rn6_v1_chr18_-_55916220_55916220	0.377085	Foxa2_Foxa1	ENSRNOT00000025934|Synpo|ENSRNOG00000019181|synaptopodin [Source:RGD Symbol%3BAcc:620668]
rn6_v1_chr8_+_40009691_40009691	0.229505	Foxa2_Foxa1	ENSRNOT00000042679|Vsig2|ENSRNOG00000033490|V-set and immunoglobulin domain containing 2 [Source:RGD Symbol%3BAcc:1561274]
rn6_v1_chr9_-_15274917_15274917	0.223092	Foxa2_Foxa1	ENSRNOT00000019650|Pgc|ENSRNOG00000014492|progastricsin [Source:RGD Symbol%3BAcc:3943]
rn6_v1_chr3_-_158328881_158328881	0.188314	Foxa2_Foxa1	ENSRNOT00000044466|Ptprt|ENSRNOG00000032656|protein tyrosine phosphatase%2C receptor type%2C T [Source:RGD Symbol%3BAcc:1309653]
rn6_v1_chr9_+_27034022_27034022	0.173171	Foxa2_Foxa1	ENSRNOT00000029696|Paqr8|ENSRNOG00000012830|progestin and adipoQ receptor family member 8 [Source:RGD Symbol%3BAcc:1311710]
rn6_v1_chr1_-_267203986_267203986	0.167494	Foxa2_Foxa1	ENSRNOT00000027574|Sh3pxd2a|ENSRNOG00000020353|SH3 and PX domains 2A [Source:RGD Symbol%3BAcc:1311185]
rn6_v1_chr9_+_118849302_118849302	0.16498	Foxa2_Foxa1	ENSRNOT00000087592|Dlgap1|ENSRNOG00000016196|DLG associated protein 1 [Source:RGD Symbol%3BAcc:620223]
rn6_v1_chr9_+_119542328_119542328	0.159509	Foxa2_Foxa1	ENSRNOT00000082005|Lpin2|ENSRNOG00000014876|lipin 2 [Source:RGD Symbol%3BAcc:1304588]
rn6_v1_chr7_+_41475163_41475163	0.151619	Foxa2_Foxa1	ENSRNOT00000037844|Dusp6|ENSRNOG00000023896|dual specificity phosphatase 6 [Source:RGD Symbol%3BAcc:70978]
rn6_v1_chr12_-_36398206_36398246	0.142606	Foxa2_Foxa1	ENSRNOT00000090944|Tmem132b|ENSRNOG00000038406|transmembrane protein 132B [Source:RGD Symbol%3BAcc:1566191]	ENSRNOT00000058492|Tmem132b|ENSRNOG00000038406|transmembrane protein 132B [Source:RGD Symbol%3BAcc:1566191]
rn6_v1_chr10_-_37311625_37311625	0.13366	Foxa2_Foxa1	ENSRNOT00000043343|Jade2|ENSRNOG00000004956|jade family PHD finger 2 [Source:RGD Symbol%3BAcc:1309152]
rn6_v1_chr10_-_103687425_103687425	0.132019	Foxa2_Foxa1	ENSRNOT00000039284|Cd300lf|ENSRNOG00000021424|Cd300 molecule-like family member F [Source:RGD Symbol%3BAcc:1309733]
rn6_v1_chr9_+_47281961_47281961	0.11762	Foxa2_Foxa1	ENSRNOT00000065234|Slc9a4|ENSRNOG00000015306|solute carrier family 9 member A4 [Source:RGD Symbol%3BAcc:3721]
rn6_v1_chr20_+_29655226_29655226	0.115759	Foxa2_Foxa1	ENSRNOT00000089059|Spock2|ENSRNOG00000061544|SPARC/osteonectin%2C cwcv and kazal like domains proteoglycan 2 [Source:RGD Symbol%3BAcc:1308568]
rn6_v1_chr10_+_11393103_11393103	0.105732	Foxa2_Foxa1	ENSRNOT00000076022|Adcy9|ENSRNOG00000049768|adenylate cyclase 9 [Source:RGD Symbol%3BAcc:1304747]
rn6_v1_chr1_-_131460473_131460473	0.104599	Foxa2_Foxa1	ENSRNOT00000084336|Nr2f2|ENSRNOG00000010308|nuclear receptor subfamily 2%2C group F%2C member 2 [Source:RGD Symbol%3BAcc:69305]
rn6_v1_chr1_+_27476375_27476375	0.101848	Foxa2_Foxa1	ENSRNOT00000047224|LOC102551716|ENSRNOG00000029608|sodium/potassium-transporting ATPase subunit beta-1-interacting protein 2-like [Source:RGD Symbol%3BAcc:7740967]	ENSRNOT00000075427|LOC102551716|ENSRNOG00000029608|sodium/potassium-transporting ATPase subunit beta-1-interacting protein 2-like [Source:RGD Symbol%3BAcc:7740967]
rn6_v1_chr11_-_45124423_45124423	0.100458	Foxa2_Foxa1	ENSRNOT00000046383|Filip1l|ENSRNOG00000001645|filamin A interacting protein 1-like [Source:RGD Symbol%3BAcc:1565927]
rn6_v1_chr10_-_88060561_88060561	0.0926534	Foxa2_Foxa1	ENSRNOT00000019133|Krt19|ENSRNOG00000014233|keratin 19 [Source:RGD Symbol%3BAcc:619936]
rn6_v1_chr1_+_261337594_261337594	0.090906	Foxa2_Foxa1	ENSRNOT00000019874|Pi4k2a|ENSRNOG00000014675|phosphatidylinositol 4-kinase type 2 alpha [Source:RGD Symbol%3BAcc:620485]
rn6_v1_chr13_+_43850751_43850751	0.0884002	Foxa2_Foxa1	ENSRNOT00000004995|Mgat5|ENSRNOG00000003614|mannosyl (alpha-1%2C6-)-glycoprotein beta-1%2C6-N-acetyl-glucosaminyltransferase [Source:RGD Symbol%3BAcc:620100]
rn6_v1_chr11_-_11585078_11585078	0.0880134	Foxa2_Foxa1	ENSRNOT00000088878|Robo2|ENSRNOG00000029598|roundabout guidance receptor 2 [Source:RGD Symbol%3BAcc:620167]
rn6_v1_chr3_+_162357356_162357356	0.0863913	Foxa2_Foxa1	ENSRNOT00000030119|Eya2|ENSRNOG00000019203|EYA transcriptional coactivator and phosphatase 2 [Source:RGD Symbol%3BAcc:620096]
rn6_v1_chr7_+_99954492_99954492	0.0843262	Foxa2_Foxa1	ENSRNOT00000005885|Trib1|ENSRNOG00000004100|tribbles pseudokinase 1 [Source:RGD Symbol%3BAcc:621596]
rn6_v1_chr1_-_134870255_134870255	0.078575	Foxa2_Foxa1	ENSRNOT00000055829|Chd2|ENSRNOG00000012716|chromodomain helicase DNA binding protein 2 [Source:RGD Symbol%3BAcc:1310056]
rn6_v1_chr1_+_248228496_248228496	0.0763064	Foxa2_Foxa1	ENSRNOT00000015406|Uhrf2|ENSRNOG00000011308|ubiquitin like with PHD and ring finger domains 2 [Source:RGD Symbol%3BAcc:1309990]
rn6_v1_chr12_-_40822159_40822159	0.0737272	Foxa2_Foxa1	ENSRNOT00000001826|Hectd4|ENSRNOG00000001352|HECT domain E3 ubiquitin protein ligase 4 [Source:RGD Symbol%3BAcc:1309762]
rn6_v1_chr3_-_141411170_141411170	0.0705032	Foxa2_Foxa1	ENSRNOT00000017364|Nkx2-2|ENSRNOG00000012728|NK2 homeobox 2 [Source:RGD Symbol%3BAcc:1308443]
rn6_v1_chr7_+_58814805_58814805	0.0699586	Foxa2_Foxa1	ENSRNOT00000005909|Tspan8|ENSRNOG00000004411|tetraspanin 8 [Source:RGD Symbol%3BAcc:621783]
rn6_v1_chr7_-_138483612_138483612	0.0663575	Foxa2_Foxa1	ENSRNOT00000085620|Slc38a4|ENSRNOG00000006653|solute carrier family 38%2C member 4 [Source:RGD Symbol%3BAcc:621836]
