rn6_v1_chr10_-_90312386_90312386	0.43685	Gli3_Zic1	ENSRNOT00000028445|Slc4a1|ENSRNOG00000020951|solute carrier family 4 member 1 [Source:RGD Symbol%3BAcc:3710]
rn6_v1_chr1_-_216080287_216080287	0.394363	Gli3_Zic1	ENSRNOT00000027682|Th|ENSRNOG00000020410|tyrosine hydroxylase [Source:RGD Symbol%3BAcc:3853]
rn6_v1_chr6_-_27190126_27190132	0.344122	Gli3_Zic1	ENSRNOT00000068412|Kcnk3|ENSRNOG00000009790|potassium two pore domain channel subfamily K member 3 [Source:RGD Symbol%3BAcc:61997]	ENSRNOT00000013107|Kcnk3|ENSRNOG00000009790|potassium two pore domain channel subfamily K member 3 [Source:RGD Symbol%3BAcc:61997]
rn6_v1_chr1_-_80744831_80744831	0.312203	Gli3_Zic1	ENSRNOT00000025913|Bcl3|ENSRNOG00000043416|B-cell CLL/lymphoma 3 [Source:RGD Symbol%3BAcc:1589465]
rn6_v1_chr3_+_154043873_154043873	0.198814	Gli3_Zic1	ENSRNOT00000072502|Nnat|ENSRNOG00000024923|neuronatin [Source:RGD Symbol%3BAcc:620155]	ENSRNOT00000034166|Nnat|ENSRNOG00000024923|neuronatin [Source:RGD Symbol%3BAcc:620155]
rn6_v1_chr18_-_28454756_28454756	0.190143	Gli3_Zic1	ENSRNOT00000040091|Spata24|ENSRNOG00000019976|spermatogenesis associated 24 [Source:RGD Symbol%3BAcc:1311742]
rn6_v1_chr5_-_77945016_77945016	0.177606	Gli3_Zic1	ENSRNOT00000076223|Zfp37|ENSRNOG00000051078|zinc finger protein 37 [Source:RGD Symbol%3BAcc:620723]
rn6_v1_chr16_+_54332660_54332660	0.166188	Gli3_Zic1	ENSRNOT00000037685|Mtus1|ENSRNOG00000010748|microtubule associated tumor suppressor 1 [Source:RGD Symbol%3BAcc:631381]
rn6_v1_chr10_+_91710495_91710495	0.158033	Gli3_Zic1	ENSRNOT00000033276|Rprml|ENSRNOG00000028436|reprimo-like [Source:RGD Symbol%3BAcc:1589060]
rn6_v1_chr7_-_12326392_12326392	0.141288	Gli3_Zic1	ENSRNOT00000039728|Ndufs7|ENSRNOG00000024568|NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Source:RGD Symbol%3BAcc:1310013]
rn6_v1_chr4_+_24617008_24617008	0.123776	Gli3_Zic1	ENSRNOT00000086607|Ewsr1|ENSRNOG00000046950|EWS RNA-binding protein 1 [Source:RGD Symbol%3BAcc:1307258]
rn6_v1_chr12_+_47074200_47074200	0.121771	Gli3_Zic1	ENSRNOT00000014910|Dynll1|ENSRNOG00000011222|dynein light chain LC8-type 1 [Source:RGD Symbol%3BAcc:619866]
rn6_v1_chr6_+_34155017_34155017	0.121627	Gli3_Zic1	ENSRNOT00000073663|Ttc32|ENSRNOG00000049088|tetratricopeptide repeat domain 32 [Source:RGD Symbol%3BAcc:1585566]
rn6_v1_chr1_-_259357056_259357056	0.116907	Gli3_Zic1	ENSRNOT00000022000|Pdlim1|ENSRNOG00000016166|PDZ and LIM domain 1 [Source:RGD Symbol%3BAcc:68324]
rn6_v1_chr4_+_153774486_153774486	0.107725	Gli3_Zic1	ENSRNOT00000074096|Tuba8|ENSRNOG00000048169|tubulin%2C alpha 8 [Source:RGD Symbol%3BAcc:1566041]
rn6_v1_chr1_-_72366455_72366455	0.106948	Gli3_Zic1	ENSRNOT00000031786|LOC100911196|ENSRNOG00000028628|zinc finger protein 865-like [Source:RGD Symbol%3BAcc:6494165]
rn6_v1_chr9_+_80118029_80118029	0.106628	Gli3_Zic1	ENSRNOT00000023068|Igfbp2|ENSRNOG00000016957|insulin-like growth factor binding protein 2 [Source:RGD Symbol%3BAcc:2873]
rn6_v1_chr12_+_2046472_2046472	0.105909	Gli3_Zic1	ENSRNOT00000001289|Zfp358|ENSRNOG00000000974|zinc finger protein 358 [Source:RGD Symbol%3BAcc:1310416]
rn6_v1_chr4_+_55715744_55715744	0.105033	Gli3_Zic1	ENSRNOT00000010429|Arf5|ENSRNOG00000007806|ADP-ribosylation factor 5 [Source:RGD Symbol%3BAcc:621278]
rn6_v1_chr8_-_55177818_55177818	0.103919	Gli3_Zic1	ENSRNOT00000013960|Hspb2|ENSRNOG00000010402|heat shock protein family B (small) member 2 [Source:RGD Symbol%3BAcc:70914]
rn6_v1_chr6_+_137997335_137997335	0.102386	Gli3_Zic1	ENSRNOT00000006872|Tmem121|ENSRNOG00000005174|transmembrane protein 121 [Source:RGD Symbol%3BAcc:1597216]
rn6_v1_chr16_-_82439441_82439441	0.100712	Gli3_Zic1	ENSRNOT00000040315|AABR07026539.1|ENSRNOG00000031681|
rn6_v1_chr5_-_17061361_17061361	0.100468	Gli3_Zic1	ENSRNOT00000089318|Penk|ENSRNOG00000008943|proenkephalin [Source:RGD Symbol%3BAcc:68946]
rn6_v1_chr4_+_117962319_117962319	0.0957765	Gli3_Zic1	ENSRNOT00000057441|Tgfa|ENSRNOG00000016182|transforming growth factor alpha [Source:RGD Symbol%3BAcc:3849]
rn6_v1_chrX_-_13116743_13116743	0.0938505	Gli3_Zic1	ENSRNOT00000004305|Mid1ip1|ENSRNOG00000003228|MID1 interacting protein 1 [Source:RGD Symbol%3BAcc:1303258]
rn6_v1_chr10_-_108196217_108196217	0.0914044	Gli3_Zic1	ENSRNOT00000075440|Cbx4|ENSRNOG00000046207|chromobox 4 [Source:RGD Symbol%3BAcc:1587243]
rn6_v1_chr7_+_11769400_11769400	0.0890314	Gli3_Zic1	ENSRNOT00000044417|Jsrp1|ENSRNOG00000032951|junctional sarcoplasmic reticulum protein 1 [Source:RGD Symbol%3BAcc:1596084]
