rn6_v1_chr1_-_216080287_216080287	0.157775	Gli1	ENSRNOT00000027682|Th|ENSRNOG00000020410|tyrosine hydroxylase [Source:RGD Symbol%3BAcc:3853]
rn6_v1_chr10_-_90312386_90312386	0.120576	Gli1	ENSRNOT00000028445|Slc4a1|ENSRNOG00000020951|solute carrier family 4 member 1 [Source:RGD Symbol%3BAcc:3710]
rn6_v1_chr6_-_27190126_27190132	0.114123	Gli1	ENSRNOT00000068412|Kcnk3|ENSRNOG00000009790|potassium two pore domain channel subfamily K member 3 [Source:RGD Symbol%3BAcc:61997]	ENSRNOT00000013107|Kcnk3|ENSRNOG00000009790|potassium two pore domain channel subfamily K member 3 [Source:RGD Symbol%3BAcc:61997]
rn6_v1_chr6_+_137997335_137997335	0.0817891	Gli1	ENSRNOT00000006872|Tmem121|ENSRNOG00000005174|transmembrane protein 121 [Source:RGD Symbol%3BAcc:1597216]
rn6_v1_chr16_-_82439441_82439441	0.0612774	Gli1	ENSRNOT00000040315|AABR07026539.1|ENSRNOG00000031681|
rn6_v1_chr1_-_80221417_80221417	0.0592228	Gli1	ENSRNOT00000072149|Fosb|ENSRNOG00000046667|FosB proto-oncogene%2C AP-1 transcription factor subunit [Source:RGD Symbol%3BAcc:1308198]
rn6_v1_chr3_+_154043873_154043873	0.0558392	Gli1	ENSRNOT00000072502|Nnat|ENSRNOG00000024923|neuronatin [Source:RGD Symbol%3BAcc:620155]	ENSRNOT00000034166|Nnat|ENSRNOG00000024923|neuronatin [Source:RGD Symbol%3BAcc:620155]
rn6_v1_chr12_+_47074200_47074200	0.0542192	Gli1	ENSRNOT00000014910|Dynll1|ENSRNOG00000011222|dynein light chain LC8-type 1 [Source:RGD Symbol%3BAcc:619866]
rn6_v1_chr18_-_28454756_28454756	0.0518231	Gli1	ENSRNOT00000040091|Spata24|ENSRNOG00000019976|spermatogenesis associated 24 [Source:RGD Symbol%3BAcc:1311742]
rn6_v1_chr4_+_24617008_24617008	0.0506207	Gli1	ENSRNOT00000086607|Ewsr1|ENSRNOG00000046950|EWS RNA-binding protein 1 [Source:RGD Symbol%3BAcc:1307258]
rn6_v1_chr1_-_80689171_80689171	0.0437403	Gli1	ENSRNOT00000045574|Bcam|ENSRNOG00000029399|basal cell adhesion molecule (Lutheran blood group) [Source:RGD Symbol%3BAcc:68378]
rn6_v1_chr4_+_55715744_55715744	0.0435111	Gli1	ENSRNOT00000010429|Arf5|ENSRNOG00000007806|ADP-ribosylation factor 5 [Source:RGD Symbol%3BAcc:621278]
rn6_v1_chr2_-_46544457_46544457	0.0422416	Gli1	ENSRNOT00000015680|Fst|ENSRNOG00000011631|follistatin [Source:RGD Symbol%3BAcc:2633]
rn6_v1_chr7_-_12326392_12326392	0.0418418	Gli1	ENSRNOT00000039728|Ndufs7|ENSRNOG00000024568|NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Source:RGD Symbol%3BAcc:1310013]
rn6_v1_chr19_-_37938857_37938857	0.0403788	Gli1	ENSRNOT00000026730|Slc12a4|ENSRNOG00000019651|solute carrier family 12 member 4 [Source:RGD Symbol%3BAcc:3687]