rn6_v1_chr15_+_23792931_23792931	0.0656892	Foxa2_Foxa1	ENSRNOT00000092091|Samd4a|ENSRNOG00000010489|sterile alpha motif domain containing 4A [Source:RGD Symbol%3BAcc:1310361]
rn6_v1_chr6_+_42947334_42947334	0.0620773	Foxa2_Foxa1	ENSRNOT00000041376|RGD1563157|ENSRNOG00000032523|similar to 60S ribosomal protein L35 [Source:RGD Symbol%3BAcc:1563157]
rn6_v1_chrX_+_35599258_35599291	0.0615392	Foxa2_Foxa1	ENSRNOT00000072627|Cdkl5|ENSRNOG00000003742|cyclin-dependent kinase-like 5 [Source:RGD Symbol%3BAcc:2324133]	ENSRNOT00000005061|Cdkl5|ENSRNOG00000003742|cyclin-dependent kinase-like 5 [Source:RGD Symbol%3BAcc:2324133]
rn6_v1_chr11_+_65743892_65743892	0.0609115	Foxa2_Foxa1	ENSRNOT00000085226|AC106292.2|ENSRNOG00000059017|
rn6_v1_chr8_-_115981910_115981910	0.0578508	Foxa2_Foxa1	ENSRNOT00000019867|Dock3|ENSRNOG00000014576|dedicator of cyto-kinesis 3 [Source:RGD Symbol%3BAcc:1306677]
rn6_v1_chr2_-_258997138_258997145	0.0559605	Foxa2_Foxa1	ENSRNOT00000045020|Adgrl2|ENSRNOG00000032660|adhesion G protein-coupled receptor L2 [Source:RGD Symbol%3BAcc:620835]	ENSRNOT00000042256|Adgrl2|ENSRNOG00000032660|adhesion G protein-coupled receptor L2 [Source:RGD Symbol%3BAcc:620835]
rn6_v1_chr1_+_156552328_156552328	0.0545072	Foxa2_Foxa1	ENSRNOT00000055401|Dlg2|ENSRNOG00000022635|discs large MAGUK scaffold protein 2 [Source:RGD Symbol%3BAcc:619895]
rn6_v1_chr6_+_106052212_106052212	0.0527177	Foxa2_Foxa1	ENSRNOT00000010626|Sipa1l1|ENSRNOG00000007646|signal-induced proliferation-associated 1 like 1 [Source:RGD Symbol%3BAcc:708497]
rn6_v1_chr2_+_200572502_200572502	0.0515716	Foxa2_Foxa1	ENSRNOT00000074666|Zfp697|ENSRNOG00000048181|zinc finger protein 697 [Source:RGD Symbol%3BAcc:1308711]
rn6_v1_chr1_+_81779380_81779482	0.0500903	Foxa2_Foxa1	ENSRNOT00000065865|Arhgef1|ENSRNOG00000020130|Rho guanine nucleotide exchange factor 1 [Source:RGD Symbol%3BAcc:620951]	ENSRNOT00000080143|Arhgef1|ENSRNOG00000020130|Rho guanine nucleotide exchange factor 1 [Source:RGD Symbol%3BAcc:620951]	ENSRNOT00000089592|Arhgef1|ENSRNOG00000020130|Rho guanine nucleotide exchange factor 1 [Source:RGD Symbol%3BAcc:620951]	ENSRNOT00000080840|Arhgef1|ENSRNOG00000020130|Rho guanine nucleotide exchange factor 1 [Source:RGD Symbol%3BAcc:620951]
rn6_v1_chr13_-_90710148_90710287	0.0488617	Foxa2_Foxa1	ENSRNOT00000010113|Kcnj9|ENSRNOG00000007645|potassium voltage-gated channel subfamily J member 9 [Source:RGD Symbol%3BAcc:621440]	ENSRNOT00000080638|Kcnj9|ENSRNOG00000007645|potassium voltage-gated channel subfamily J member 9 [Source:RGD Symbol%3BAcc:621440]
rn6_v1_chr2_+_200603426_200603426	0.0464964	Foxa2_Foxa1	ENSRNOT00000072189|LOC102550892|ENSRNOG00000049090|zinc finger protein 697-like [Source:RGD Symbol%3BAcc:7595982]
rn6_v1_chr10_+_105393072_105393072	0.0460544	Foxa2_Foxa1	ENSRNOT00000013359|Ubald2|ENSRNOG00000010029|UBA-like domain containing 2 [Source:RGD Symbol%3BAcc:1311298]
rn6_v1_chr4_-_15505362_15505362	0.046035	Foxa2_Foxa1	ENSRNOT00000009763|Hgf|ENSRNOG00000007027|hepatocyte growth factor [Source:RGD Symbol%3BAcc:2794]
rn6_v1_chr10_+_58860940_58860940	0.0458657	Foxa2_Foxa1	ENSRNOT00000056551|XAF1|ENSRNOG00000037371|XIAP associated factor-1 [Source:RGD Symbol%3BAcc:1585988]	ENSRNOT00000074523|XAF1|ENSRNOG00000037371|XIAP associated factor-1 [Source:RGD Symbol%3BAcc:1585988]
rn6_v1_chr7_-_97605113_97605113	0.0454189	Foxa2_Foxa1	ENSRNOT00000089734|AABR07058000.1|ENSRNOG00000054951|
rn6_v1_chr5_+_165415136_165415278	0.044646	Foxa2_Foxa1	ENSRNOT00000016317|Masp2|ENSRNOG00000011258|mannan-binding lectin serine peptidase 2 [Source:RGD Symbol%3BAcc:620214]	ENSRNOT00000079407|Masp2|ENSRNOG00000011258|mannan-binding lectin serine peptidase 2 [Source:RGD Symbol%3BAcc:620214]
rn6_v1_chr7_-_122329443_122329443	0.0446207	Foxa2_Foxa1	ENSRNOT00000032232|Mkl1|ENSRNOG00000018803|megakaryoblastic leukemia (translocation) 1 [Source:RGD Symbol%3BAcc:1304873]
rn6_v1_chr8_-_104593625_104593625	0.0436149	Foxa2_Foxa1	ENSRNOT00000016625|Zbtb38|ENSRNOG00000012386|zinc finger and BTB domain containing 38 [Source:RGD Symbol%3BAcc:1310136]
rn6_v1_chr7_-_28040510_28040510	0.0436042	Foxa2_Foxa1	ENSRNOT00000005674|Ascl1|ENSRNOG00000004294|achaete-scute family bHLH transcription factor 1 [Source:RGD Symbol%3BAcc:71010]
rn6_v1_chr1_-_90520344_90520344	0.0435565	Foxa2_Foxa1	ENSRNOT00000078598|Kctd15|ENSRNOG00000021137|potassium channel tetramerization domain containing 15 [Source:RGD Symbol%3BAcc:1583737]
rn6_v1_chr10_-_51669297_51669297	0.0430619	Foxa2_Foxa1	ENSRNOT00000071595|Arhgap44|ENSRNOG00000003603|Rho GTPase activating protein 44 [Source:RGD Symbol%3BAcc:1305664]
rn6_v1_chr16_-_81980027_81980027	0.0429391	Foxa2_Foxa1	ENSRNOT00000043170|Mcf2l|ENSRNOG00000028426|MCF.2 cell line derived transforming sequence-like [Source:RGD Symbol%3BAcc:619782]
rn6_v1_chr9_+_67234303_67234303	0.0428152	Foxa2_Foxa1	ENSRNOT00000050179|Abi2|ENSRNOG00000017707|abl-interactor 2 [Source:RGD Symbol%3BAcc:628771]
rn6_v1_chr10_-_27179254_27179254	0.0424928	Foxa2_Foxa1	ENSRNOT00000004619|Gabrg2|ENSRNOG00000003241|gamma-aminobutyric acid type A receptor gamma 2 subunit [Source:RGD Symbol%3BAcc:61966]
rn6_v1_chr10_-_15928169_15928169	0.0416648	Foxa2_Foxa1	ENSRNOT00000028069|Nsg2|ENSRNOG00000020644|neuron specific gene family member 2 [Source:RGD Symbol%3BAcc:1563944]
