAcc:1308673]
rn6_v1_chr1_-_78180216_78180216	0.0114251	Emx1_Emx2	ENSRNOT00000071576|C5ar2|ENSRNOG00000049028|complement component 5a receptor 2 [Source:RGD Symbol%3BAcc:1303027]
rn6_v1_chr10_+_90376933_90376933	0.0112256	Emx1_Emx2	ENSRNOT00000028557|Grn|ENSRNOG00000021031|granulin precursor [Source:RGD Symbol%3BAcc:61983]
rn6_v1_chr10_+_45307007_45307007	0.0111399	Emx1_Emx2	ENSRNOT00000003885|Trim17|ENSRNOG00000022983|tripartite motif-containing 17 [Source:RGD Symbol%3BAcc:69290]
rn6_v1_chr1_-_252461461_252461461	0.0110579	Emx1_Emx2	ENSRNOT00000026093|Ankrd22|ENSRNOG00000019190|ankyrin repeat domain 22 [Source:RGD Symbol%3BAcc:1307862]
rn6_v1_chr2_+_55747318_55747318	0.0109234	Emx1_Emx2	ENSRNOT00000050655|Dab2|ENSRNOG00000028930|DAB2%2C clathrin adaptor protein [Source:RGD Symbol%3BAcc:621007]
rn6_v1_chr16_+_2537248_2537248	0.0108048	Emx1_Emx2	ENSRNOT00000017995|Asb14|ENSRNOG00000013346|ankyrin repeat and SOCS box-containing 14 [Source:RGD Symbol%3BAcc:1596812]
rn6_v1_chrX_+_9956370_9956370	0.0106675	Emx1_Emx2	ENSRNOT00000082316|LOC100910506|ENSRNOG00000060946|peripheral plasma membrane protein CASK-like [Source:RGD Symbol%3BAcc:6498449]
rn6_v1_chr5_-_162602339_162602339	0.0106129	Emx1_Emx2	ENSRNOT00000071779|RGD1563334|ENSRNOG00000050089|similar to novel protein similar to esterases [Source:RGD Symbol%3BAcc:1563334]
rn6_v1_chr17_+_53965562_53965562	0.0105644	Emx1_Emx2	ENSRNOT00000090387|Ggps1|ENSRNOG00000016767|geranylgeranyl diphosphate synthase 1 [Source:RGD Symbol%3BAcc:1359680]
rn6_v1_chr15_-_28044210_28044210	0.0104979	Emx1_Emx2	ENSRNOT00000033809|Rnase1l1|ENSRNOG00000025615|ribonuclease%2C RNase A family%2C 1-like 1 (pancreatic) [Source:RGD Symbol%3BAcc:1310106]
rn6_v1_chr20_-_3166569_3166569	0.0104963	Emx1_Emx2	ENSRNOT00000091390|AABR07044362.1|ENSRNOG00000058490|
rn6_v1_chr11_+_80742467_80742467	0.0104363	Emx1_Emx2	ENSRNOT00000002507|Masp1|ENSRNOG00000001827|mannan-binding lectin serine peptidase 1 [Source:RGD Symbol%3BAcc:620213]
rn6_v1_chr3_-_161246351_161246351	0.0103141	Emx1_Emx2	ENSRNOT00000020348|Tnnc2|ENSRNOG00000015155|troponin C2%2C fast skeletal type [Source:RGD Symbol%3BAcc:1311973]
rn6_v1_chr2_+_240642847_240642847	0.0100492	Emx1_Emx2	ENSRNOT00000079694|Ube2d3|ENSRNOG00000013741|ubiquitin-conjugating enzyme E2D 3 [Source:RGD Symbol%3BAcc:619912]
rn6_v1_chr10_-_86393141_86393141	0.0100265	Emx1_Emx2	ENSRNOT00000009485|Mien1|ENSRNOG00000007227|migration and invasion enhancer 1 [Source:RGD Symbol%3BAcc:1306682]
rn6_v1_chr7_-_104541392_104541392	0.00976388	Emx1_Emx2	ENSRNOT00000078116|Fam49b|ENSRNOG00000061246|family with sequence similarity 49%2C member B [Source:RGD Symbol%3BAcc:1307697]