rn6_v1_chr8_+_65686648_65686648	0.0863908	Gli3_Zic1	ENSRNOT00000017233|Uaca|ENSRNOG00000012868|uveal autoantigen with coiled-coil domains and ankyrin repeats [Source:RGD Symbol%3BAcc:1560011]
rn6_v1_chr10_+_46314375_46314375	0.0861531	Gli3_Zic1	ENSRNOT00000088300|Med9|ENSRNOG00000053961|mediator complex subunit 9 [Source:RGD Symbol%3BAcc:1563669]
rn6_v1_chr16_+_21288876_21288876	0.0859512	Gli3_Zic1	ENSRNOT00000027990|Cilp2|ENSRNOG00000020622|cartilage intermediate layer protein 2 [Source:RGD Symbol%3BAcc:1311157]
rn6_v1_chr18_+_32594958_32594958	0.0851776	Gli3_Zic1	ENSRNOT00000018511|Spry4|ENSRNOG00000013851|sprouty RTK signaling antagonist 4 [Source:RGD Symbol%3BAcc:1305324]
rn6_v1_chr1_+_101783621_101783621	0.0846492	Gli3_Zic1	ENSRNOT00000067679|Lmtk3|ENSRNOG00000021048|lemur tyrosine kinase 3 [Source:RGD Symbol%3BAcc:1588641]
rn6_v1_chr16_+_80826681_80826681	0.0844155	Gli3_Zic1	ENSRNOT00000000123|Coprs|ENSRNOG00000000111|coordinator of PRMT5 and differentiation stimulator [Source:RGD Symbol%3BAcc:1565675]
rn6_v1_chrX_-_106747303_106747303	0.0819414	Gli3_Zic1	ENSRNOT00000073529|Tceal5|ENSRNOG00000046280|transcription elongation factor A like 5 [Source:RGD Symbol%3BAcc:1594149]
rn6_v1_chr5_+_135962911_135962911	0.0780689	Gli3_Zic1	ENSRNOT00000087353|Ptch2|ENSRNOG00000057616|patched 2 [Source:RGD Symbol%3BAcc:1309039]
rn6_v1_chr1_+_207508414_207508414	0.0743688	Gli3_Zic1	ENSRNOT00000054896|Nps|ENSRNOG00000036653|neuropeptide S [Source:RGD Symbol%3BAcc:2324597]
rn6_v1_chr19_-_37938857_37938857	0.0723157	Gli3_Zic1	ENSRNOT00000026730|Slc12a4|ENSRNOG00000019651|solute carrier family 12 member 4 [Source:RGD Symbol%3BAcc:3687]
rn6_v1_chr2_-_235831670_235831670	0.0709842	Gli3_Zic1	ENSRNOT00000037393|Ostc|ENSRNOG00000023322|oligosaccharyltransferase complex non-catalytic subunit [Source:RGD Symbol%3BAcc:1560708]
rn6_v1_chr9_+_82556573_82556573	0.0692193	Gli3_Zic1	ENSRNOT00000026860|Des|ENSRNOG00000019810|desmin [Source:RGD Symbol%3BAcc:620686]
rn6_v1_chr4_-_100783016_100783016	0.0686926	Gli3_Zic1	ENSRNOT00000020671|Kcmf1|ENSRNOG00000015097|potassium channel modulatory factor 1 [Source:RGD Symbol%3BAcc:1591490]
rn6_v1_chr17_-_1093873_1093873	0.0651278	Gli3_Zic1	ENSRNOT00000086130|Ptch1|ENSRNOG00000019354|patched 1 [Source:RGD Symbol%3BAcc:621425]
rn6_v1_chr2_-_172459165_172459165	0.0642816	Gli3_Zic1	ENSRNOT00000057473|Schip1|ENSRNOG00000009276|schwannomin interacting protein 1 [Source:RGD Symbol%3BAcc:1309962]
rn6_v1_chr1_-_176607466_176607466	0.0627336	Gli3_Zic1	ENSRNOT00000022984|Galnt18|ENSRNOG00000017021|polypeptide N-acetylgalactosaminyltransferase 18 [Source:RGD Symbol%3BAcc:1309623]
rn6_v1_chr6_+_132702448_132702448	0.060502	Gli3_Zic1	ENSRNOT00000005743|Yy1|ENSRNOG00000004339|YY1 transcription factor [Source:RGD Symbol%3BAcc:3982]
rn6_v1_chr11_-_25350974_25350974	0.0598853	Gli3_Zic1	ENSRNOT00000002187|Adamts1|ENSRNOG00000001607|ADAM metallopeptidase with thrombospondin type 1 motif%2C 1 [Source:RGD Symbol%3BAcc:621241]
rn6_v1_chr12_+_39790965_39790965	0.0596988	Gli3_Zic1	ENSRNOT00000030604|Tctn1|ENSRNOG00000028523|tectonic family member 1 [Source:RGD Symbol%3BAcc:1566266]
rn6_v1_chr1_+_97632473_97632473	0.0594627	Gli3_Zic1	ENSRNOT00000023671|Vstm2b|ENSRNOG00000017456|V-set and transmembrane domain containing 2B [Source:RGD Symbol%3BAcc:1306235]
rn6_v1_chr10_+_65448950_65448961	0.0593138	Gli3_Zic1	ENSRNOT00000082348|Rab34|ENSRNOG00000023375|RAB34%2C member RAS oncogene family [Source:RGD Symbol%3BAcc:1305058]	ENSRNOT00000037016|Rab34|ENSRNOG00000023375|RAB34%2C member RAS oncogene family [Source:RGD Symbol%3BAcc:1305058]
rn6_v1_chr5_-_60871705_60871705	0.0590064	Gli3_Zic1	ENSRNOT00000016582|Exosc3|ENSRNOG00000012409|exosome component 3 [Source:RGD Symbol%3BAcc:1304739]
rn6_v1_chr9_-_82699551_82699551	0.0583424	Gli3_Zic1	ENSRNOT00000020673|Obsl1|ENSRNOG00000015346|obscurin-like 1 [Source:RGD Symbol%3BAcc:1306073]
rn6_v1_chr1_+_81208212_81208212	0.0580427	Gli3_Zic1	ENSRNOT00000026288|Lypd5|ENSRNOG00000019432|Ly6/Plaur domain containing 5 [Source:RGD Symbol%3BAcc:1560355]
rn6_v1_chr9_+_43331155_43331155	0.05781	Gli3_Zic1	ENSRNOT00000023036|Zap70|ENSRNOG00000016995|zeta chain of T cell receptor associated protein kinase 70 [Source:RGD Symbol%3BAcc:3983]
rn6_v1_chr15_+_2374582_2374582	0.057761	Gli3_Zic1	ENSRNOT00000019644|Zfp503|ENSRNOG00000014237|zinc finger protein 503 [Source:RGD Symbol%3BAcc:1312018]
rn6_v1_chr6_+_51662224_51662224	0.0575253	Gli3_Zic1	ENSRNOT00000060006|Ccdc71l|ENSRNOG00000039207|coiled-coil domain containing 71-like [Source:RGD Symbol%3BAcc:1560812]