rn6_v1_chr3_-_162059524_162059524	0.0416464	Foxa2_Foxa1	ENSRNOT00000033873|Zfp334|ENSRNOG00000019099|zinc finger protein 334 [Source:RGD Symbol%3BAcc:1592574]
rn6_v1_chr14_+_42015347_42015347	0.0416366	Foxa2_Foxa1	ENSRNOT00000044017|Atp8a1|ENSRNOG00000034200|ATPase phospholipid transporting 8A1 [Source:RGD Symbol%3BAcc:1309619]
rn6_v1_chr10_+_77762900_77762900	0.041105	Foxa2_Foxa1	ENSRNOT00000003308|Mmd|ENSRNOG00000002436|monocyte to macrophage differentiation-associated [Source:RGD Symbol%3BAcc:1592079]
rn6_v1_chr2_+_54897424_54897424	0.0391177	Foxa2_Foxa1	ENSRNOT00000017665|Ttc33|ENSRNOG00000013217|tetratricopeptide repeat domain 33 [Source:RGD Symbol%3BAcc:1564042]
rn6_v1_chr5_+_48290061_48290061	0.039039	Foxa2_Foxa1	ENSRNOT00000076508|Ube2j1|ENSRNOG00000007434|ubiquitin-conjugating enzyme E2%2C J1 [Source:RGD Symbol%3BAcc:1305067]
rn6_v1_chr13_-_94859390_94859436	0.038953	Foxa2_Foxa1	ENSRNOT00000005467|AABR07021840.1|ENSRNOG00000004127|	ENSRNOT00000079763|AABR07021840.1|ENSRNOG00000004127|
rn6_v1_chr16_+_50152008_50152008	0.0377963	Foxa2_Foxa1	ENSRNOT00000019237|Klkb1|ENSRNOG00000014118|kallikrein B1 [Source:RGD Symbol%3BAcc:67382]
rn6_v1_chr3_+_63379031_63379031	0.0374662	Foxa2_Foxa1	ENSRNOT00000068199|Osbpl6|ENSRNOG00000010812|oxysterol binding protein-like 6 [Source:RGD Symbol%3BAcc:1308887]
rn6_v1_chr4_-_68819872_68819928	0.0371082	Foxa2_Foxa1	ENSRNOT00000033265|Clec5a|ENSRNOG00000026306|C-type lectin domain family 5%2C member A [Source:RGD Symbol%3BAcc:1584755]	ENSRNOT00000081884|Clec5a|ENSRNOG00000026306|C-type lectin domain family 5%2C member A [Source:RGD Symbol%3BAcc:1584755]
rn6_v1_chr9_+_18564927_18564927	0.0361538	Foxa2_Foxa1	ENSRNOT00000061014|Runx2|ENSRNOG00000020193|runt-related transcription factor 2 [Source:RGD Symbol%3BAcc:2282]
rn6_v1_chr2_-_250232295_250232295	0.0359419	Foxa2_Foxa1	ENSRNOT00000082132|Lmo4|ENSRNOG00000009205|LIM domain only 4 [Source:RGD Symbol%3BAcc:1305670]
rn6_v1_chr10_+_81913689_81913689	0.0357808	Foxa2_Foxa1	ENSRNOT00000003780|Tob1|ENSRNOG00000002828|transducer of ErbB-2.1 [Source:RGD Symbol%3BAcc:621126]
rn6_v1_chr13_+_83073866_83073866	0.0356145	Foxa2_Foxa1	ENSRNOT00000075996|Dpt|ENSRNOG00000002947|dermatopontin [Source:RGD Symbol%3BAcc:1307176]
rn6_v1_chr6_-_50786967_50786967	0.0353158	Foxa2_Foxa1	ENSRNOT00000009566|Cbll1|ENSRNOG00000007253|Cbl proto-oncogene like 1 [Source:RGD Symbol%3BAcc:1310703]
rn6_v1_chr17_+_81922329_81922329	0.0350683	Foxa2_Foxa1	ENSRNOT00000031542|Cacnb2|ENSRNOG00000018378|calcium voltage-gated channel auxiliary subunit beta 2 [Source:RGD Symbol%3BAcc:67385]
rn6_v1_chr6_+_93462852_93462852	0.0349269	Foxa2_Foxa1	ENSRNOT00000089473|Arid4a|ENSRNOG00000026239|AT-rich interaction domain 4A [Source:RGD Symbol%3BAcc:1307442]
rn6_v1_chr17_-_1093873_1093873	0.0340011	Foxa2_Foxa1	ENSRNOT00000086130|Ptch1|ENSRNOG00000019354|patched 1 [Source:RGD Symbol%3BAcc:621425]
rn6_v1_chr3_-_60795951_60795951	0.0335762	Foxa2_Foxa1	ENSRNOT00000002174|Atf2|ENSRNOG00000001597|activating transcription factor 2 [Source:RGD Symbol%3BAcc:621862]
rn6_v1_chr5_+_59178846_59178846	0.0335048	Foxa2_Foxa1	ENSRNOT00000021227|Tmem8b|ENSRNOG00000015664|transmembrane protein 8B [Source:RGD Symbol%3BAcc:1310012]
rn6_v1_chr5_+_116420690_116420690	0.0333077	Foxa2_Foxa1	ENSRNOT00000087089|Nfia|ENSRNOG00000006966|nuclear factor I/A [Source:RGD Symbol%3BAcc:3170]
rn6_v1_chr10_+_80953006_80953006	0.0323786	Foxa2_Foxa1	ENSRNOT00000035567|Hnrnpa3|ENSRNOG00000027006|heterogeneous nuclear ribonucleoprotein A3 [Source:RGD Symbol%3BAcc:727807]
rn6_v1_chr9_+_60039297_60039297	0.0319501	Foxa2_Foxa1	ENSRNOT00000016262|Slc39a10|ENSRNOG00000011677|solute carrier family 39 member 10 [Source:RGD Symbol%3BAcc:1307321]
rn6_v1_chr4_-_81241152_81241282	0.0315939	Foxa2_Foxa1	ENSRNOT00000015325|Hnrnpa2b1|ENSRNOG00000011175|heterogeneous nuclear ribonucleoprotein A2/B1 [Source:RGD Symbol%3BAcc:1310403]	ENSRNOT00000015152|Hnrnpa2b1|ENSRNOG00000011175|heterogeneous nuclear ribonucleoprotein A2/B1 [Source:RGD Symbol%3BAcc:1310403]
rn6_v1_chr20_+_5646097_5646097	0.031589	Foxa2_Foxa1	ENSRNOT00000090925|Itpr3|ENSRNOG00000052795|inositol 1%2C4%2C5-trisphosphate receptor%2C type 3 [Source:RGD Symbol%3BAcc:2934]
rn6_v1_chr1_-_236729412_236729412	0.0314593	Foxa2_Foxa1	ENSRNOT00000054794|Prune2|ENSRNOG00000015088|prune homolog 2 [Source:RGD Symbol%3BAcc:1311350]
rn6_v1_chr4_-_55011415_55011415	0.0313461	Foxa2_Foxa1	ENSRNOT00000056996|Grm8|ENSRNOG00000021468|glutamate metabotropic receptor 8 [Source:RGD Symbol%3BAcc:619858]
rn6_v1_chr9_-_46475040_46475040	0.0313226	Foxa2_Foxa1	ENSRNOT00000078196|Rfx8|ENSRNOG00000058243|RFX family member 8%2C lacking RFX DNA binding domain [Source:RGD Symbol%3BAcc:1560724]
rn6_v1_chr10_+_17486579_17486579	0.0301778	Foxa2_Foxa1	ENSRNOT00000080404|Stk10|ENSRNOG00000004217|serine/threonine kinase 10 [Source:RGD Symbol%3BAcc:3779]
rn6_v1_chr2_+_44289393_44289393	0.0295603	Foxa2_Foxa1	ENSRNOT00000018877|Il6st|ENSRNOG00000013963|interleukin 6 signal transducer [Source:RGD Symbol%3BAcc:2903]
rn6_v1_chr15_+_55126953_55126953	0.0288916	Foxa2_Foxa1	ENSRNOT00000021430|Lpar6|ENSRNOG00000015577|lysophosphatidic acid receptor 6 [Source:RGD Symbol%3BAcc:1595950]
rn6_v1_chr3_-_82856171_82856171	0.0284438	Foxa2_Foxa1	ENSRNOT00000088555|RGD1564664|ENSRNOG00000055564|similar to LOC387763 protein [Source:RGD Symbol%3BAcc:1564664]