rn6_v1_chrX_-_72034099_72034099	0.00962837	Emx1_Emx2	ENSRNOT00000004310|Ercc6l|ENSRNOG00000003208|ERCC excision repair 6 like%2C spindle assembly checkpoint helicase [Source:RGD Symbol%3BAcc:1565734]
rn6_v1_chr9_+_95398237_95398237	0.00948139	Emx1_Emx2	ENSRNOT00000025879|Trpm8|ENSRNOG00000019035|transient receptor potential cation channel%2C subfamily M%2C member 8 [Source:RGD Symbol%3BAcc:620762]
rn6_v1_chr17_+_36691875_36691875	0.00905521	Emx1_Emx2	ENSRNOT00000074314|LOC688583|ENSRNOG00000050910|similar to High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a) [Source:RGD Symbol%3BAcc:1587596]
rn6_v1_chr11_+_31539016_31539016	0.00877022	Emx1_Emx2	ENSRNOT00000072856|Ifnar2|ENSRNOG00000045668|interferon alpha and beta receptor subunit 2 [Source:RGD Symbol%3BAcc:1583177]
rn6_v1_chr8_+_111790678_111790678	0.00863485	Emx1_Emx2	ENSRNOT00000013265|Topbp1|ENSRNOG00000009789|topoisomerase (DNA) II binding protein 1 [Source:RGD Symbol%3BAcc:1562949]
rn6_v1_chr1_-_252116971_252116971	0.00807772	Emx1_Emx2	ENSRNOT00000035013|Lipo1|ENSRNOG00000025444|lipase%2C member O1 [Source:RGD Symbol%3BAcc:1565682]
rn6_v1_chr7_-_144993652_144993652	0.0080022	Emx1_Emx2	ENSRNOT00000087748|Itga5|ENSRNOG00000057451|integrin subunit alpha 5 [Source:RGD Symbol%3BAcc:2925]
rn6_v1_chr3_-_104504204_104504204	0.00789253	Emx1_Emx2	ENSRNOT00000049582|Ryr3|ENSRNOG00000006645|ryanodine receptor 3 [Source:RGD Symbol%3BAcc:68952]
rn6_v1_chr1_+_166983175_166983175	0.00788803	Emx1_Emx2	ENSRNOT00000027028|Anapc15|ENSRNOG00000019936|anaphase promoting complex subunit 15 [Source:RGD Symbol%3BAcc:1311634]
rn6_v1_chr2_+_166348373_166348373	0.00770319	Emx1_Emx2	ENSRNOT00000033132|RGD1563620|ENSRNOG00000028052|similar to retinoblastoma binding protein 4 [Source:RGD Symbol%3BAcc:1563620]
rn6_v1_chr1_+_22364551_22364551	0.00769268	Emx1_Emx2	ENSRNOT00000043157|LOC108348200|ENSRNOG00000048934|trace amine-associated receptor 8a [Source:RGD Symbol%3BAcc:11501093]
rn6_v1_chr19_-_10513349_10513349	0.00760596	Emx1_Emx2	ENSRNOT00000061270|Adgrg5|ENSRNOG00000039891|adhesion G protein-coupled receptor G5 [Source:RGD Symbol%3BAcc:1305559]
rn6_v1_chr2_+_2903492_2903492	0.00754623	Emx1_Emx2	ENSRNOT00000062017|Ttc37|ENSRNOG00000040297|tetratricopeptide repeat domain 37 [Source:RGD Symbol%3BAcc:1306062]
rn6_v1_chr19_-_14945302_14945302	0.00752541	Emx1_Emx2	ENSRNOT00000079391|AABR07042936.2|ENSRNOG00000057497|
rn6_v1_chr9_+_66058047_66058047	0.00750862	Emx1_Emx2	ENSRNOT00000071819|Cdk15|ENSRNOG00000022899|cyclin-dependent kinase 15 [Source:RGD Symbol%3BAcc:1306205]
rn6_v1_chr9_+_95161157_95161157	0.00749321	Emx1_Emx2	ENSRNOT00000071200|Ugt1a5|ENSRNOG00000018740|UDP glucuronosyltransferase family 1 member A5 [Source:RGD Symbol%3BAcc:1583689]