rn6_v1_chr10_+_86860685_86860685	0.0568094	Gli3_Zic1	ENSRNOT00000084644|Rara|ENSRNOG00000009972|retinoic acid receptor%2C alpha [Source:RGD Symbol%3BAcc:3534]
rn6_v1_chr1_+_84304228_84304228	0.0553033	Gli3_Zic1	ENSRNOT00000024771|Prx|ENSRNOG00000018369|periaxin [Source:RGD Symbol%3BAcc:619960]
rn6_v1_chr2_-_115836846_115836846	0.0545466	Gli3_Zic1	ENSRNOT00000014359|Cldn11|ENSRNOG00000010263|claudin 11 [Source:RGD Symbol%3BAcc:71081]
rn6_v1_chr20_+_44680449_44680449	0.0541424	Gli3_Zic1	ENSRNOT00000000728|Traf3ip2|ENSRNOG00000000595|Traf3 interacting protein 2 [Source:RGD Symbol%3BAcc:1593240]
rn6_v1_chrX_-_72370044_72370044	0.0531541	Gli3_Zic1	ENSRNOT00000004224|Hdac8|ENSRNOG00000003122|histone deacetylase 8 [Source:RGD Symbol%3BAcc:1562895]
rn6_v1_chr10_+_54246250_54246250	0.0530509	Gli3_Zic1	ENSRNOT00000004880|Rcvrn|ENSRNOG00000003633|recoverin [Source:RGD Symbol%3BAcc:620258]
rn6_v1_chr4_-_157263890_157263890	0.0526229	Gli3_Zic1	ENSRNOT00000065416|Ptpn6|ENSRNOG00000014294|protein tyrosine phosphatase%2C non-receptor type 6 [Source:RGD Symbol%3BAcc:620660]
rn6_v1_chr9_-_71778188_71778323	0.0522723	Gli3_Zic1	ENSRNOT00000064562|Crygd|ENSRNOG00000032219|crystallin%2C gamma D [Source:RGD Symbol%3BAcc:2422]	ENSRNOT00000050886|Crygd|ENSRNOG00000032219|crystallin%2C gamma D [Source:RGD Symbol%3BAcc:2422]
rn6_v1_chr12_-_17904254_17904254	0.0513652	Gli3_Zic1	ENSRNOT00000060192|LOC680273|ENSRNOG00000039296|similar to Forkhead box protein L1 (Forkhead-related protein FKHL11) (Forkhead-related transcription factor 7) (FREAC-7) [Source:RGD Symbol%3BAcc:1594158]
rn6_v1_chr9_+_41045363_41045363	0.0506087	Gli3_Zic1	ENSRNOT00000066284|Cfc1|ENSRNOG00000042646|cripto%2C FRL-1%2C cryptic family 1 [Source:RGD Symbol%3BAcc:1562188]
rn6_v1_chr12_+_13323547_13323547	0.0505199	Gli3_Zic1	ENSRNOT00000074138|Zfp853|ENSRNOG00000030579|zinc finger protein 853 [Source:RGD Symbol%3BAcc:1563095]
rn6_v1_chr6_-_138093643_138093643	0.0502814	Gli3_Zic1	ENSRNOT00000045874|Igh-6|ENSRNOG00000048402|immunoglobulin heavy chain 6 [Source:RGD Symbol%3BAcc:1359202]
rn6_v1_chr7_-_96464049_96464049	0.0502041	Gli3_Zic1	ENSRNOT00000006517|Has2|ENSRNOG00000004854|hyaluronan synthase 2 [Source:RGD Symbol%3BAcc:2781]
rn6_v1_chr1_-_80689171_80689171	0.0499903	Gli3_Zic1	ENSRNOT00000045574|Bcam|ENSRNOG00000029399|basal cell adhesion molecule (Lutheran blood group) [Source:RGD Symbol%3BAcc:68378]
rn6_v1_chr1_-_80221417_80221417	0.0489756	Gli3_Zic1	ENSRNOT00000072149|Fosb|ENSRNOG00000046667|FosB proto-oncogene%2C AP-1 transcription factor subunit [Source:RGD Symbol%3BAcc:1308198]
rn6_v1_chr12_+_7454884_7454884	0.0476514	Gli3_Zic1	ENSRNOT00000077328|LOC100910196|ENSRNOG00000047618|katanin p60 ATPase-containing subunit A-like 1-like [Source:RGD Symbol%3BAcc:6499844]
rn6_v1_chr19_+_46761570_46761570	0.0469255	Gli3_Zic1	ENSRNOT00000058779|Wwox|ENSRNOG00000012030|WW domain-containing oxidoreductase [Source:RGD Symbol%3BAcc:1309927]
rn6_v1_chr10_-_105628091_105628091	0.0461166	Gli3_Zic1	ENSRNOT00000016067|Cygb|ENSRNOG00000011541|cytoglobin [Source:RGD Symbol%3BAcc:69415]
rn6_v1_chrX_-_63809861_63809861	0.0458827	Gli3_Zic1	ENSRNOT00000009870|Maged1|ENSRNOG00000006756|MAGE family member D1 [Source:RGD Symbol%3BAcc:70898]
rn6_v1_chr4_-_170932618_170932618	0.0457473	Gli3_Zic1	ENSRNOT00000007779|Arhgdib|ENSRNOG00000005809|Rho GDP dissociation inhibitor beta [Source:RGD Symbol%3BAcc:1305383]
rn6_v1_chr1_+_72636959_72636959	0.0449555	Gli3_Zic1	ENSRNOT00000023489|Il11|ENSRNOG00000017386|interleukin 11 [Source:RGD Symbol%3BAcc:621475]
rn6_v1_chr11_+_87204175_87204175	0.0446084	Gli3_Zic1	ENSRNOT00000000306|Slc25a1|ENSRNOG00000038001|solute carrier family 25 member 1 [Source:RGD Symbol%3BAcc:3703]
rn6_v1_chr2_+_225645568_225645568	0.0445769	Gli3_Zic1	ENSRNOT00000017878|Abca4|ENSRNOG00000012892|ATP binding cassette subfamily A member 4 [Source:RGD Symbol%3BAcc:1309445]
rn6_v1_chr10_-_90265017_90265017	0.0441936	Gli3_Zic1	ENSRNOT00000064283|Ubtf|ENSRNOG00000020937|upstream binding transcription factor%2C RNA polymerase I [Source:RGD Symbol%3BAcc:3927]	ENSRNOT00000048418|Ubtf|ENSRNOG00000020937|upstream binding transcription factor%2C RNA polymerase I [Source:RGD Symbol%3BAcc:3927]
rn6_v1_chr17_+_82066152_82066152	0.0424624	Gli3_Zic1	ENSRNOT00000083034|Arl5b|ENSRNOG00000018714|ADP-ribosylation factor like GTPase 5B [Source:RGD Symbol%3BAcc:1305569]
rn6_v1_chr19_+_25946979_25946979	0.042425	Gli3_Zic1	ENSRNOT00000004027|Gadd45gip1|ENSRNOG00000003011|GADD45G interacting protein 1 [Source:RGD Symbol%3BAcc:1309249]
rn6_v1_chr13_-_35511020_35511020	0.0422298	Gli3_Zic1	ENSRNOT00000003413|Ralb|ENSRNOG00000002440|RAS like proto-oncogene B [Source:RGD Symbol%3BAcc:619852]