rn6_v1_chr9_-_63641400_63641400	0.0284133	Foxa2_Foxa1	ENSRNOT00000087684|Satb2|ENSRNOG00000010188|SATB homeobox 2 [Source:RGD Symbol%3BAcc:1562369]
rn6_v1_chr15_+_34520142_34520142	0.0282125	Foxa2_Foxa1	ENSRNOT00000074659|Nynrin|ENSRNOG00000048431|NYN domain and retroviral integrase containing [Source:RGD Symbol%3BAcc:6486974]
rn6_v1_chr2_+_198359754_198359754	0.0281636	Foxa2_Foxa1	ENSRNOT00000048582|Hist2h2ab|ENSRNOG00000048317|histone cluster 2 H2A family member b [Source:RGD Symbol%3BAcc:1584064]
rn6_v1_chr2_-_192671059_192671059	0.0280648	Foxa2_Foxa1	ENSRNOT00000012174|Sprr1a|ENSRNOG00000024028|small proline-rich protein 1A [Source:RGD Symbol%3BAcc:1593163]
rn6_v1_chr2_+_104744461_104744476	0.0280484	Foxa2_Foxa1	ENSRNOT00000016083|Cp|ENSRNOG00000011913|ceruloplasmin [Source:RGD Symbol%3BAcc:2387]	ENSRNOT00000082627|Cp|ENSRNOG00000011913|ceruloplasmin [Source:RGD Symbol%3BAcc:2387]
rn6_v1_chr9_+_71915421_71915421	0.0269553	Foxa2_Foxa1	ENSRNOT00000020447|Pikfyve|ENSRNOG00000015158|phosphoinositide kinase%2C FYVE-type zinc finger containing [Source:RGD Symbol%3BAcc:1592067]
rn6_v1_chr7_+_28414350_28414350	0.0268308	Foxa2_Foxa1	ENSRNOT00000085680|Igf1|ENSRNOG00000004517|insulin-like growth factor 1 [Source:RGD Symbol%3BAcc:2868]
rn6_v1_chr8_+_123126667_123126667	0.0261904	Foxa2_Foxa1	ENSRNOT00000015643|Osbpl10|ENSRNOG00000011435|oxysterol binding protein-like 10 [Source:RGD Symbol%3BAcc:1561652]
rn6_v1_chr16_-_19583386_19583386	0.0259131	Foxa2_Foxa1	ENSRNOT00000090131|Zfp617|ENSRNOG00000060701|zinc finger protein 617 [Source:MGI Symbol%3BAcc:MGI:2684459]
rn6_v1_chr17_-_84830185_84830185	0.025704	Foxa2_Foxa1	ENSRNOT00000040697|Skida1|ENSRNOG00000033330|SKI/DACH domain containing 1 [Source:RGD Symbol%3BAcc:1588196]
rn6_v1_chr14_-_44767120_44767120	0.0256151	Foxa2_Foxa1	ENSRNOT00000003991|Wdr19|ENSRNOG00000002932|WD repeat domain 19 [Source:RGD Symbol%3BAcc:1306997]
rn6_v1_chr7_+_54247460_54247460	0.0256079	Foxa2_Foxa1	ENSRNOT00000005361|Phlda1|ENSRNOG00000004019|pleckstrin homology-like domain%2C family A%2C member 1 [Source:RGD Symbol%3BAcc:3836]
rn6_v1_chr6_+_27887797_27887797	0.0255247	Foxa2_Foxa1	ENSRNOT00000015827|Asxl2|ENSRNOG00000011908|additional sex combs like 2%2C transcriptional regulator [Source:RGD Symbol%3BAcc:1304710]
rn6_v1_chr15_+_33074441_33074441	0.0252713	Foxa2_Foxa1	ENSRNOT00000075610|Mmp14|ENSRNOG00000010947|matrix metallopeptidase 14 [Source:RGD Symbol%3BAcc:620198]
rn6_v1_chr6_-_3355339_3355339	0.0251187	Foxa2_Foxa1	ENSRNOT00000084602|Map4k3|ENSRNOG00000007172|mitogen-activated protein kinase kinase kinase kinase 3 [Source:RGD Symbol%3BAcc:621280]
rn6_v1_chr3_+_131351587_131351587	0.02477	Foxa2_Foxa1	ENSRNOT00000010835|Btbd3|ENSRNOG00000008088|BTB domain containing 3 [Source:RGD Symbol%3BAcc:1311623]
rn6_v1_chr1_-_90520012_90520012	0.0245356	Foxa2_Foxa1	ENSRNOT00000028698|Kctd15|ENSRNOG00000021137|potassium channel tetramerization domain containing 15 [Source:RGD Symbol%3BAcc:1583737]
rn6_v1_chr4_+_168599331_168599331	0.024245	Foxa2_Foxa1	ENSRNOT00000086719|Crebl2|ENSRNOG00000007115|cAMP responsive element binding protein-like 2 [Source:RGD Symbol%3BAcc:1309502]
rn6_v1_chr10_-_95212111_95212111	0.0242427	Foxa2_Foxa1	ENSRNOT00000020795|Kpna2|ENSRNOG00000015329|karyopherin subunit alpha 2 [Source:RGD Symbol%3BAcc:621419]
rn6_v1_chr10_-_57064600_57064600	0.0242262	Foxa2_Foxa1	ENSRNOT00000032926|Cxcl16|ENSRNOG00000026647|C-X-C motif chemokine ligand 16 [Source:RGD Symbol%3BAcc:1562928]
rn6_v1_chr5_+_25168295_25168295	0.0240623	Foxa2_Foxa1	ENSRNOT00000020245|Fsbp|ENSRNOG00000015004|fibrinogen silencer binding protein [Source:RGD Symbol%3BAcc:7611658]
rn6_v1_chr6_-_104631355_104631355	0.0240583	Foxa2_Foxa1	ENSRNOT00000007825|Slc10a1|ENSRNOG00000005794|solute carrier family 10 member 1 [Source:RGD Symbol%3BAcc:3681]
rn6_v1_chr15_-_77736892_77736892	0.0239431	Foxa2_Foxa1	ENSRNOT00000057924|Pcdh9|ENSRNOG00000038068|protocadherin 9 [Source:RGD Symbol%3BAcc:1306348]
rn6_v1_chr13_+_97838361_97838361	0.0237117	Foxa2_Foxa1	ENSRNOT00000003641|Cnst|ENSRNOG00000002710|consortin%2C connexin sorting protein [Source:RGD Symbol%3BAcc:1564833]
rn6_v1_chr2_+_234375315_234375315	0.0233154	Foxa2_Foxa1	ENSRNOT00000071270|LOC102549542|ENSRNOG00000048949|elongation of very long chain fatty acids protein 6-like [Source:RGD Symbol%3BAcc:7527008]
rn6_v1_chr4_-_84131030_84131030	0.0232211	Foxa2_Foxa1	ENSRNOT00000012196|Cpvl|ENSRNOG00000009172|carboxypeptidase%2C vitellogenic-like [Source:RGD Symbol%3BAcc:1563609]
rn6_v1_chrX_+_62754634_62754634	0.0230076	Foxa2_Foxa1	ENSRNOT00000016669|Pcyt1b|ENSRNOG00000012358|phosphate cytidylyltransferase 1%2C choline%2C beta [Source:RGD Symbol%3BAcc:708434]
rn6_v1_chr1_+_72545596_72545596	0.0226968	Foxa2_Foxa1	ENSRNOT00000022698|Shisa7|ENSRNOG00000016877|shisa family member 7 [Source:RGD Symbol%3BAcc:1583944]
rn6_v1_chr9_-_17206994_17206994	0.0220054	Foxa2_Foxa1	ENSRNOT00000026195|Gtpbp2|ENSRNOG00000019332|GTP binding protein 2 [Source:RGD Symbol%3BAcc:1306367]
rn6_v1_chr3_-_150855228_150855228	0.0219896	Foxa2_Foxa1	ENSRNOT00000089935|Pigu|ENSRNOG00000025181|phosphatidylinositol glycan anchor biosynthesis%2C class U [Source:RGD Symbol%3BAcc:727825]
rn6_v1_chr9_+_111220858_111220858	0.021773	Foxa2_Foxa1	ENSRNOT00000076669|Ppip5k2|ENSRNOG00000011613|diphosphoinositol pentakisphosphate kinase 2 [Source:RGD Symbol%3BAcc:1590765]