rn6_v1_chrM_+_10160_10160	0.00735165	Emx1_Emx2	ENSRNOT00000042928|Mt-nd4|ENSRNOG00000029707|mitochondrially encoded NADH dehydrogenase 4 [Source:RGD Symbol%3BAcc:620559]
rn6_v1_chrX_-_62690806_62690806	0.00728707	Emx1_Emx2	ENSRNOT00000018147|Pola1|ENSRNOG00000013322|DNA polymerase alpha 1%2C catalytic subunit [Source:RGD Symbol%3BAcc:621816]
rn6_v1_chr5_+_108278217_108278217	0.00705737	Emx1_Emx2	ENSRNOT00000038972|Dmrta1|ENSRNOG00000024093|DMRT-like family A1 [Source:RGD Symbol%3BAcc:1309796]
rn6_v1_chr6_-_54059119_54059119	0.00685119	Emx1_Emx2	ENSRNOT00000005521|Hdac9|ENSRNOG00000004158|histone deacetylase 9 [Source:RGD Symbol%3BAcc:1310748]
rn6_v1_chr2_-_149444548_149444548	0.00682364	Emx1_Emx2	ENSRNOT00000018600|P2ry12|ENSRNOG00000013902|purinergic receptor P2Y12 [Source:RGD Symbol%3BAcc:621681]
rn6_v1_chr8_+_70447040_70447040	0.00661971	Emx1_Emx2	ENSRNOT00000016798|Ints14|ENSRNOG00000012469|integrator complex subunit 14 [Source:RGD Symbol%3BAcc:1359616]
rn6_v1_chr14_-_45165207_45165207	0.00619373	Emx1_Emx2	ENSRNOT00000002960|Klf3|ENSRNOG00000002163|Kruppel like factor 3 [Source:RGD Symbol%3BAcc:1593290]
rn6_v1_chr2_+_41442241_41442241	0.00619161	Emx1_Emx2	ENSRNOT00000067546|Pde4d|ENSRNOG00000042536|phosphodiesterase 4D [Source:RGD Symbol%3BAcc:3281]
rn6_v1_chr17_-_21577085_21577085	0.00609945	Emx1_Emx2	ENSRNOT00000020737|Tmem14c|ENSRNOG00000015437|transmembrane protein 14C [Source:RGD Symbol%3BAcc:621692]
rn6_v1_chr17_-_76250537_76250537	0.00600638	Emx1_Emx2	ENSRNOT00000092693|Upf2|ENSRNOG00000023593|UPF2 regulator of nonsense transcripts homolog (yeast) [Source:RGD Symbol%3BAcc:1309178]
rn6_v1_chr6_+_18880737_18880737	0.00598723	Emx1_Emx2	ENSRNOT00000003432|Alkbh8|ENSRNOG00000024525|alkB homolog 8%2C tRNA methyltransferase [Source:RGD Symbol%3BAcc:1304687]
rn6_v1_chr2_+_118831350_118831350	0.00591429	Emx1_Emx2	ENSRNOT00000083720|Pik3ca|ENSRNOG00000056371|phosphatidylinositol-4%2C5-bisphosphate 3-kinase%2C catalytic subunit alpha [Source:RGD Symbol%3BAcc:620916]
rn6_v1_chr2_-_122641409_122641409	0.00586914	Emx1_Emx2	ENSRNOT00000068334|Dcun1d1|ENSRNOG00000012734|defective in cullin neddylation 1 domain containing 1 [Source:RGD Symbol%3BAcc:1309668]
rn6_v1_chr8_-_55144087_55144087	0.00566636	Emx1_Emx2	ENSRNOT00000039045|Dixdc1|ENSRNOG00000010260|DIX domain containing 1 [Source:RGD Symbol%3BAcc:1309902]
rn6_v1_chr5_+_167141875_167141875	0.00561698	Emx1_Emx2	ENSRNOT00000089314|Slc2a5|ENSRNOG00000017693|solute carrier family 2 member 5 [Source:RGD Symbol%3BAcc:68328]