rn6_v1_chr7_-_140770647_140770647	0.0419913	Gli3_Zic1	ENSRNOT00000081784|C1ql4|ENSRNOG00000060020|complement C1q like 4 [Source:RGD Symbol%3BAcc:1565968]
rn6_v1_chr1_+_222519615_222519615	0.0418843	Gli3_Zic1	ENSRNOT00000083585|Rcor2|ENSRNOG00000060849|REST corepressor 2 [Source:RGD Symbol%3BAcc:1359467]
rn6_v1_chr1_+_82480195_82480195	0.0418202	Gli3_Zic1	ENSRNOT00000028051|Tgfb1|ENSRNOG00000020652|transforming growth factor%2C beta 1 [Source:RGD Symbol%3BAcc:69051]
rn6_v1_chr1_-_170397191_170397191	0.0415347	Gli3_Zic1	ENSRNOT00000090181|Apbb1|ENSRNOG00000018020|amyloid beta precursor protein binding family B member 1 [Source:RGD Symbol%3BAcc:2122]
rn6_v1_chr11_+_81796891_81796891	0.0414444	Gli3_Zic1	ENSRNOT00000058402|Crygs|ENSRNOG00000038355|crystallin%2C gamma S [Source:RGD Symbol%3BAcc:1587483]
rn6_v1_chr3_+_2642531_2642531	0.0413911	Gli3_Zic1	ENSRNOT00000081798|Fut7|ENSRNOG00000014156|fucosyltransferase 7 [Source:RGD Symbol%3BAcc:735019]
rn6_v1_chr5_+_126164674_126164674	0.0404107	Gli3_Zic1	ENSRNOT00000009402|Dhcr24|ENSRNOG00000006787|24-dehydrocholesterol reductase [Source:RGD Symbol%3BAcc:1306529]
rn6_v1_chr1_-_84986581_84986581	0.0401309	Gli3_Zic1	ENSRNOT00000025819|Psmc4|ENSRNOG00000018994|proteasome 26S subunit%2C ATPase 4 [Source:RGD Symbol%3BAcc:621102]
rn6_v1_chr18_+_29110242_29110242	0.0397066	Gli3_Zic1	ENSRNOT00000025756|Pura|ENSRNOG00000019062|purine rich element binding protein A [Source:RGD Symbol%3BAcc:1308543]
rn6_v1_chr1_-_80615525_80615525	0.0394437	Gli3_Zic1	ENSRNOT00000091574|Apoe|ENSRNOG00000018454|apolipoprotein E [Source:RGD Symbol%3BAcc:2138]
rn6_v1_chr1_-_80615704_80615704	0.0392402	Gli3_Zic1	ENSRNOT00000041891|Apoe|ENSRNOG00000018454|apolipoprotein E [Source:RGD Symbol%3BAcc:2138]
rn6_v1_chr10_-_88842233_88842233	0.0381166	Gli3_Zic1	ENSRNOT00000026760|Stat3|ENSRNOG00000019742|signal transducer and activator of transcription 3 [Source:RGD Symbol%3BAcc:3772]
rn6_v1_chr10_+_105156632_105156632	0.0374841	Gli3_Zic1	ENSRNOT00000086288|Galr2|ENSRNOG00000061733|galanin receptor 2 [Source:RGD Symbol%3BAcc:2657]
rn6_v1_chr9_-_81565416_81565416	0.0368235	Gli3_Zic1	ENSRNOT00000083582|Aamp|ENSRNOG00000014399|angio-associated%2C migratory cell protein [Source:RGD Symbol%3BAcc:1306281]
rn6_v1_chr12_+_23752844_23752844	0.0367146	Gli3_Zic1	ENSRNOT00000001953|Ssc4d|ENSRNOG00000001435|scavenger receptor cysteine rich family member with 4 domains [Source:RGD Symbol%3BAcc:1306970]
rn6_v1_chrX_-_15553720_15553720	0.0360927	Gli3_Zic1	ENSRNOT00000012646|Gripap1|ENSRNOG00000009071|GRIP1 associated protein 1 [Source:RGD Symbol%3BAcc:621249]
rn6_v1_chr8_+_118525682_118525682	0.0355511	Gli3_Zic1	ENSRNOT00000028288|Elp6|ENSRNOG00000020847|elongator acetyltransferase complex subunit 6 [Source:RGD Symbol%3BAcc:1305478]
rn6_v1_chr10_+_59566223_59566268	0.0348721	Gli3_Zic1	ENSRNOT00000024068|P2rx1|ENSRNOG00000017606|purinergic receptor P2X 1 [Source:RGD Symbol%3BAcc:3240]	ENSRNOT00000088245|P2rx1|ENSRNOG00000017606|purinergic receptor P2X 1 [Source:RGD Symbol%3BAcc:3240]
rn6_v1_chr1_-_212548730_212548730	0.0347369	Gli3_Zic1	ENSRNOT00000089729|Caly|ENSRNOG00000018337|calcyon neuron-specific vesicular protein [Source:RGD Symbol%3BAcc:621719]
rn6_v1_chr10_+_91217079_91217079	0.0346911	Gli3_Zic1	ENSRNOT00000004218|Hexim2|ENSRNOG00000021287|hexamethylene bis-acetamide inducible 2 [Source:RGD Symbol%3BAcc:1311635]
rn6_v1_chr4_-_117631716_117631716	0.0336868	Gli3_Zic1	ENSRNOT00000057475|LOC103690006|ENSRNOG00000045539|RNA/RNP complex-1-interacting phosphatase [Source:RGD Symbol%3BAcc:9168966]
rn6_v1_chr7_-_11777503_11777503	0.0334214	Gli3_Zic1	ENSRNOT00000026220|Amh|ENSRNOG00000019377|anti-Mullerian hormone [Source:RGD Symbol%3BAcc:2108]
rn6_v1_chr5_-_147953093_147953093	0.033081	Gli3_Zic1	ENSRNOT00000075270|Khdrbs1|ENSRNOG00000046794|KH RNA binding domain containing%2C signal transduction associated 1 [Source:RGD Symbol%3BAcc:621459]
rn6_v1_chr7_-_58286770_58286770	0.0330719	Gli3_Zic1	ENSRNOT00000005258|Rab21|ENSRNOG00000003923|RAB21%2C member RAS oncogene family [Source:RGD Symbol%3BAcc:1303150]
rn6_v1_chr9_-_16611899_16611899	0.0316209	Gli3_Zic1	ENSRNOT00000089168|Mea1|ENSRNOG00000017144|male-enhanced antigen 1 [Source:RGD Symbol%3BAcc:1597751]
rn6_v1_chr5_+_172273459_172273459	0.0316052	Gli3_Zic1	ENSRNOT00000017957|Mmel1|ENSRNOG00000012593|membrane metallo-endopeptidase-like 1 [Source:RGD Symbol%3BAcc:1309299]