rn6_v1_chr2_+_236233239_236233239	0.0213098	Foxa2_Foxa1	ENSRNOT00000013694|Lef1|ENSRNOG00000010121|lymphoid enhancer binding factor 1 [Source:RGD Symbol%3BAcc:620241]
rn6_v1_chr1_+_82452469_82452469	0.0208327	Foxa2_Foxa1	ENSRNOT00000028026|Exosc5|ENSRNOG00000020635|exosome component 5 [Source:RGD Symbol%3BAcc:1307861]
rn6_v1_chr5_-_88629491_88629491	0.0207646	Foxa2_Foxa1	ENSRNOT00000058906|Tle1|ENSRNOG00000005882|transducin like enhancer of split 1 [Source:RGD Symbol%3BAcc:1309237]
rn6_v1_chr13_-_79744939_79744939	0.020528	Foxa2_Foxa1	ENSRNOT00000076706|Suco|ENSRNOG00000026542|SUN domain containing ossification factor [Source:RGD Symbol%3BAcc:735185]
rn6_v1_chr13_-_84619023_84619042	0.0203916	Foxa2_Foxa1	ENSRNOT00000089827|Pogk|ENSRNOG00000032058|pogo transposable element with KRAB domain [Source:RGD Symbol%3BAcc:1308951]	ENSRNOT00000045056|Pogk|ENSRNOG00000032058|pogo transposable element with KRAB domain [Source:RGD Symbol%3BAcc:1308951]
rn6_v1_chr6_+_58468155_58468155	0.0201606	Foxa2_Foxa1	ENSRNOT00000091263|Etv1|ENSRNOG00000006867|ets variant 1 [Source:RGD Symbol%3BAcc:1312007]
rn6_v1_chr10_+_18996523_18996523	0.0198274	Foxa2_Foxa1	ENSRNOT00000046135|Lcp2|ENSRNOG00000005620|lymphocyte cytosolic protein 2 [Source:RGD Symbol%3BAcc:619743]
rn6_v1_chr5_+_157165341_157165341	0.019509	Foxa2_Foxa1	ENSRNOT00000087072|Pla2g2c|ENSRNOG00000016647|phospholipase A2%2C group IIC [Source:RGD Symbol%3BAcc:3340]
rn6_v1_chr13_-_74331214_74331214	0.0194934	Foxa2_Foxa1	ENSRNOT00000006018|Fam20b|ENSRNOG00000004337|FAM20B%2C glycosaminoglycan xylosylkinase [Source:RGD Symbol%3BAcc:1311162]
rn6_v1_chr3_+_120726906_120726906	0.0192112	Foxa2_Foxa1	ENSRNOT00000051069|Bcl2l11|ENSRNOG00000016551|BCL2 like 11 [Source:RGD Symbol%3BAcc:628774]
rn6_v1_chr9_+_111028575_111028575	0.0191254	Foxa2_Foxa1	ENSRNOT00000043451|Pam|ENSRNOG00000033280|peptidylglycine alpha-amidating monooxygenase [Source:RGD Symbol%3BAcc:3252]
rn6_v1_chrX_+_78042859_78042859	0.018793	Foxa2_Foxa1	ENSRNOT00000003286|Lpar4|ENSRNOG00000002428|lysophosphatidic acid receptor 4 [Source:RGD Symbol%3BAcc:1563686]
rn6_v1_chr5_+_113725717_113725717	0.0183018	Foxa2_Foxa1	ENSRNOT00000032248|Tek|ENSRNOG00000008587|TEK receptor tyrosine kinase [Source:RGD Symbol%3BAcc:620980]
rn6_v1_chr7_+_120176530_120176530	0.0181605	Foxa2_Foxa1	ENSRNOT00000087548|Triobp|ENSRNOG00000059015|TRIO and F-actin binding protein [Source:RGD Symbol%3BAcc:1308485]
rn6_v1_chr2_-_183128932_183128932	0.0174812	Foxa2_Foxa1	ENSRNOT00000031179|Mnd1|ENSRNOG00000024733|meiotic nuclear divisions 1 [Source:RGD Symbol%3BAcc:1309007]
rn6_v1_chr2_+_69415057_69415057	0.0168928	Foxa2_Foxa1	ENSRNOT00000013152|Cdh10|ENSRNOG00000009771|cadherin 10 [Source:RGD Symbol%3BAcc:619741]
rn6_v1_chr1_+_220325352_220325352	0.0167171	Foxa2_Foxa1	ENSRNOT00000027258|LOC108348098|ENSRNOG00000020117|breast cancer metastasis-suppressor 1 homolog [Source:RGD Symbol%3BAcc:11501278]
rn6_v1_chr10_-_27179900_27179900	0.0166812	Foxa2_Foxa1	ENSRNOT00000082445|Gabrg2|ENSRNOG00000003241|gamma-aminobutyric acid type A receptor gamma 2 subunit [Source:RGD Symbol%3BAcc:61966]
rn6_v1_chr2_-_54823917_54824033	0.0164706	Foxa2_Foxa1	ENSRNOT00000039057|Card6|ENSRNOG00000001271|caspase recruitment domain family%2C member 6 [Source:RGD Symbol%3BAcc:1305805]	ENSRNOT00000079333|Card6|ENSRNOG00000001271|caspase recruitment domain family%2C member 6 [Source:RGD Symbol%3BAcc:1305805]
rn6_v1_chr15_+_24942218_24942218	0.0157631	Foxa2_Foxa1	ENSRNOT00000016629|Peli2|ENSRNOG00000012363|pellino E3 ubiquitin protein ligase family member 2 [Source:RGD Symbol%3BAcc:1565884]
rn6_v1_chr13_+_47602692_47602692	0.0156758	Foxa2_Foxa1	ENSRNOT00000038822|Fcmr|ENSRNOG00000004441|Fc fragment of IgM receptor [Source:RGD Symbol%3BAcc:1359282]
rn6_v1_chr6_+_22696397_22696397	0.0146389	Foxa2_Foxa1	ENSRNOT00000011630|Alk|ENSRNOG00000008683|anaplastic lymphoma receptor tyrosine kinase [Source:RGD Symbol%3BAcc:628622]
rn6_v1_chr11_-_70498391_70498437	0.0143399	Foxa2_Foxa1	ENSRNOT00000040167|Slc12a8|ENSRNOG00000001792|solute carrier family 12%2C member 8 [Source:RGD Symbol%3BAcc:628730]	ENSRNOT00000086495|Slc12a8|ENSRNOG00000001792|solute carrier family 12%2C member 8 [Source:RGD Symbol%3BAcc:628730]
rn6_v1_chr8_-_130127392_130127392	0.0143117	Foxa2_Foxa1	ENSRNOT00000026159|Cck|ENSRNOG00000019321|cholecystokinin [Source:RGD Symbol%3BAcc:2288]
rn6_v1_chr8_+_50525091_50525091	0.0142672	Foxa2_Foxa1	ENSRNOT00000074357|Apoa1|ENSRNOG00000045679|apolipoprotein A1 [Source:RGD Symbol%3BAcc:2130]
rn6_v1_chr7_+_91833297_91833297	0.0142044	Foxa2_Foxa1	ENSRNOT00000079792|Slc30a8|ENSRNOG00000004747|solute carrier family 30 member 8 [Source:RGD Symbol%3BAcc:1308282]
rn6_v1_chr18_-_69671199_69671199	0.0139415	Foxa2_Foxa1	ENSRNOT00000082484|Smad4|ENSRNOG00000051965|SMAD family member 4 [Source:RGD Symbol%3BAcc:3033]
rn6_v1_chr1_-_100845392_100845392	0.0139381	Foxa2_Foxa1	ENSRNOT00000027436|Tbc1d17|ENSRNOG00000020191|TBC1 domain family%2C member 17 [Source:RGD Symbol%3BAcc:1309686]
rn6_v1_chrX_-_15504165_15504165	0.0135552	Foxa2_Foxa1	ENSRNOT00000006233|Otud5|ENSRNOG00000008764|OTU deubiquitinase 5 [Source:RGD Symbol%3BAcc:1563027]
rn6_v1_chr18_+_61258911_61258911	0.0133049	Foxa2_Foxa1	ENSRNOT00000082403|Zfp532|ENSRNOG00000017116|zinc finger protein 532 [Source:RGD Symbol%3BAcc:1311719]