rn6_v1_chr3_+_148579920_148579920	0.0395895	Gli1	ENSRNOT00000012432|Hck|ENSRNOG00000009331|HCK proto-oncogene%2C Src family tyrosine kinase [Source:RGD Symbol%3BAcc:2785]
rn6_v1_chr5_+_131380297_131380297	0.039236	Gli1	ENSRNOT00000010548|Agbl4|ENSRNOG00000008011|ATP/GTP binding protein-like 4 [Source:RGD Symbol%3BAcc:6493177]
rn6_v1_chr5_-_17061361_17061361	0.0390153	Gli1	ENSRNOT00000089318|Penk|ENSRNOG00000008943|proenkephalin [Source:RGD Symbol%3BAcc:68946]
rn6_v1_chr1_-_84812486_84812486	0.0381395	Gli1	ENSRNOT00000078369|AABR07002779.1|ENSRNOG00000054614|
rn6_v1_chr5_-_60871705_60871705	0.0377166	Gli1	ENSRNOT00000016582|Exosc3|ENSRNOG00000012409|exosome component 3 [Source:RGD Symbol%3BAcc:1304739]
rn6_v1_chr10_+_38889370_38889370	0.0341765	Gli1	ENSRNOT00000091236|Sept8|ENSRNOG00000007462|septin 8 [Source:RGD Symbol%3BAcc:1308449]
rn6_v1_chr5_+_63781801_63781801	0.0332842	Gli1	ENSRNOT00000008302|Nr4a3|ENSRNOG00000005964|nuclear receptor subfamily 4%2C group A%2C member 3 [Source:RGD Symbol%3BAcc:61882]
rn6_v1_chr7_-_2712723_2712723	0.0300011	Gli1	ENSRNOT00000004363|Il23a|ENSRNOG00000003254|interleukin 23 subunit alpha [Source:RGD Symbol%3BAcc:620873]
rn6_v1_chr4_-_170932618_170932618	0.0297917	Gli1	ENSRNOT00000007779|Arhgdib|ENSRNOG00000005809|Rho GDP dissociation inhibitor beta [Source:RGD Symbol%3BAcc:1305383]
rn6_v1_chr19_+_46761570_46761570	0.0269702	Gli1	ENSRNOT00000058779|Wwox|ENSRNOG00000012030|WW domain-containing oxidoreductase [Source:RGD Symbol%3BAcc:1309927]
rn6_v1_chr7_-_96464049_96464049	0.0249079	Gli1	ENSRNOT00000006517|Has2|ENSRNOG00000004854|hyaluronan synthase 2 [Source:RGD Symbol%3BAcc:2781]
rn6_v1_chr7_+_121480723_121480723	0.0248546	Gli1	ENSRNOT00000065304|Atf4|ENSRNOG00000017801|activating transcription factor 4 [Source:RGD Symbol%3BAcc:621863]
rn6_v1_chr5_+_172273459_172273459	0.0244628	Gli1	ENSRNOT00000017957|Mmel1|ENSRNOG00000012593|membrane metallo-endopeptidase-like 1 [Source:RGD Symbol%3BAcc:1309299]
rn6_v1_chr10_+_86860685_86860685	0.0239313	Gli1	ENSRNOT00000084644|Rara|ENSRNOG00000009972|retinoic acid receptor%2C alpha [Source:RGD Symbol%3BAcc:3534]
rn6_v1_chr10_+_59566223_59566268	0.0236821	Gli1	ENSRNOT00000024068|P2rx1|ENSRNOG00000017606|purinergic receptor P2X 1 [Source:RGD Symbol%3BAcc:3240]	ENSRNOT00000088245|P2rx1|ENSRNOG00000017606|purinergic receptor P2X 1 [Source:RGD Symbol%3BAcc:3240]
rn6_v1_chr4_-_117631716_117631716	0.0225913	Gli1	ENSRNOT00000057475|LOC103690006|ENSRNOG00000045539|RNA/RNP complex-1-interacting phosphatase [Source:RGD Symbol%3BAcc:9168966]