rn6_v1_chr12_+_47992091_47992091	0.0313741	Gli3_Zic1	ENSRNOT00000073019|Kctd10|ENSRNOG00000047896|potassium channel tetramerization domain containing 10 [Source:RGD Symbol%3BAcc:1591979]
rn6_v1_chr7_-_119441487_119441487	0.0306702	Gli3_Zic1	ENSRNOT00000067635|Pvalb|ENSRNOG00000006471|parvalbumin [Source:RGD Symbol%3BAcc:3457]
rn6_v1_chr11_+_73738433_73738433	0.0304164	Gli3_Zic1	ENSRNOT00000002353|Tmem44|ENSRNOG00000001726|transmembrane protein 44 [Source:RGD Symbol%3BAcc:1563737]
rn6_v1_chr16_+_7212488_7212488	0.0303982	Gli3_Zic1	ENSRNOT00000024840|Nt5dc2|ENSRNOG00000018358|5'-nucleotidase domain containing 2 [Source:RGD Symbol%3BAcc:1305524]
rn6_v1_chr7_-_12741296_12741296	0.029791	Gli3_Zic1	ENSRNOT00000060648|Arhgap45|ENSRNOG00000013220|Rho GTPase activating protein 45 [Source:RGD Symbol%3BAcc:1308662]
rn6_v1_chr10_+_105156822_105156822	0.0297799	Gli3_Zic1	ENSRNOT00000012523|Galr2|ENSRNOG00000061733|galanin receptor 2 [Source:RGD Symbol%3BAcc:2657]
rn6_v1_chr1_-_80580662_80580662	0.0297305	Gli3_Zic1	ENSRNOT00000024779|Clptm1|ENSRNOG00000018255|cleft lip and palate associated transmembrane protein 1 [Source:RGD Symbol%3BAcc:1310959]
rn6_v1_chr19_-_26141111_26141111	0.0295295	Gli3_Zic1	ENSRNOT00000067518|Asna1|ENSRNOG00000003747|arsA arsenite transporter%2C ATP-binding%2C homolog 1 (bacterial) [Source:RGD Symbol%3BAcc:1307906]
rn6_v1_chr5_-_58476251_58476251	0.029485	Gli3_Zic1	ENSRNOT00000013151|Stoml2|ENSRNOG00000009535|stomatin like 2 [Source:RGD Symbol%3BAcc:1308285]
rn6_v1_chrX_-_112328642_112328642	0.0289948	Gli3_Zic1	ENSRNOT00000083150|Psmd10|ENSRNOG00000057649|proteasome 26S subunit%2C non-ATPase 10 [Source:RGD Symbol%3BAcc:620350]
rn6_v1_chr20_-_45260119_45260119	0.0288781	Gli3_Zic1	ENSRNOT00000000718|Slc16a10|ENSRNOG00000000588|solute carrier family 16 member 10 [Source:RGD Symbol%3BAcc:69197]
rn6_v1_chr1_+_226687258_226687258	0.0284158	Gli3_Zic1	ENSRNOT00000079679|Vwce|ENSRNOG00000060269|von Willebrand factor C and EGF domains [Source:RGD Symbol%3BAcc:1309910]
rn6_v1_chr3_-_151224123_151224123	0.0280329	Gli3_Zic1	ENSRNOT00000026091|Trpc4ap|ENSRNOG00000019152|transient receptor potential cation channel%2C subfamily C%2C member 4 associated protein [Source:RGD Symbol%3BAcc:1309914]
rn6_v1_chr12_+_47218969_47219089	0.026646	Gli3_Zic1	ENSRNOT00000081343|Unc119b|ENSRNOG00000021725|unc-119 lipid binding chaperone B [Source:RGD Symbol%3BAcc:1309359]	ENSRNOT00000038395|Unc119b|ENSRNOG00000021725|unc-119 lipid binding chaperone B [Source:RGD Symbol%3BAcc:1309359]
rn6_v1_chr9_-_100930263_100930399	0.024892	Gli3_Zic1	ENSRNOT00000085029|Dtymk|ENSRNOG00000018904|deoxythymidylate kinase [Source:RGD Symbol%3BAcc:1309614]	ENSRNOT00000025644|Dtymk|ENSRNOG00000018904|deoxythymidylate kinase [Source:RGD Symbol%3BAcc:1309614]
rn6_v1_chr13_-_51076852_51076852	0.024496	Gli3_Zic1	ENSRNOT00000078993|Adora1|ENSRNOG00000003442|adenosine A1 receptor [Source:RGD Symbol%3BAcc:2048]
rn6_v1_chr8_+_67753279_67753279	0.0241913	Gli3_Zic1	ENSRNOT00000009716|Calml4|ENSRNOG00000038202|calmodulin-like 4 [Source:RGD Symbol%3BAcc:1583918]
rn6_v1_chr19_+_60017746_60017746	0.0241831	Gli3_Zic1	ENSRNOT00000042623|Pard3|ENSRNOG00000032437|par-3 family cell polarity regulator [Source:RGD Symbol%3BAcc:620374]
rn6_v1_chr11_+_75905443_75905443	0.0240193	Gli3_Zic1	ENSRNOT00000002650|Fgf12|ENSRNOG00000001931|fibroblast growth factor 12 [Source:RGD Symbol%3BAcc:620163]
rn6_v1_chr8_-_111965889_111965889	0.0238444	Gli3_Zic1	ENSRNOT00000032376|Bfsp2|ENSRNOG00000010899|beaded filament structural protein 2 [Source:RGD Symbol%3BAcc:1591927]
rn6_v1_chr18_+_58270410_58270410	0.023835	Gli3_Zic1	ENSRNOT00000067554|Apcdd1|ENSRNOG00000043304|APC down-regulated 1 [Source:RGD Symbol%3BAcc:1589962]
rn6_v1_chr7_-_2712723_2712723	0.0233368	Gli3_Zic1	ENSRNOT00000004363|Il23a|ENSRNOG00000003254|interleukin 23 subunit alpha [Source:RGD Symbol%3BAcc:620873]
rn6_v1_chr13_-_73638073_73638073	0.0229017	Gli3_Zic1	ENSRNOT00000005195|Cep350|ENSRNOG00000003882|centrosomal protein 350 [Source:RGD Symbol%3BAcc:621162]
rn6_v1_chr8_-_75995371_75995371	0.0227341	Gli3_Zic1	ENSRNOT00000014014|Foxb1|ENSRNOG00000010547|forkhead box B1 [Source:RGD Symbol%3BAcc:1305217]
rn6_v1_chr2_+_227095487_227095487	0.0223689	Gli3_Zic1	ENSRNOT00000019647|LOC691807|ENSRNOG00000014654|hypothetical protein LOC691807 [Source:RGD Symbol%3BAcc:1594660]
rn6_v1_chr6_+_28663602_28663602	0.0222115	Gli3_Zic1	ENSRNOT00000005402|Ptrhd1|ENSRNOG00000004059|peptidyl-tRNA hydrolase domain containing 1 [Source:RGD Symbol%3BAcc:1561792]
rn6_v1_chr10_+_65507364_65507364	0.0219449	Gli3_Zic1	ENSRNOT00000016297|Sdf2|ENSRNOG00000012121|stromal cell derived factor 2 [Source:RGD Symbol%3BAcc:1307274]