rn6_v1_chr10_-_13536899_13536899	0.0129675	Foxa2_Foxa1	ENSRNOT00000008537|Amdhd2|ENSRNOG00000006460|amidohydrolase domain containing 2 [Source:RGD Symbol%3BAcc:1304601]
rn6_v1_chr7_+_80750725_80750725	0.0129161	Foxa2_Foxa1	ENSRNOT00000079962|Oxr1|ENSRNOG00000056487|oxidation resistance 1 [Source:RGD Symbol%3BAcc:621857]
rn6_v1_chr2_-_198706428_198706428	0.0128399	Foxa2_Foxa1	ENSRNOT00000085006|Polr3gl|ENSRNOG00000021209|RNA polymerase III subunit G like [Source:RGD Symbol%3BAcc:1582857]
rn6_v1_chr10_+_98706960_98706960	0.0126021	Foxa2_Foxa1	ENSRNOT00000006217|Map2k6|ENSRNOG00000004437|mitogen-activated protein kinase kinase 6 [Source:RGD Symbol%3BAcc:620666]
rn6_v1_chr6_-_95890325_95890325	0.0125684	Foxa2_Foxa1	ENSRNOT00000050217|LOC690335|ENSRNOG00000032771|similar to 60S ribosomal protein L23a [Source:RGD Symbol%3BAcc:1597353]
rn6_v1_chr6_+_137243185_137243185	0.0125219	Foxa2_Foxa1	ENSRNOT00000030879|Zbtb42|ENSRNOG00000037562|zinc finger and BTB domain containing 42 [Source:RGD Symbol%3BAcc:1582758]
rn6_v1_chr20_-_27308069_27308069	0.0124123	Foxa2_Foxa1	ENSRNOT00000056047|Slc25a16|ENSRNOG00000000387|solute carrier family 25 member 16 [Source:RGD Symbol%3BAcc:1311311]
rn6_v1_chr20_-_31598118_31598118	0.0123449	Foxa2_Foxa1	ENSRNOT00000046537|Col13a1|ENSRNOG00000000552|collagen type XIII alpha 1 chain [Source:RGD Symbol%3BAcc:1595704]
rn6_v1_chr15_-_18675431_18675431	0.0122192	Foxa2_Foxa1	ENSRNOT00000080794|Abhd6|ENSRNOG00000008167|abhydrolase domain containing 6 [Source:RGD Symbol%3BAcc:1359323]
rn6_v1_chr14_+_17228856_17228856	0.0121416	Foxa2_Foxa1	ENSRNOT00000003082|Cxcl9|ENSRNOG00000022242|C-X-C motif chemokine ligand 9 [Source:RGD Symbol%3BAcc:628798]
rn6_v1_chr17_-_27969433_27969433	0.0120875	Foxa2_Foxa1	ENSRNOT00000073967|Nrn1|ENSRNOG00000050767|neuritin 1 [Source:RGD Symbol%3BAcc:621586]
rn6_v1_chr10_+_57040267_57040267	0.0120765	Foxa2_Foxa1	ENSRNOT00000026207|Arrb2|ENSRNOG00000019308|arrestin%2C beta 2 [Source:RGD Symbol%3BAcc:2157]
rn6_v1_chr11_-_782954_782954	0.0117615	Foxa2_Foxa1	ENSRNOT00000040065|Epha3|ENSRNOG00000030285|Eph receptor A3 [Source:RGD Symbol%3BAcc:68389]
rn6_v1_chr9_-_111220651_111220651	0.0114316	Foxa2_Foxa1	ENSRNOT00000016028|Gin1|ENSRNOG00000011962|gypsy retrotransposon integrase 1 [Source:RGD Symbol%3BAcc:1307449]
rn6_v1_chr8_+_85417838_85417838	0.0113751	Foxa2_Foxa1	ENSRNOT00000012257|Ick|ENSRNOG00000008691|intestinal cell kinase [Source:RGD Symbol%3BAcc:71050]
rn6_v1_chr2_+_34546988_34546988	0.0112671	Foxa2_Foxa1	ENSRNOT00000072577|Adamts6|ENSRNOG00000012655|ADAM metallopeptidase with thrombospondin type 1 motif%2C 6 [Source:RGD Symbol%3BAcc:1307678]
rn6_v1_chr9_-_38196273_38196273	0.0112669	Foxa2_Foxa1	ENSRNOT00000044452|Dst|ENSRNOG00000012207|dystonin [Source:RGD Symbol%3BAcc:1306566]
rn6_v1_chr8_+_58120179_58120259	0.0111521	Foxa2_Foxa1	ENSRNOT00000049076|Npat|ENSRNOG00000024934|nuclear protein%2C co-activator of histone transcription [Source:RGD Symbol%3BAcc:1311947]	ENSRNOT00000090114|Npat|ENSRNOG00000024934|nuclear protein%2C co-activator of histone transcription [Source:RGD Symbol%3BAcc:1311947]
rn6_v1_chrX_-_116638508_116638508	0.010773	Foxa2_Foxa1	ENSRNOT00000030400|Lhfpl1|ENSRNOG00000027601|lipoma HMGIC fusion partner-like 1 [Source:RGD Symbol%3BAcc:727927]
rn6_v1_chr5_-_137238354_137238354	0.0105467	Foxa2_Foxa1	ENSRNOT00000039235|Szt2|ENSRNOG00000028659|seizure threshold 2 homolog (mouse) [Source:RGD Symbol%3BAcc:1308616]
rn6_v1_chr4_-_40136061_40136061	0.0104482	Foxa2_Foxa1	ENSRNOT00000009752|Bmt2|ENSRNOG00000007224|base methyltransferase of 25S rRNA 2 homolog [Source:RGD Symbol%3BAcc:1588441]
rn6_v1_chr13_-_51201331_51201364	0.0103851	Foxa2_Foxa1	ENSRNOT00000005272|Tmem183a|ENSRNOG00000003594|transmembrane protein 183A [Source:RGD Symbol%3BAcc:1309892]	ENSRNOT00000078990|Tmem183a|ENSRNOG00000003594|transmembrane protein 183A [Source:RGD Symbol%3BAcc:1309892]
rn6_v1_chr20_-_31597830_31597830	0.0103717	Foxa2_Foxa1	ENSRNOT00000085877|Col13a1|ENSRNOG00000000552|collagen type XIII alpha 1 chain [Source:RGD Symbol%3BAcc:1595704]
rn6_v1_chr9_+_88493593_88493593	0.0103218	Foxa2_Foxa1	ENSRNOT00000020712|LOC102556337|ENSRNOG00000048016|mitochondrial fission factor-like [Source:RGD Symbol%3BAcc:7706142]
rn6_v1_chr3_-_150064438_150064438	0.0102822	Foxa2_Foxa1	ENSRNOT00000086933|E2f1|ENSRNOG00000016708|E2F transcription factor 1 [Source:RGD Symbol%3BAcc:728892]
rn6_v1_chr8_+_57886168_57886168	0.0101574	Foxa2_Foxa1	ENSRNOT00000039336|Exph5|ENSRNOG00000025115|exophilin 5 [Source:RGD Symbol%3BAcc:1560308]
rn6_v1_chr17_-_55346279_55346279	0.00990663	Foxa2_Foxa1	ENSRNOT00000025037|Svil|ENSRNOG00000018110|supervillin [Source:RGD Symbol%3BAcc:1306354]
rn6_v1_chr1_-_246110218_246110218	0.00977107	Foxa2_Foxa1	ENSRNOT00000077544|Rfx3|ENSRNOG00000014486|regulatory factor X3 [Source:RGD Symbol%3BAcc:1307779]
rn6_v1_chr10_+_54156649_54156649	0.00969962	Foxa2_Foxa1	ENSRNOT00000074718|Gas7|ENSRNOG00000049361|growth arrest specific 7 [Source:RGD Symbol%3BAcc:621550]
rn6_v1_chr1_+_164380577_164380577	0.00962289	Foxa2_Foxa1	ENSRNOT00000055321|Gdpd5|ENSRNOG00000036859|glycerophosphodiester phosphodiesterase domain containing 5 [Source:RGD Symbol%3BAcc:1559673]
rn6_v1_chr5_-_128333805_128333805	0.00957327	Foxa2_Foxa1	ENSRNOT00000037523|Zfyve9|ENSRNOG00000027183|zinc finger FYVE-type containing 9 [Source:RGD Symbol%3BAcc:1310856]