rn6_v1_chr1_+_79631668_79631812	0.00561036	Emx1_Emx2	ENSRNOT00000083546|Mill1|ENSRNOG00000017699|MHC I like leukocyte 1 [Source:RGD Symbol%3BAcc:1311714]	ENSRNOT00000035286|Mill1|ENSRNOG00000017699|MHC I like leukocyte 1 [Source:RGD Symbol%3BAcc:1311714]
rn6_v1_chr10_-_88000423_88000534	0.0055813	Emx1_Emx2	ENSRNOT00000076787|Krt32|ENSRNOG00000013611|keratin 32 [Source:RGD Symbol%3BAcc:1359701]	ENSRNOT00000046751|Krt32|ENSRNOG00000013611|keratin 32 [Source:RGD Symbol%3BAcc:1359701]	ENSRNOT00000091394|Krt32|ENSRNOG00000013611|keratin 32 [Source:RGD Symbol%3BAcc:1359701]
rn6_v1_chr1_+_61786900_61786900	0.0055431	Emx1_Emx2	ENSRNOT00000090287|AABR07001905.1|ENSRNOG00000057250|
rn6_v1_chr15_+_34234755_34234755	0.00554307	Emx1_Emx2	ENSRNOT00000059987|Dcaf11|ENSRNOG00000018825|DDB1 and CUL4 associated factor 11 [Source:RGD Symbol%3BAcc:1311288]
rn6_v1_chr17_+_63635086_63635086	0.00538291	Emx1_Emx2	ENSRNOT00000020634|Dip2c|ENSRNOG00000015288|disco-interacting protein 2 homolog C [Source:RGD Symbol%3BAcc:1560155]
rn6_v1_chr2_+_248398917_248398917	0.00528973	Emx1_Emx2	ENSRNOT00000045855|Gbp1|ENSRNOG00000023943|guanylate binding protein 1 [Source:RGD Symbol%3BAcc:1311877]
rn6_v1_chr8_-_128711221_128711221	0.00503963	Emx1_Emx2	ENSRNOT00000055888|Xirp1|ENSRNOG00000037085|xin actin-binding repeat containing 1 [Source:RGD Symbol%3BAcc:1304776]
rn6_v1_chr5_+_150459713_150459745	0.00499042	Emx1_Emx2	ENSRNOT00000081681|Taf12|ENSRNOG00000048288|TATA-box binding protein associated factor 12 [Source:RGD Symbol%3BAcc:1592841]	ENSRNOT00000074251|Taf12|ENSRNOG00000048288|TATA-box binding protein associated factor 12 [Source:RGD Symbol%3BAcc:1592841]
rn6_v1_chr19_-_11669578_11669578	0.00491992	Emx1_Emx2	ENSRNOT00000026373|Gnao1|ENSRNOG00000019482|G protein subunit alpha o1 [Source:RGD Symbol%3BAcc:628732]
rn6_v1_chr15_-_52399074_52399074	0.00491832	Emx1_Emx2	ENSRNOT00000018440|Xpo7|ENSRNOG00000013288|exportin 7 [Source:RGD Symbol%3BAcc:1310928]
rn6_v1_chr4_+_163349125_163349125	0.00488423	Emx1_Emx2	ENSRNOT00000084823|Klre1|ENSRNOG00000058714|killer cell lectin-like receptor%2C family E%2C member 1 [Source:RGD Symbol%3BAcc:727903]
rn6_v1_chr5_-_164648328_164648328	0.00479344	Emx1_Emx2	ENSRNOT00000090811|Zfp933|ENSRNOG00000056374|zinc finger protein 933 [Source:MGI Symbol%3BAcc:MGI:1922865]
rn6_v1_chr11_-_60546997_60546997	0.004719	Emx1_Emx2	ENSRNOT00000083124|Btla|ENSRNOG00000030246|B and T lymphocyte associated [Source:RGD Symbol%3BAcc:1303280]	ENSRNOT00000050092|Btla|ENSRNOG00000030246|B and T lymphocyte associated [Source:RGD Symbol%3BAcc:1303280]
rn6_v1_chr20_+_3155652_3155652	0.0046907	Emx1_Emx2	ENSRNOT00000042882|RT1-S2|ENSRNOG00000029001|RT1 class Ib%2C locus S2 [Source:RGD Symbol%3BAcc:1595920]