rn6_v1_chr10_-_11901765_11901785	0.0217316	Gli3_Zic1	ENSRNOT00000009936|Naa60|ENSRNOG00000007280|N(alpha)-acetyltransferase 60%2C NatF catalytic subunit [Source:RGD Symbol%3BAcc:1308915]	ENSRNOT00000075238|Naa60|ENSRNOG00000007280|N(alpha)-acetyltransferase 60%2C NatF catalytic subunit [Source:RGD Symbol%3BAcc:1308915]
rn6_v1_chr1_+_266255797_266255797	0.0212484	Gli3_Zic1	ENSRNOT00000027047|Trim8|ENSRNOG00000019968|tripartite motif-containing 8 [Source:RGD Symbol%3BAcc:1585223]
rn6_v1_chrX_+_119030419_119030419	0.0207731	Gli3_Zic1	ENSRNOT00000060168|Pls3|ENSRNOG00000027520|plastin 3 [Source:RGD Symbol%3BAcc:621409]
rn6_v1_chr9_-_16612136_16612136	0.0206462	Gli3_Zic1	ENSRNOT00000023495|Mea1|ENSRNOG00000017144|male-enhanced antigen 1 [Source:RGD Symbol%3BAcc:1597751]
rn6_v1_chr2_+_187512164_187512164	0.0205898	Gli3_Zic1	ENSRNOT00000051394|Mef2d|ENSRNOG00000031778|myocyte enhancer factor 2D [Source:RGD Symbol%3BAcc:621489]
rn6_v1_chr20_+_5125679_5125679	0.0205843	Gli3_Zic1	ENSRNOT00000060832|Bag6|ENSRNOG00000000851|BCL2-associated athanogene 6 [Source:RGD Symbol%3BAcc:71064]
rn6_v1_chr9_-_10734073_10734073	0.0204555	Gli3_Zic1	ENSRNOT00000071199|Kdm4b|ENSRNOG00000049221|lysine demethylase 4B [Source:RGD Symbol%3BAcc:1588576]
rn6_v1_chr8_+_50563047_50563047	0.0201498	Gli3_Zic1	ENSRNOT00000025149|Zfp259|ENSRNOG00000018481|zinc finger protein 259 [Source:RGD Symbol%3BAcc:1562173]
rn6_v1_chr7_+_70283710_70283710	0.0200519	Gli3_Zic1	ENSRNOT00000075371|Ctdsp2|ENSRNOG00000047598|CTD small phosphatase 2 [Source:RGD Symbol%3BAcc:2319209]
rn6_v1_chr1_-_220467159_220467159	0.0200429	Gli3_Zic1	ENSRNOT00000075365|Tmem151a|ENSRNOG00000049951|transmembrane protein 151A [Source:RGD Symbol%3BAcc:1310680]
rn6_v1_chr2_-_187863349_187863349	0.0199105	Gli3_Zic1	ENSRNOT00000084455|Lmna|ENSRNOG00000019638|lamin A/C [Source:RGD Symbol%3BAcc:620456]
rn6_v1_chr3_-_173953684_173953684	0.0198164	Gli3_Zic1	ENSRNOT00000090468|Ppp1r3d|ENSRNOG00000053869|protein phosphatase 1%2C regulatory subunit 3D [Source:RGD Symbol%3BAcc:1586306]
rn6_v1_chr17_-_84614228_84614228	0.01964	Gli3_Zic1	ENSRNOT00000043042|AABR07028748.1|ENSRNOG00000030638|
rn6_v1_chr5_-_57896475_57896475	0.0193509	Gli3_Zic1	ENSRNOT00000017903|RGD1561916|ENSRNOG00000013320|similar to testes development-related NYD-SP22 isoform 1 [Source:RGD Symbol%3BAcc:1561916]
rn6_v1_chr4_+_61924013_61924013	0.0191703	Gli3_Zic1	ENSRNOT00000090717|Bpgm|ENSRNOG00000010133|bisphosphoglycerate mutase [Source:RGD Symbol%3BAcc:735018]
rn6_v1_chr12_+_28212333_28212333	0.0191664	Gli3_Zic1	ENSRNOT00000001182|Auts2|ENSRNOG00000000885|autism susceptibility candidate 2 [Source:RGD Symbol%3BAcc:2323959]
rn6_v1_chr5_-_144221263_144221263	0.0191605	Gli3_Zic1	ENSRNOT00000013570|Thrap3|ENSRNOG00000009977|thyroid hormone receptor associated protein 3 [Source:RGD Symbol%3BAcc:1306129]
rn6_v1_chr20_-_10968432_10968432	0.0188678	Gli3_Zic1	ENSRNOT00000001593|Cstb|ENSRNOG00000001201|cystatin B [Source:RGD Symbol%3BAcc:2435]
rn6_v1_chr1_+_221099998_221099998	0.0186537	Gli3_Zic1	ENSRNOT00000028262|Ltbp3|ENSRNOG00000020813|latent transforming growth factor beta binding protein 3 [Source:RGD Symbol%3BAcc:62057]
rn6_v1_chr1_+_79899155_79899155	0.0184813	Gli3_Zic1	ENSRNOT00000078503|Mypop|ENSRNOG00000014132|Myb-related transcription factor%2C partner of profilin [Source:RGD Symbol%3BAcc:1565160]
rn6_v1_chr20_+_5125349_5125411	0.0182857	Gli3_Zic1	ENSRNOT00000085598|Bag6|ENSRNOG00000000851|BCL2-associated athanogene 6 [Source:RGD Symbol%3BAcc:71064]	ENSRNOT00000001129|Bag6|ENSRNOG00000000851|BCL2-associated athanogene 6 [Source:RGD Symbol%3BAcc:71064]
rn6_v1_chr2_+_12102487_12102598	0.018102	Gli3_Zic1	ENSRNOT00000089209|LOC100912538|ENSRNOG00000048563|centrin-3-like [Source:RGD Symbol%3BAcc:6486167]	ENSRNOT00000072155|LOC100912538|ENSRNOG00000048563|centrin-3-like [Source:RGD Symbol%3BAcc:6486167]
rn6_v1_chr11_+_82466071_82466071	0.0177108	Gli3_Zic1	ENSRNOT00000036958|Igf2bp2|ENSRNOG00000025946|insulin-like growth factor 2 mRNA binding protein 2 [Source:RGD Symbol%3BAcc:1305614]
rn6_v1_chr8_-_23084879_23084879	0.0176451	Gli3_Zic1	ENSRNOT00000018874|Zfp653|ENSRNOG00000014065|zinc finger protein 653 [Source:RGD Symbol%3BAcc:1308754]
rn6_v1_chr10_+_85301875_85301875	0.0175688	Gli3_Zic1	ENSRNOT00000080935|Socs7|ENSRNOG00000059008|suppressor of cytokine signaling 7 [Source:RGD Symbol%3BAcc:1307720]
rn6_v1_chr2_+_195719543_195719543	0.0173682	Gli3_Zic1	ENSRNOT00000028324|Celf3|ENSRNOG00000020875|CUGBP%2C Elav-like family member 3 [Source:RGD Symbol%3BAcc:1563168]