rn6_v1_chr1_+_265157379_265157379	0.00911051	Foxa2_Foxa1	ENSRNOT00000022426|Btrc|ENSRNOG00000016280|beta-transducin repeat containing E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:1359721]
rn6_v1_chr1_-_204817080_204817080	0.00908144	Foxa2_Foxa1	ENSRNOT00000077956|Fam53b|ENSRNOG00000061348|family with sequence similarity 53%2C member B [Source:RGD Symbol%3BAcc:1310799]
rn6_v1_chr10_+_86399827_86399827	0.00862066	Foxa2_Foxa1	ENSRNOT00000009299|Grb7|ENSRNOG00000006990|growth factor receptor bound protein 7 [Source:RGD Symbol%3BAcc:619759]
rn6_v1_chr1_+_256955652_256955652	0.00856663	Foxa2_Foxa1	ENSRNOT00000020411|Lgi1|ENSRNOG00000014758|leucine-rich%2C glioma inactivated 1 [Source:RGD Symbol%3BAcc:628742]
rn6_v1_chr2_-_119537837_119537837	0.00849251	Foxa2_Foxa1	ENSRNOT00000015200|Pex5l|ENSRNOG00000011211|peroxisomal biogenesis factor 5-like [Source:RGD Symbol%3BAcc:708407]
rn6_v1_chr11_+_61605937_61606006	0.00845999	Foxa2_Foxa1	ENSRNOT00000093455|Gramd1c|ENSRNOG00000053406|GRAM domain containing 1C [Source:RGD Symbol%3BAcc:1305433]	ENSRNOT00000093242|Gramd1c|ENSRNOG00000053406|GRAM domain containing 1C [Source:RGD Symbol%3BAcc:1305433]
rn6_v1_chr7_-_114848414_114848414	0.00845462	Foxa2_Foxa1	ENSRNOT00000032620|Slc45a4|ENSRNOG00000007818|solute carrier family 45%2C member 4 [Source:RGD Symbol%3BAcc:1309971]
rn6_v1_chr1_+_234252757_234252757	0.00844734	Foxa2_Foxa1	ENSRNOT00000091814|Rorb|ENSRNOG00000013413|RAR-related orphan receptor B [Source:RGD Symbol%3BAcc:1306778]
rn6_v1_chr19_-_41960083_41960083	0.00832259	Foxa2_Foxa1	ENSRNOT00000000279|Zfp821|ENSRNOG00000000262|zinc finger protein 821 [Source:RGD Symbol%3BAcc:1306674]
rn6_v1_chr3_+_160852164_160852164	0.00830694	Foxa2_Foxa1	ENSRNOT00000019127|Rbpjl|ENSRNOG00000026295|recombination signal binding protein for immunoglobulin kappa J region-like [Source:RGD Symbol%3BAcc:1304786]
rn6_v1_chr4_-_168297373_168297373	0.00821586	Foxa2_Foxa1	ENSRNOT00000066575|Lrp6|ENSRNOG00000006338|LDL receptor related protein 6 [Source:RGD Symbol%3BAcc:1304749]
rn6_v1_chr9_-_78607307_78607307	0.00806363	Foxa2_Foxa1	ENSRNOT00000057672|Abca12|ENSRNOG00000015248|ATP binding cassette subfamily A member 12 [Source:RGD Symbol%3BAcc:1304586]
rn6_v1_chr4_-_129515435_129515435	0.00784363	Foxa2_Foxa1	ENSRNOT00000039353|Eogt|ENSRNOG00000024533|EGF domain specific O-linked N-acetylglucosamine transferase [Source:RGD Symbol%3BAcc:1359357]
rn6_v1_chr2_-_116413043_116413043	0.00751195	Foxa2_Foxa1	ENSRNOT00000078148|Mynn|ENSRNOG00000027923|myoneurin [Source:RGD Symbol%3BAcc:1307889]
rn6_v1_chr4_+_115416580_115416580	0.00722573	Foxa2_Foxa1	ENSRNOT00000018303|Atp6v1b1|ENSRNOG00000013573|ATPase H+ transporting V1 subunit B1 [Source:RGD Symbol%3BAcc:1310619]
rn6_v1_chr1_+_153861948_153861948	0.0071847	Foxa2_Foxa1	ENSRNOT00000087067|Me3|ENSRNOG00000017311|malic enzyme 3 [Source:RGD Symbol%3BAcc:1311070]
rn6_v1_chr3_-_64543100_64543100	0.0071782	Foxa2_Foxa1	ENSRNOT00000025803|Zfp385b|ENSRNOG00000019065|zinc finger protein 385B [Source:RGD Symbol%3BAcc:1311181]
rn6_v1_chr11_-_67756799_67756799	0.00692953	Foxa2_Foxa1	ENSRNOT00000030975|Parp9|ENSRNOG00000023463|poly (ADP-ribose) polymerase family%2C member 9 [Source:RGD Symbol%3BAcc:1307534]
rn6_v1_chr4_+_119171245_119171245	0.00676475	Foxa2_Foxa1	ENSRNOT00000067651|Gkn2|ENSRNOG00000009256|gastrokine 2 [Source:RGD Symbol%3BAcc:1311934]
rn6_v1_chr4_+_8166082_8166082	0.00662469	Foxa2_Foxa1	ENSRNOT00000076429|Srpk2|ENSRNOG00000010601|SRSF protein kinase 2 [Source:RGD Symbol%3BAcc:1305107]
rn6_v1_chr1_-_262047332_262047332	0.00650765	Foxa2_Foxa1	ENSRNOT00000067274|Hpse2|ENSRNOG00000043120|heparanase 2 (inactive) [Source:RGD Symbol%3BAcc:1307959]
rn6_v1_chr8_-_102149912_102149912	0.00646275	Foxa2_Foxa1	ENSRNOT00000011263|RGD1309079|ENSRNOG00000008519|similar to Ab2-095 [Source:RGD Symbol%3BAcc:1309079]
rn6_v1_chr11_-_4397361_4397361	0.00634128	Foxa2_Foxa1	ENSRNOT00000046370|Cadm2|ENSRNOG00000030840|cell adhesion molecule 2 [Source:RGD Symbol%3BAcc:1305678]
rn6_v1_chr9_-_20195566_20195566	0.00617138	Foxa2_Foxa1	ENSRNOT00000015223|Adgrf5|ENSRNOG00000011154|adhesion G protein-coupled receptor F5 [Source:RGD Symbol%3BAcc:621679]
rn6_v1_chr3_+_8363937_8363937	0.00615844	Foxa2_Foxa1	ENSRNOT00000019500|Slc27a4|ENSRNOG00000014369|solute carrier family 27 member 4 [Source:RGD Symbol%3BAcc:1307383]
rn6_v1_chr9_-_82345262_82345262	0.00576734	Foxa2_Foxa1	ENSRNOT00000024975|Cnppd1|ENSRNOG00000018325|cyclin Pas1/PHO80 domain containing 1 [Source:RGD Symbol%3BAcc:735175]
rn6_v1_chr8_+_82878941_82878941	0.00563712	Foxa2_Foxa1	ENSRNOT00000014846|Bmp5|ENSRNOG00000010917|bone morphogenetic protein 5 [Source:RGD Symbol%3BAcc:1305979]
rn6_v1_chr7_+_13938302_13938302	0.00530337	Foxa2_Foxa1	ENSRNOT00000009643|Casp14|ENSRNOG00000007352|caspase 14 [Source:RGD Symbol%3BAcc:1311781]
rn6_v1_chr3_-_154042099_154042099	0.00513002	Foxa2_Foxa1	ENSRNOT00000033525|Blcap|ENSRNOG00000024437|bladder cancer associated protein [Source:RGD Symbol%3BAcc:621666]
rn6_v1_chr7_+_78188912_78188912	0.00503596	Foxa2_Foxa1	ENSRNOT00000043079|Rims2|ENSRNOG00000004201|regulating synaptic membrane exocytosis 2 [Source:RGD Symbol%3BAcc:620001]
rn6_v1_chr1_+_107262659_107262659	0.00460714	Foxa2_Foxa1	ENSRNOT00000022499|Gas2|ENSRNOG00000016717|growth arrest-specific 2 [Source:RGD Symbol%3BAcc:1563167]