rn6_v1_chr8_-_55177818_55177818	0.0220684	Gli1	ENSRNOT00000013960|Hspb2|ENSRNOG00000010402|heat shock protein family B (small) member 2 [Source:RGD Symbol%3BAcc:70914]
rn6_v1_chr1_+_207508414_207508414	0.0218552	Gli1	ENSRNOT00000054896|Nps|ENSRNOG00000036653|neuropeptide S [Source:RGD Symbol%3BAcc:2324597]
rn6_v1_chr18_+_58270410_58270410	0.0216015	Gli1	ENSRNOT00000067554|Apcdd1|ENSRNOG00000043304|APC down-regulated 1 [Source:RGD Symbol%3BAcc:1589962]
rn6_v1_chr10_+_65448950_65448961	0.0214887	Gli1	ENSRNOT00000082348|Rab34|ENSRNOG00000023375|RAB34%2C member RAS oncogene family [Source:RGD Symbol%3BAcc:1305058]	ENSRNOT00000037016|Rab34|ENSRNOG00000023375|RAB34%2C member RAS oncogene family [Source:RGD Symbol%3BAcc:1305058]
rn6_v1_chr16_+_7212488_7212488	0.0212575	Gli1	ENSRNOT00000024840|Nt5dc2|ENSRNOG00000018358|5'-nucleotidase domain containing 2 [Source:RGD Symbol%3BAcc:1305524]
rn6_v1_chr3_-_11102515_11102515	0.0208702	Gli1	ENSRNOT00000035580|Fam78a|ENSRNOG00000023352|family with sequence similarity 78%2C member A [Source:RGD Symbol%3BAcc:1566351]
rn6_v1_chr18_+_57011575_57011575	0.0208111	Gli1	ENSRNOT00000026679|Il17b|ENSRNOG00000019695|interleukin 17B [Source:RGD Symbol%3BAcc:620614]
rn6_v1_chrX_-_72370044_72370044	0.0205496	Gli1	ENSRNOT00000004224|Hdac8|ENSRNOG00000003122|histone deacetylase 8 [Source:RGD Symbol%3BAcc:1562895]
rn6_v1_chr16_+_54332660_54332660	0.0200479	Gli1	ENSRNOT00000037685|Mtus1|ENSRNOG00000010748|microtubule associated tumor suppressor 1 [Source:RGD Symbol%3BAcc:631381]
rn6_v1_chr1_+_84304228_84304228	0.0200136	Gli1	ENSRNOT00000024771|Prx|ENSRNOG00000018369|periaxin [Source:RGD Symbol%3BAcc:619960]
rn6_v1_chr5_+_135962911_135962911	0.0199771	Gli1	ENSRNOT00000087353|Ptch2|ENSRNOG00000057616|patched 2 [Source:RGD Symbol%3BAcc:1309039]
rn6_v1_chr8_+_65686648_65686648	0.0199162	Gli1	ENSRNOT00000017233|Uaca|ENSRNOG00000012868|uveal autoantigen with coiled-coil domains and ankyrin repeats [Source:RGD Symbol%3BAcc:1560011]
rn6_v1_chr18_-_19275273_19275273	0.0185784	Gli1	ENSRNOT00000041707|LOC102547344|ENSRNOG00000030156|lateral signaling target protein 2 homolog [Source:RGD Symbol%3BAcc:7524065]
rn6_v1_chr11_+_47061354_47061354	0.0180281	Gli1	ENSRNOT00000039997|Pcnp|ENSRNOG00000028411|PEST proteolytic signal containing nuclear protein [Source:RGD Symbol%3BAcc:1563775]
rn6_v1_chr2_+_225645568_225645568	0.0180065	Gli1	ENSRNOT00000017878|Abca4|ENSRNOG00000012892|ATP binding cassette subfamily A member 4 [Source:RGD Symbol%3BAcc:1309445]
rn6_v1_chr1_-_261986759_261986759	0.0179857	Gli1	ENSRNOT00000021257|Pyroxd2|ENSRNOG00000015807|pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol%3BAcc:1303232]