rn6_v1_chr13_+_92264231_92264231	0.00467199	Emx1_Emx2	ENSRNOT00000066509|Spta1|ENSRNOG00000003537|spectrin%2C alpha%2C erythrocytic 1 [Source:RGD Symbol%3BAcc:1305194]	ENSRNOT00000004716|Spta1|ENSRNOG00000003537|spectrin%2C alpha%2C erythrocytic 1 [Source:RGD Symbol%3BAcc:1305194]
rn6_v1_chr9_-_97290639_97290639	0.00465703	Emx1_Emx2	ENSRNOT00000026491|Iqca1|ENSRNOG00000019592|IQ motif containing with AAA domain 1 [Source:RGD Symbol%3BAcc:1305311]	ENSRNOT00000056724|Iqca1|ENSRNOG00000019592|IQ motif containing with AAA domain 1 [Source:RGD Symbol%3BAcc:1305311]
rn6_v1_chr3_+_48096954_48096954	0.00462856	Emx1_Emx2	ENSRNOT00000068238|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]	ENSRNOT00000064344|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]	ENSRNOT00000044638|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]
rn6_v1_chr17_+_89951752_89951815	0.00456058	Emx1_Emx2	ENSRNOT00000057572|Abi1|ENSRNOG00000031325|abl-interactor 1 [Source:RGD Symbol%3BAcc:621008]	ENSRNOT00000091023|Abi1|ENSRNOG00000031325|abl-interactor 1 [Source:RGD Symbol%3BAcc:621008]
rn6_v1_chr7_+_23854846_23854846	0.00452576	Emx1_Emx2	ENSRNOT00000037290|Bpifc|ENSRNOG00000022937|BPI fold containing family C [Source:RGD Symbol%3BAcc:1311686]
rn6_v1_chr5_-_58288125_58288125	0.00450752	Emx1_Emx2	ENSRNOT00000068752|Fam205a|ENSRNOG00000042596|family with sequence similarity 205%2C member A [Source:RGD Symbol%3BAcc:2320471]
rn6_v1_chr2_+_52431601_52431601	0.00449945	Emx1_Emx2	ENSRNOT00000023554|Hmgcs1|ENSRNOG00000016552|3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:RGD Symbol%3BAcc:70970]
rn6_v1_chr1_+_170147300_170147300	0.00436146	Emx1_Emx2	ENSRNOT00000048075|Olr200|ENSRNOG00000048852|olfactory receptor 200 [Source:RGD Symbol%3BAcc:1334048]
rn6_v1_chr16_-_54137660_54137660	0.00430487	Emx1_Emx2	ENSRNOT00000085435|Pcm1|ENSRNOG00000010155|pericentriolar material 1 [Source:RGD Symbol%3BAcc:620901]
rn6_v1_chrX_-_23469041_23469041	0.00426793	Emx1_Emx2	ENSRNOT00000065789|LOC685699|ENSRNOG00000043358|hypothetical protein LOC685699 [Source:RGD Symbol%3BAcc:1591314]
rn6_v1_chr6_-_23291568_23291568	0.00426174	Emx1_Emx2	ENSRNOT00000085708|Clip4|ENSRNOG00000008806|CAP-GLY domain containing linker protein family%2C member 4 [Source:RGD Symbol%3BAcc:1311049]
rn6_v1_chr9_-_104467973_104467973	0.00423339	Emx1_Emx2	ENSRNOT00000026099|Slco6b1|ENSRNOG00000019252|solute carrier organic anion transporter family member 6B1 [Source:RGD Symbol%3BAcc:620278]
rn6_v1_chrX_+_37329779_37329817	0.00404484	Emx1_Emx2	ENSRNOT00000038352|Pdha1|ENSRNOG00000025383|pyruvate dehydrogenase (lipoamide) alpha 1 [Source:RGD Symbol%3BAcc:3286]	ENSRNOT00000088802|Pdha1|ENSRNOG00000025383|pyruvate dehydrogenase (lipoamide) alpha 1 [Source:RGD Symbol%3BAcc:3286]