rn6_v1_chr14_+_8080275_8080277	0.00455081	Foxa2_Foxa1	ENSRNOT00000065965|Mapk10|ENSRNOG00000002079|mitogen activated protein kinase 10 [Source:RGD Symbol%3BAcc:3663]	ENSRNOT00000092542|Mapk10|ENSRNOG00000002079|mitogen activated protein kinase 10 [Source:RGD Symbol%3BAcc:3663]
rn6_v1_chr20_+_31096214_31096214	0.00448314	Foxa2_Foxa1	ENSRNOT00000000676|Lrrc20|ENSRNOG00000000560|leucine rich repeat containing 20 [Source:RGD Symbol%3BAcc:1566140]
rn6_v1_chr2_-_250235435_250235435	0.00431445	Foxa2_Foxa1	ENSRNOT00000088618|Lmo4|ENSRNOG00000009205|LIM domain only 4 [Source:RGD Symbol%3BAcc:1305670]
rn6_v1_chr18_+_83471342_83471342	0.00396371	Foxa2_Foxa1	ENSRNOT00000019384|Neto1|ENSRNOG00000014006|neuropilin and tolloid like 1 [Source:RGD Symbol%3BAcc:1566269]
rn6_v1_chr9_+_64745051_64745051	0.00376191	Foxa2_Foxa1	ENSRNOT00000021527|Spats2l|ENSRNOG00000016012|spermatogenesis associated%2C serine-rich 2-like [Source:RGD Symbol%3BAcc:1309930]
rn6_v1_chr17_+_42133076_42133076	0.00368662	Foxa2_Foxa1	ENSRNOT00000031384|Aldh5a1|ENSRNOG00000023538|aldehyde dehydrogenase 5 family%2C member A1 [Source:RGD Symbol%3BAcc:621422]
rn6_v1_chr9_-_81467760_81467760	0.00345792	Foxa2_Foxa1	ENSRNOT00000090868|Cxcr1|ENSRNOG00000048239|C-X-C motif chemokine receptor 1 [Source:RGD Symbol%3BAcc:2905]
rn6_v1_chr11_+_74984613_74984613	0.00344941	Foxa2_Foxa1	ENSRNOT00000035049|Atp13a5|ENSRNOG00000024127|ATPase 13A5 [Source:RGD Symbol%3BAcc:1306792]
rn6_v1_chr18_+_30509393_30509393	0.00336449	Foxa2_Foxa1	ENSRNOT00000043846|Pcdhb12|ENSRNOG00000033719|protocadherin beta 12 [Source:RGD Symbol%3BAcc:3266]
rn6_v1_chr20_+_12944786_12944786	0.00330164	Foxa2_Foxa1	ENSRNOT00000048218|Pcnt|ENSRNOG00000001276|pericentrin [Source:RGD Symbol%3BAcc:1595865]
rn6_v1_chr6_-_104289668_104289668	0.00314683	Foxa2_Foxa1	ENSRNOT00000085646|Erh|ENSRNOG00000004883|enhancer of rudimentary homolog (Drosophila) [Source:RGD Symbol%3BAcc:1595409]
rn6_v1_chr20_+_12052693_12052693	0.00287877	Foxa2_Foxa1	ENSRNOT00000083851|Adarb1|ENSRNOG00000001227|adenosine deaminase%2C RNA-specific%2C B1 [Source:RGD Symbol%3BAcc:2033]
rn6_v1_chr16_-_23156962_23156962	0.00284172	Foxa2_Foxa1	ENSRNOT00000018543|Sh2d4a|ENSRNOG00000013541|SH2 domain containing 4A [Source:RGD Symbol%3BAcc:1307991]
rn6_v1_chr3_-_161812243_161812291	0.00279227	Foxa2_Foxa1	ENSRNOT00000025238|Slc35c2|ENSRNOG00000018649|solute carrier family 35 member C2 [Source:RGD Symbol%3BAcc:1311250]	ENSRNOT00000087646|Slc35c2|ENSRNOG00000018649|solute carrier family 35 member C2 [Source:RGD Symbol%3BAcc:1311250]
rn6_v1_chr20_-_27757149_27757149	0.00271881	Foxa2_Foxa1	ENSRNOT00000088287|Dse|ENSRNOG00000000824|dermatan sulfate epimerase [Source:RGD Symbol%3BAcc:1305079]
rn6_v1_chr1_+_244615821_244615821	0.00266838	Foxa2_Foxa1	ENSRNOT00000080124|Smarca2|ENSRNOG00000011931|SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 2 [Source:RGD Symbol%3BAcc:1302988]
rn6_v1_chr1_+_100845563_100845563	0.00227538	Foxa2_Foxa1	ENSRNOT00000027478|Akt1s1|ENSRNOG00000020289|AKT1 substrate 1 [Source:RGD Symbol%3BAcc:1312049]
rn6_v1_chr1_+_264741911_264741911	0.00224209	Foxa2_Foxa1	ENSRNOT00000019956|Sema4g|ENSRNOG00000014650|semaphorin 4G [Source:RGD Symbol%3BAcc:1310436]
rn6_v1_chr1_+_166428761_166428761	0.00198966	Foxa2_Foxa1	ENSRNOT00000085555|Stard10|ENSRNOG00000019491|StAR-related lipid transfer domain containing 10 [Source:RGD Symbol%3BAcc:1306548]
rn6_v1_chr7_+_121930615_121930638	0.0019829	Foxa2_Foxa1	ENSRNOT00000091270|Tnrc6b|ENSRNOG00000024907|trinucleotide repeat containing 6B [Source:RGD Symbol%3BAcc:621428]	ENSRNOT00000033975|Tnrc6b|ENSRNOG00000024907|trinucleotide repeat containing 6B [Source:RGD Symbol%3BAcc:621428]
rn6_v1_chr2_+_121165137_121165137	0.00180838	Foxa2_Foxa1	ENSRNOT00000016236|Sox2|ENSRNOG00000012199|SRY box 2 [Source:RGD Symbol%3BAcc:1565646]
rn6_v1_chr11_-_53731779_53731779	0.00173273	Foxa2_Foxa1	ENSRNOT00000002684|Ift57|ENSRNOG00000001958|intraflagellar transport 57 [Source:RGD Symbol%3BAcc:1305947]
rn6_v1_chr18_+_68408890_68408890	0.00140647	Foxa2_Foxa1	ENSRNOT00000039702|Ccdc68|ENSRNOG00000021381|coiled-coil domain containing 68 [Source:RGD Symbol%3BAcc:1561424]
rn6_v1_chr7_+_27248115_27248115	0.00104707	Foxa2_Foxa1	ENSRNOT00000031946|LOC362863|ENSRNOG00000026807|first gene upstream of Nt5dc3 [Source:RGD Symbol%3BAcc:1302940]	ENSRNOT00000059545|LOC362863|ENSRNOG00000026807|first gene upstream of Nt5dc3 [Source:RGD Symbol%3BAcc:1302940]
rn6_v1_chr3_-_154490851_154490851	0.000886945	Foxa2_Foxa1	ENSRNOT00000017213|Tti1|ENSRNOG00000012880|TELO2 interacting protein 1 [Source:RGD Symbol%3BAcc:1562582]
rn6_v1_chr1_-_40972826_40972826	0.00062205	Foxa2_Foxa1	ENSRNOT00000060757|Rmnd1|ENSRNOG00000019501|required for meiotic nuclear division 1 homolog [Source:RGD Symbol%3BAcc:1309546]
rn6_v1_chr16_-_20994379_20994379	0.000570842	Foxa2_Foxa1	ENSRNOT00000027639|Tmem161a|ENSRNOG00000020390|transmembrane protein 161A [Source:RGD Symbol%3BAcc:1307703]
rn6_v1_chr1_-_90149991_90149991	0.000341555	Foxa2_Foxa1	ENSRNOT00000076987|RGD1308428|ENSRNOG00000021129|similar to RIKEN cDNA 4931406P16 [Source:RGD Symbol%3BAcc:1308428]
rn6_v1_chr8_+_85951191_85951191	2.98365e-05	Foxa2_Foxa1	ENSRNOT00000037665|Cd109|ENSRNOG00000025332|CD109 molecule [Source:RGD Symbol%3BAcc:1311287]