rn6_v1_chr5_+_126164674_126164674	0.0177637	Gli1	ENSRNOT00000009402|Dhcr24|ENSRNOG00000006787|24-dehydrocholesterol reductase [Source:RGD Symbol%3BAcc:1306529]
rn6_v1_chr17_-_84614228_84614228	0.0158865	Gli1	ENSRNOT00000043042|AABR07028748.1|ENSRNOG00000030638|
rn6_v1_chr3_+_152752091_152752091	0.0143646	Gli1	ENSRNOT00000037177|Dlgap4|ENSRNOG00000020225|DLG associated protein 4 [Source:RGD Symbol%3BAcc:708350]
rn6_v1_chrX_-_115426083_115426083	0.0142175	Gli1	ENSRNOT00000014756|AABR07040947.1|ENSRNOG00000011100|
rn6_v1_chr3_-_148312791_148312791	0.0139376	Gli1	ENSRNOT00000091419|Bcl2l1|ENSRNOG00000007946|Bcl2-like 1 [Source:RGD Symbol%3BAcc:2200]
rn6_v1_chr17_-_1093873_1093873	0.0121198	Gli1	ENSRNOT00000086130|Ptch1|ENSRNOG00000019354|patched 1 [Source:RGD Symbol%3BAcc:621425]
rn6_v1_chr10_-_108321644_108321644	0.0117707	Gli1	ENSRNOT00000075171|Tbc1d16|ENSRNOG00000049758|TBC1 domain family%2C member 16 [Source:RGD Symbol%3BAcc:1588560]
rn6_v1_chr2_+_198040536_198040536	0.0116918	Gli1	ENSRNOT00000028744|Anp32e|ENSRNOG00000021168|acidic nuclear phosphoprotein 32 family member E [Source:RGD Symbol%3BAcc:1310611]
rn6_v1_chr3_-_147481073_147481073	0.0113023	Gli1	ENSRNOT00000084722|Fam110a|ENSRNOG00000050946|family with sequence similarity 110%2C member A [Source:RGD Symbol%3BAcc:1308904]
rn6_v1_chr1_+_192025710_192025710	0.0111786	Gli1	ENSRNOT00000077457|Ubfd1|ENSRNOG00000018243|ubiquitin family domain containing 1 [Source:RGD Symbol%3BAcc:1306614]
rn6_v1_chr10_-_88122233_88122233	0.0108726	Gli1	ENSRNOT00000083895|Krt14|ENSRNOG00000003899|keratin 14 [Source:RGD Symbol%3BAcc:1307463]	ENSRNOT00000005285|Krt14|ENSRNOG00000003899|keratin 14 [Source:RGD Symbol%3BAcc:1307463]
rn6_v1_chr7_+_14643704_14643704	0.0107002	Gli1	ENSRNOT00000044642|AABR07055875.1|ENSRNOG00000050603|
rn6_v1_chr4_+_61924013_61924013	0.0105311	Gli1	ENSRNOT00000090717|Bpgm|ENSRNOG00000010133|bisphosphoglycerate mutase [Source:RGD Symbol%3BAcc:735018]
rn6_v1_chrX_+_15049462_15049462	0.0104227	Gli1	ENSRNOT00000007015|Ebp|ENSRNOG00000004903|emopamil binding protein (sterol isomerase) [Source:RGD Symbol%3BAcc:620957]
rn6_v1_chr5_+_140923914_140923914	0.00874437	Gli1	ENSRNOT00000020929|Heyl|ENSRNOG00000015318|hes-related family bHLH transcription factor with YRPW motif-like [Source:RGD Symbol%3BAcc:1305022]
rn6_v1_chr9_-_10734073_10734073	0.00873195	Gli1	ENSRNOT00000071199|Kdm4b|ENSRNOG00000049221|lysine demethylase 4B [Source:RGD Symbol%3BAcc:1588576]