rn6_v1_chr14_-_114692764_114692764	0.00394276	Emx1_Emx2	ENSRNOT00000008210|Sptbn1|ENSRNOG00000005434|spectrin%2C beta%2C non-erythrocytic 1 [Source:RGD Symbol%3BAcc:727922]
rn6_v1_chr1_-_141533908_141533908	0.00386967	Emx1_Emx2	ENSRNOT00000020117|Mesp1|ENSRNOG00000014951|mesoderm posterior bHLH transcription factor 1 [Source:RGD Symbol%3BAcc:1311751]
rn6_v1_chr6_-_18351536_18351536	0.00378666	Emx1_Emx2	ENSRNOT00000061588|Crnkl1|ENSRNOG00000040045|crooked neck pre-mRNA splicing factor 1 [Source:RGD Symbol%3BAcc:620507]
rn6_v1_chr13_+_88265331_88265331	0.00378083	Emx1_Emx2	ENSRNOT00000031190|Ccdc190|ENSRNOG00000025005|coiled-coil domain containing 190 [Source:RGD Symbol%3BAcc:1560672]
rn6_v1_chr15_-_59215803_59215803	0.00367142	Emx1_Emx2	ENSRNOT00000032301|Lacc1|ENSRNOG00000022094|laccase domain containing 1 [Source:RGD Symbol%3BAcc:1310185]
rn6_v1_chr16_-_37908173_37908173	0.00349768	Emx1_Emx2	ENSRNOT00000075026|Glra3|ENSRNOG00000049792|glycine receptor%2C alpha 3 [Source:RGD Symbol%3BAcc:621229]
rn6_v1_chr13_-_78521911_78521911	0.00347219	Emx1_Emx2	ENSRNOT00000087506|Rabgap1l|ENSRNOG00000002736|RAB GTPase activating protein 1-like [Source:RGD Symbol%3BAcc:1304620]
rn6_v1_chr16_-_54137485_54137485	0.00345761	Emx1_Emx2	ENSRNOT00000014202|Pcm1|ENSRNOG00000010155|pericentriolar material 1 [Source:RGD Symbol%3BAcc:620901]
rn6_v1_chr9_+_8093262_8093262	0.00328071	Emx1_Emx2	ENSRNOT00000080314|Adgre4|ENSRNOG00000050325|adhesion G protein-coupled receptor E4 [Source:RGD Symbol%3BAcc:1359641]
rn6_v1_chr1_-_23556241_23556241	0.00325662	Emx1_Emx2	ENSRNOT00000072943|LOC100910446|ENSRNOG00000048248|syntaxin-7-like [Source:RGD Symbol%3BAcc:6498726]
rn6_v1_chr4_+_8066737_8066737	0.0031669	Emx1_Emx2	ENSRNOT00000063994|Srpk2|ENSRNOG00000010601|SRSF protein kinase 2 [Source:RGD Symbol%3BAcc:1305107]
rn6_v1_chr17_-_32158538_32158538	0.00305523	Emx1_Emx2	ENSRNOT00000024141|Nqo2|ENSRNOG00000017820|NAD(P)H quinone dehydrogenase 2 [Source:RGD Symbol%3BAcc:1303320]
rn6_v1_chr1_-_238376841_238376841	0.00304743	Emx1_Emx2	ENSRNOT00000076393|Tmc1|ENSRNOG00000051262|transmembrane channel-like 1 [Source:RGD Symbol%3BAcc:1308682]
rn6_v1_chr3_+_2288667_2288667	0.00300792	Emx1_Emx2	ENSRNOT00000012289|Entpd8|ENSRNOG00000009239|ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol%3BAcc:1561793]
rn6_v1_chr13_+_47572219_47572275	0.00298107	Emx1_Emx2	ENSRNOT00000088449|Pigr|ENSRNOG00000004405|polymeric immunoglobulin receptor [Source:RGD Symbol%3BAcc:3328]	ENSRNOT00000087664|Pigr|ENSRNOG00000004405|polymeric immunoglobulin receptor [Source:RGD Symbol%3BAcc:3328]	ENSRNOT00000005853|Pigr|ENSRNOG00000004405|polymeric immunoglobulin receptor [Source:RGD Symbol%3BAcc:3328]