rn6_v1_chr5_+_63781801_63781801	0.0171797	Gli3_Zic1	ENSRNOT00000008302|Nr4a3|ENSRNOG00000005964|nuclear receptor subfamily 4%2C group A%2C member 3 [Source:RGD Symbol%3BAcc:61882]
rn6_v1_chr5_-_40867023_40867023	0.0168579	Gli3_Zic1	ENSRNOT00000011576|Manea|ENSRNOG00000008626|mannosidase%2C endo-alpha [Source:RGD Symbol%3BAcc:620327]
rn6_v1_chr12_+_2534212_2534212	0.016732	Gli3_Zic1	ENSRNOT00000001399|Ctxn1|ENSRNOG00000001057|cortexin 1 [Source:RGD Symbol%3BAcc:2449]
rn6_v1_chr4_+_6931495_6931495	0.016645	Gli3_Zic1	ENSRNOT00000079770|Wdr86|ENSRNOG00000025735|WD repeat domain 86 [Source:RGD Symbol%3BAcc:1566180]
rn6_v1_chr3_+_11593655_11593655	0.0164328	Gli3_Zic1	ENSRNOT00000074122|Pip5kl1|ENSRNOG00000048676|phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:RGD Symbol%3BAcc:1597527]
rn6_v1_chr20_+_3992496_3992496	0.0163609	Gli3_Zic1	ENSRNOT00000082047|Psmb8|ENSRNOG00000000456|proteasome subunit beta 8 [Source:RGD Symbol%3BAcc:3426]
rn6_v1_chr19_-_54245855_54245855	0.0161156	Gli3_Zic1	ENSRNOT00000023855|Emc8|ENSRNOG00000017654|ER membrane protein complex subunit 8 [Source:RGD Symbol%3BAcc:1311219]
rn6_v1_chr17_+_70586394_70586394	0.0160033	Gli3_Zic1	ENSRNOT00000025550|Rbm17|ENSRNOG00000018767|RNA binding motif protein 17 [Source:RGD Symbol%3BAcc:1311208]
rn6_v1_chr5_-_59085676_59085676	0.0159713	Gli3_Zic1	ENSRNOT00000068105|Msmp|ENSRNOG00000043023|microseminoprotein%2C prostate associated [Source:MGI Symbol%3BAcc:MGI:3652339]
rn6_v1_chrX_+_6791136_6791136	0.0158267	Gli3_Zic1	ENSRNOT00000003984|LOC100909913|ENSRNOG00000002960|norrin-like [Source:RGD Symbol%3BAcc:6500886]
rn6_v1_chr4_-_7311807_7311878	0.0155091	Gli3_Zic1	ENSRNOT00000012222|Abcb8|ENSRNOG00000008557|ATP binding cassette subfamily B member 8 [Source:RGD Symbol%3BAcc:1307655]	ENSRNOT00000089817|Abcb8|ENSRNOG00000008557|ATP binding cassette subfamily B member 8 [Source:RGD Symbol%3BAcc:1307655]
rn6_v1_chr7_+_11677340_11677340	0.0155053	Gli3_Zic1	ENSRNOT00000026648|Timm13|ENSRNOG00000019682|translocase of inner mitochondrial membrane 13 [Source:RGD Symbol%3BAcc:628845]
rn6_v1_chr12_-_43940798_43940798	0.0154131	Gli3_Zic1	ENSRNOT00000001485|RGD1562310|ENSRNOG00000001123|similar to hypothetical protein FLJ21415 [Source:RGD Symbol%3BAcc:1562310]
rn6_v1_chr9_-_99821954_99821954	0.0147949	Gli3_Zic1	ENSRNOT00000090382|Otos|ENSRNOG00000016567|otospiralin [Source:RGD Symbol%3BAcc:708465]	ENSRNOT00000022220|Otos|ENSRNOG00000016567|otospiralin [Source:RGD Symbol%3BAcc:708465]
rn6_v1_chr1_-_183630695_183630695	0.0147361	Gli3_Zic1	ENSRNOT00000036330|AABR07005506.1|ENSRNOG00000025122|
rn6_v1_chr3_+_72447537_72447537	0.0144052	Gli3_Zic1	ENSRNOT00000091901|Ssrp1|ENSRNOG00000008825|structure specific recognition protein 1 [Source:RGD Symbol%3BAcc:621143]
rn6_v1_chr10_+_86669233_86669233	0.0143854	Gli3_Zic1	ENSRNOT00000012340|Thra|ENSRNOG00000009066|thyroid hormone receptor alpha [Source:RGD Symbol%3BAcc:3857]
rn6_v1_chr3_-_7632345_7632345	0.0138484	Gli3_Zic1	ENSRNOT00000049889|Cfap77|ENSRNOG00000028805|cilia and flagella associated protein 77 [Source:RGD Symbol%3BAcc:1564114]
rn6_v1_chr16_+_61758917_61758917	0.0138239	Gli3_Zic1	ENSRNOT00000084858|Leprotl1|ENSRNOG00000012601|leptin receptor overlapping transcript-like 1 [Source:RGD Symbol%3BAcc:1307168]
rn6_v1_chr5_-_172307431_172307431	0.0134309	Gli3_Zic1	ENSRNOT00000018453|Fam213b|ENSRNOG00000013468|family with sequence similarity 213%2C member B [Source:RGD Symbol%3BAcc:1308251]
rn6_v1_chr19_+_53055745_53055745	0.0132943	Gli3_Zic1	ENSRNOT00000074430|Foxl1|ENSRNOG00000047125|forkhead box L1 [Source:RGD Symbol%3BAcc:1584212]
rn6_v1_chr12_-_21989339_21989339	0.013112	Gli3_Zic1	ENSRNOT00000074735|Ppp1r35|ENSRNOG00000050881|protein phosphatase 1%2C regulatory subunit 35 [Source:RGD Symbol%3BAcc:1584367]
rn6_v1_chr3_+_5624506_5624506	0.0128217	Gli3_Zic1	ENSRNOT00000036995|Adamtsl2|ENSRNOG00000027742|ADAMTS-like 2 [Source:RGD Symbol%3BAcc:1305459]
rn6_v1_chr3_+_8450612_8450612	0.0127957	Gli3_Zic1	ENSRNOT00000040457|Odf2|ENSRNOG00000014584|outer dense fiber of sperm tails 2 [Source:RGD Symbol%3BAcc:3229]
rn6_v1_chr1_+_144070754_144070754	0.0126016	Gli3_Zic1	ENSRNOT00000079989|Sh3gl3|ENSRNOG00000019776|SH3 domain-containing GRB2-like 3 [Source:RGD Symbol%3BAcc:620578]
rn6_v1_chrX_+_15610230_15610230	0.012248	Gli3_Zic1	ENSRNOT00000012880|Ccdc120|ENSRNOG00000009687|coiled-coil domain containing 120 [Source:RGD Symbol%3BAcc:1561596]