rn6_v1_chr2_+_12102487_12102598	0.00861752	Gli1	ENSRNOT00000089209|LOC100912538|ENSRNOG00000048563|centrin-3-like [Source:RGD Symbol%3BAcc:6486167]	ENSRNOT00000072155|LOC100912538|ENSRNOG00000048563|centrin-3-like [Source:RGD Symbol%3BAcc:6486167]
rn6_v1_chr10_-_13580821_13580821	0.00831874	Gli1	ENSRNOT00000009735|Ntn3|ENSRNOG00000006970|netrin 3 [Source:RGD Symbol%3BAcc:619811]
rn6_v1_chr1_-_210739600_210739600	0.00823407	Gli1	ENSRNOT00000031734|Tcerg1l|ENSRNOG00000016737|transcription elongation regulator 1-like [Source:RGD Symbol%3BAcc:1562437]
rn6_v1_chr1_+_144070754_144070754	0.00823272	Gli1	ENSRNOT00000079989|Sh3gl3|ENSRNOG00000019776|SH3 domain-containing GRB2-like 3 [Source:RGD Symbol%3BAcc:620578]
rn6_v1_chr10_+_86669233_86669233	0.00812796	Gli1	ENSRNOT00000012340|Thra|ENSRNOG00000009066|thyroid hormone receptor alpha [Source:RGD Symbol%3BAcc:3857]
rn6_v1_chr5_+_126698582_126698582	0.00790117	Gli1	ENSRNOT00000012427|Cdcp2|ENSRNOG00000009221|CUB domain containing protein 2 [Source:RGD Symbol%3BAcc:1563467]
rn6_v1_chr1_-_220467159_220467159	0.00765507	Gli1	ENSRNOT00000075365|Tmem151a|ENSRNOG00000049951|transmembrane protein 151A [Source:RGD Symbol%3BAcc:1310680]
rn6_v1_chr1_+_113034227_113034266	0.00725637	Gli1	ENSRNOT00000081831|Gabrb3|ENSRNOG00000060599|gamma-aminobutyric acid type A receptor beta 3 subunit [Source:RGD Symbol%3BAcc:2651]	ENSRNOT00000077877|Gabrb3|ENSRNOG00000060599|gamma-aminobutyric acid type A receptor beta 3 subunit [Source:RGD Symbol%3BAcc:2651]	ENSRNOT00000077594|Gabrb3|ENSRNOG00000060599|gamma-aminobutyric acid type A receptor beta 3 subunit [Source:RGD Symbol%3BAcc:2651]
rn6_v1_chr20_-_10968432_10968432	0.0069701	Gli1	ENSRNOT00000001593|Cstb|ENSRNOG00000001201|cystatin B [Source:RGD Symbol%3BAcc:2435]
rn6_v1_chr15_+_34155504_34155504	0.00680599	Gli1	ENSRNOT00000024782|Dhrs4|ENSRNOG00000018239|dehydrogenase/reductase 4 [Source:RGD Symbol%3BAcc:708482]
rn6_v1_chr5_+_133620706_133620706	0.00671296	Gli1	ENSRNOT00000053202|Gm12830|ENSRNOG00000035079|predicted gene 12830 [Source:MGI Symbol%3BAcc:MGI:3649998]
rn6_v1_chr1_-_170397191_170397191	0.0062004	Gli1	ENSRNOT00000090181|Apbb1|ENSRNOG00000018020|amyloid beta precursor protein binding family B member 1 [Source:RGD Symbol%3BAcc:2122]
rn6_v1_chr5_-_6186329_6186329	0.00582127	Gli1	ENSRNOT00000012610|Sulf1|ENSRNOG00000009037|sulfatase 1 [Source:RGD Symbol%3BAcc:708554]
rn6_v1_chr1_+_72636959_72636959	0.00556434	Gli1	ENSRNOT00000023489|Il11|ENSRNOG00000017386|interleukin 11 [Source:RGD Symbol%3BAcc:621475]
rn6_v1_chr1_+_192025357_192025357	0.00480673	Gli1	ENSRNOT00000025072|Ubfd1|ENSRNOG00000018243|ubiquitin family domain containing 1 [Source:RGD Symbol%3BAcc:1306614]