rn6_v1_chr7_+_122979021_122979021	0.00286906	Emx1_Emx2	ENSRNOT00000085707|Zc3h7b|ENSRNOG00000055925|zinc finger CCCH-type containing 7B [Source:RGD Symbol%3BAcc:1307064]
rn6_v1_chrX_+_54553878_54553878	0.00275459	Emx1_Emx2	ENSRNOT00000040231|Samt3|ENSRNOG00000029010|spermatogenesis associated multipass transmembrane protein 3 [Source:RGD Symbol%3BAcc:1583524]
rn6_v1_chrM_+_9870_9870	0.00250646	Emx1_Emx2	ENSRNOT00000044582|Mt-nd4l|ENSRNOG00000031053|mitochondrially encoded NADH 4L dehydrogenase [Source:RGD Symbol%3BAcc:620494]
rn6_v1_chr3_+_98695503_98695503	0.00232299	Emx1_Emx2	ENSRNOT00000042764|AABR07053304.1|ENSRNOG00000050529|
rn6_v1_chr10_+_62981297_62981297	0.00227281	Emx1_Emx2	ENSRNOT00000031618|Efcab5|ENSRNOG00000022536|EF-hand calcium binding domain 5 [Source:RGD Symbol%3BAcc:1309650]
rn6_v1_chr5_+_33097654_33097654	0.00226957	Emx1_Emx2	ENSRNOT00000008087|Cngb3|ENSRNOG00000006084|cyclic nucleotide gated channel beta 3 [Source:RGD Symbol%3BAcc:1565364]
rn6_v1_chr7_+_98432442_98432442	0.00223315	Emx1_Emx2	ENSRNOT00000038973|Fer1l6|ENSRNOG00000025300|fer-1-like family member 6 [Source:RGD Symbol%3BAcc:1564703]
rn6_v1_chrX_-_9999401_9999401	0.0022304	Emx1_Emx2	ENSRNOT00000060992|Gpr82|ENSRNOG00000039762|G protein-coupled receptor 82 [Source:RGD Symbol%3BAcc:2318147]
rn6_v1_chr7_+_70987861_70987861	0.00204777	Emx1_Emx2	ENSRNOT00000072906|Nemp1|ENSRNOG00000046492|nuclear envelope integral membrane protein 1 [Source:RGD Symbol%3BAcc:1587179]
rn6_v1_chr4_+_168775111_168775111	0.00189069	Emx1_Emx2	ENSRNOT00000011096|Ddx47|ENSRNOG00000007838|DEAD-box helicase 47 [Source:RGD Symbol%3BAcc:1310437]
rn6_v1_chr1_+_250426158_250426158	0.00177714	Emx1_Emx2	ENSRNOT00000067643|A1cf|ENSRNOG00000033195|APOBEC1 complementation factor [Source:RGD Symbol%3BAcc:619834]
rn6_v1_chr2_-_218658761_218658761	0.00157176	Emx1_Emx2	ENSRNOT00000018318|S1pr1|ENSRNOG00000013683|sphingosine-1-phosphate receptor 1 [Source:RGD Symbol%3BAcc:61958]
rn6_v1_chr3_+_146980923_146980923	0.00152449	Emx1_Emx2	ENSRNOT00000011654|Nsfl1c|ENSRNOG00000008604|NSFL1 cofactor [Source:RGD Symbol%3BAcc:619952]
rn6_v1_chr9_+_8054466_8054466	0.00150955	Emx1_Emx2	ENSRNOT00000081513|Adgre4|ENSRNOG00000050325|adhesion G protein-coupled receptor E4 [Source:RGD Symbol%3BAcc:1359641]
rn6_v1_chr2_-_227582895_227582895	0.00127499	Emx1_Emx2	ENSRNOT00000020574|Mettl14|ENSRNOG00000015250|methyltransferase like 14 [Source:RGD Symbol%3BAcc:1304822]
rn6_v1_chr12_+_47179664_47179664	0.00119216	Emx1_Emx2	ENSRNOT00000001551|Cabp1|ENSRNOG00000001173|calcium binding protein 1 [Source:RGD Symbol%3BAcc:620385]
rn6_v1_chr14_-_64476796_64476796	0.00114205	Emx1_Emx2	ENSRNOT00000029104|Gba3|ENSRNOG00000024634|glucosidase%2C beta%2C acid 3 [Source:RGD Symbol%3BAcc:1309539]
rn6_v1_chr16_+_84465656_84465656	0.00110769	Emx1_Emx2	ENSRNOT00000043188|LOC689713|ENSRNOG00000033703|LRRGT00175 [Source:RGD Symbol%3BAcc:1588775]
rn6_v1_chr6_+_95205153_95205153	0.00107384	Emx1_Emx2	ENSRNOT00000007339|Lrrc9|ENSRNOG00000005409|leucine rich repeat containing 9 [Source:RGD Symbol%3BAcc:1565716]
rn6_v1_chr5_+_15043955_15043955	0.00092257	Emx1_Emx2	ENSRNOT00000047093|Rp1|ENSRNOG00000008807|retinitis pigmentosa 1 [Source:RGD Symbol%3BAcc:1596713]
rn6_v1_chr8_+_85503224_85503224	0.000892981	Emx1_Emx2	ENSRNOT00000012348|Gsta4|ENSRNOG00000030449|glutathione S-transferase alpha 4 [Source:RGD Symbol%3BAcc:1309970]
rn6_v1_chr1_-_279277339_279277339	0.000759712	Emx1_Emx2	ENSRNOT00000023667|Gfra1|ENSRNOG00000017438|GDNF family receptor alpha 1 [Source:RGD Symbol%3BAcc:2681]
rn6_v1_chr20_-_54517709_54517709	0.000734323	Emx1_Emx2	ENSRNOT00000076234|Grik2|ENSRNOG00000000368|glutamate ionotropic receptor kainate type subunit 2 [Source:RGD Symbol%3BAcc:2733]
rn6_v1_chrX_-_135041027_135041027	0.000645163	Emx1_Emx2	ENSRNOT00000006484|Zdhhc9|ENSRNOG00000004581|zinc finger%2C DHHC-type containing 9 [Source:RGD Symbol%3BAcc:1561389]
rn6_v1_chrM_+_9451_9451	0.000598324	Emx1_Emx2	ENSRNOT00000041241|Mt-nd3|ENSRNOG00000033615|mitochondrially encoded NADH dehydrogenase 3 [Source:RGD Symbol%3BAcc:620557]
rn6_v1_chr8_-_14157141_14157141	0.000561752	Emx1_Emx2	ENSRNOT00000079034|Deup1|ENSRNOG00000061247|deuterosome assembly protein 1 [Source:RGD Symbol%3BAcc:1306632]
rn6_v1_chr10_-_57275708_57275708	0.000557353	Emx1_Emx2	ENSRNOT00000005370|Pfn1|ENSRNOG00000003975|profilin 1 [Source:RGD Symbol%3BAcc:621825]
rn6_v1_chr2_-_227582594_227582594	0.000553709	Emx1_Emx2	ENSRNOT00000065222|Mettl14|ENSRNOG00000015250|methyltransferase like 14 [Source:RGD Symbol%3BAcc:1304822]
rn6_v1_chr17_-_62299655_62299655	0.000445507	Emx1_Emx2	ENSRNOT00000024855|Gjd4|ENSRNOG00000018407|gap junction protein%2C delta 4 [Source:RGD Symbol%3BAcc:628621]
rn6_v1_chr8_-_36438730_36438730	0.000393586	Emx1_Emx2	ENSRNOT00000015366|Fam118b|ENSRNOG00000011543|family with sequence similarity 118%2C member B [Source:RGD Symbol%3BAcc:1307173]
rn6_v1_chr6_-_76608864_76608864	0.000142554	Emx1_Emx2	ENSRNOT00000010824|Ralgapa1|ENSRNOG00000046256|Ral GTPase activating protein catalytic alpha subunit 1 [Source:RGD Symbol%3BAcc:620642]
rn6_v1_chr1_+_84685931_84685931	8.27048e-05	Emx1_Emx2	ENSRNOT00000063839|Zfp780b|ENSRNOG00000029805|zinc finger protein 780B [Source:RGD Symbol%3BAcc:1592570]