rn6_v1_chr18_+_79406381_79406381	0.0045191	Gli1	ENSRNOT00000022303|Mbp|ENSRNOG00000016516|myelin basic protein [Source:RGD Symbol%3BAcc:3054]	ENSRNOT00000058295|Mbp|ENSRNOG00000016516|myelin basic protein [Source:RGD Symbol%3BAcc:3054]	ENSRNOT00000058296|Mbp|ENSRNOG00000016516|myelin basic protein [Source:RGD Symbol%3BAcc:3054]	ENSRNOT00000022280|Mbp|ENSRNOG00000016516|myelin basic protein [Source:RGD Symbol%3BAcc:3054]
rn6_v1_chr10_+_20320878_20320878	0.00448916	Gli1	ENSRNOT00000009714|Slit3|ENSRNOG00000007377|slit guidance ligand 3 [Source:RGD Symbol%3BAcc:69311]
rn6_v1_chr8_-_23084879_23084879	0.00425705	Gli1	ENSRNOT00000018874|Zfp653|ENSRNOG00000014065|zinc finger protein 653 [Source:RGD Symbol%3BAcc:1308754]
rn6_v1_chr5_-_65073012_65073012	0.00424901	Gli1	ENSRNOT00000007957|Grin3a|ENSRNOG00000005723|glutamate ionotropic receptor NMDA type subunit 3A [Source:RGD Symbol%3BAcc:621704]
rn6_v1_chr7_+_133089166_133089166	0.00362951	Gli1	ENSRNOT00000085280|AC096792.1|ENSRNOG00000054624|
rn6_v1_chr16_+_61758917_61758917	0.00358802	Gli1	ENSRNOT00000084858|Leprotl1|ENSRNOG00000012601|leptin receptor overlapping transcript-like 1 [Source:RGD Symbol%3BAcc:1307168]
rn6_v1_chr8_-_59239954_59239954	0.00336574	Gli1	ENSRNOT00000016104|Acsbg1|ENSRNOG00000011381|acyl-CoA synthetase bubblegum family member 1 [Source:RGD Symbol%3BAcc:708557]
rn6_v1_chr1_-_91855983_91855983	0.00293882	Gli1	ENSRNOT00000017172|Rgs9bp|ENSRNOG00000012877|regulator of G protein signaling 9 binding protein [Source:RGD Symbol%3BAcc:1561747]
rn6_v1_chr2_+_248715281_248715281	0.00289928	Gli1	ENSRNOT00000089648|Gtf2b|ENSRNOG00000011135|general transcription factor IIB [Source:RGD Symbol%3BAcc:619735]
rn6_v1_chr19_+_37330930_37330930	0.00237759	Gli1	ENSRNOT00000022439|Plekhg4|ENSRNOG00000016479|pleckstrin homology and RhoGEF domain containing G4 [Source:RGD Symbol%3BAcc:1310790]
rn6_v1_chr19_+_53055745_53055745	0.00232691	Gli1	ENSRNOT00000074430|Foxl1|ENSRNOG00000047125|forkhead box L1 [Source:RGD Symbol%3BAcc:1584212]
rn6_v1_chr7_+_141326950_141326950	0.0014091	Gli1	ENSRNOT00000084075|Asic1|ENSRNOG00000059765|acid sensing ion channel subunit 1 [Source:RGD Symbol%3BAcc:71062]
rn6_v1_chr6_+_96871625_96871625	0.0013864	Gli1	ENSRNOT00000012361|Snapc1|ENSRNOG00000009296|small nuclear RNA activating complex%2C polypeptide 1 [Source:RGD Symbol%3BAcc:1304671]
rn6_v1_chr3_+_8450612_8450612	0.000200386	Gli1	ENSRNOT00000040457|Odf2|ENSRNOG00000014584|outer dense fiber of sperm tails 2 [Source:RGD Symbol%3BAcc:3229]