rn6_v1_chr13_+_52889737_52889737	0.0121761	Gli3_Zic1	ENSRNOT00000074366|Cacna1s|ENSRNOG00000046231|calcium voltage-gated channel subunit alpha1 S [Source:RGD Symbol%3BAcc:70983]
rn6_v1_chr15_+_108608204_108608204	0.0121248	Gli3_Zic1	ENSRNOT00000018918|Clybl|ENSRNOG00000014075|citrate lyase beta like [Source:RGD Symbol%3BAcc:1304615]
rn6_v1_chr3_+_14482388_14482388	0.0117016	Gli3_Zic1	ENSRNOT00000025857|Gsn|ENSRNOG00000018991|gelsolin [Source:RGD Symbol%3BAcc:1303089]
rn6_v1_chr9_+_100830250_100830250	0.0115424	Gli3_Zic1	ENSRNOT00000024526|Bok|ENSRNOG00000018214|BOK%2C BCL2 family apoptosis regulator [Source:RGD Symbol%3BAcc:70984]
rn6_v1_chr7_+_133089166_133089166	0.0110755	Gli3_Zic1	ENSRNOT00000085280|AC096792.1|ENSRNOG00000054624|
rn6_v1_chr17_+_6683152_6683152	0.011	Gli3_Zic1	ENSRNOT00000061249|RGD1311345|ENSRNOG00000019232|similar to CG9752-PA [Source:RGD Symbol%3BAcc:1311345]
rn6_v1_chr9_-_61690956_61690956	0.0109004	Gli3_Zic1	ENSRNOT00000066589|Hspd1|ENSRNOG00000014525|heat shock protein family D member 1 [Source:RGD Symbol%3BAcc:621314]
rn6_v1_chr18_+_73157973_73157973	0.010579	Gli3_Zic1	ENSRNOT00000031993|Skor2|ENSRNOG00000018006|SKI family transcriptional corepressor 2 [Source:RGD Symbol%3BAcc:1598071]
rn6_v1_chr13_-_72744295_72744303	0.0105121	Gli3_Zic1	ENSRNOT00000093366|Ier5|ENSRNOG00000059406|immediate early response 5 [Source:RGD Symbol%3BAcc:69252]	ENSRNOT00000077157|Ier5|ENSRNOG00000059406|immediate early response 5 [Source:RGD Symbol%3BAcc:69252]
rn6_v1_chr1_+_198932870_198932870	0.0102765	Gli3_Zic1	ENSRNOT00000055003|Fbrs|ENSRNOG00000042728|fibrosin [Source:RGD Symbol%3BAcc:1594591]
rn6_v1_chr1_+_101502987_101502987	0.0101671	Gli3_Zic1	ENSRNOT00000085005|Tulp2|ENSRNOG00000020927|tubby-like protein 2 [Source:RGD Symbol%3BAcc:1310551]
rn6_v1_chr19_-_56633633_56633633	0.0100653	Gli3_Zic1	ENSRNOT00000023911|Ccsap|ENSRNOG00000017690|centriole%2C cilia and spindle-associated protein [Source:RGD Symbol%3BAcc:1563235]
rn6_v1_chrX_-_105390580_105390580	0.0100089	Gli3_Zic1	ENSRNOT00000077547|Btk|ENSRNOG00000052407|Bruton tyrosine kinase [Source:RGD Symbol%3BAcc:1359683]
rn6_v1_chr19_+_25526751_25526751	0.00945951	Gli3_Zic1	ENSRNOT00000083448|Cacna1a|ENSRNOG00000052707|calcium voltage-gated channel subunit alpha1 A [Source:RGD Symbol%3BAcc:2244]
rn6_v1_chr4_+_62457694_62457694	0.00931378	Gli3_Zic1	ENSRNOT00000014093|Stra8|ENSRNOG00000010573|stimulated by retinoic acid 8 [Source:RGD Symbol%3BAcc:1562852]
rn6_v1_chr7_-_114305896_114305896	0.00926127	Gli3_Zic1	ENSRNOT00000067327|Trappc9|ENSRNOG00000027569|trafficking protein particle complex 9 [Source:RGD Symbol%3BAcc:1309461]	ENSRNOT00000038172|Trappc9|ENSRNOG00000027569|trafficking protein particle complex 9 [Source:RGD Symbol%3BAcc:1309461]
rn6_v1_chr5_-_65073012_65073012	0.00845627	Gli3_Zic1	ENSRNOT00000007957|Grin3a|ENSRNOG00000005723|glutamate ionotropic receptor NMDA type subunit 3A [Source:RGD Symbol%3BAcc:621704]
rn6_v1_chr20_+_21316826_21316826	0.00824399	Gli3_Zic1	ENSRNOT00000000785|RGD1306739|ENSRNOG00000000634|similar to RIKEN cDNA 1700040L02 [Source:RGD Symbol%3BAcc:1306739]
rn6_v1_chr16_-_10603850_10603850	0.00802921	Gli3_Zic1	ENSRNOT00000087737|Fam35a|ENSRNOG00000059057|family with sequence similarity 35%2C member A [Source:RGD Symbol%3BAcc:1565067]
rn6_v1_chr2_+_248715281_248715281	0.00801945	Gli3_Zic1	ENSRNOT00000089648|Gtf2b|ENSRNOG00000011135|general transcription factor IIB [Source:RGD Symbol%3BAcc:619735]
rn6_v1_chr16_-_7007051_7007051	0.00789739	Gli3_Zic1	ENSRNOT00000023984|Itih3|ENSRNOG00000017689|inter-alpha trypsin inhibitor%2C heavy chain 3 [Source:RGD Symbol%3BAcc:620633]
rn6_v1_chr11_+_61605937_61606006	0.00783172	Gli3_Zic1	ENSRNOT00000093455|Gramd1c|ENSRNOG00000053406|GRAM domain containing 1C [Source:RGD Symbol%3BAcc:1305433]	ENSRNOT00000093242|Gramd1c|ENSRNOG00000053406|GRAM domain containing 1C [Source:RGD Symbol%3BAcc:1305433]
rn6_v1_chr11_+_87435185_87435185	0.00777428	Gli3_Zic1	ENSRNOT00000002558|P2rx6|ENSRNOG00000001873|purinergic receptor P2X 6 [Source:RGD Symbol%3BAcc:3243]
rn6_v1_chr18_+_3995921_3995921	0.00765206	Gli3_Zic1	ENSRNOT00000091424|Ttc39c|ENSRNOG00000050949|tetratricopeptide repeat domain 39C [Source:RGD Symbol%3BAcc:1585423]
rn6_v1_chr8_+_55178289_55178289	0.00722849	Gli3_Zic1	ENSRNOT00000059127|Cryab|ENSRNOG00000010524|crystallin%2C alpha B [Source:RGD Symbol%3BAcc:2414]
rn6_v1_chr17_+_8135251_8135251	0.00705105	Gli3_Zic1	ENSRNOT00000016982|Trpc7|ENSRNOG00000012727|transient receptor potential cation channel%2C subfamily C%2C member 7 [Source:RGD Symbol%3BAcc:628820]
rn6_v1_chr5_+_77052484_77052508	0.00646419	Gli3_Zic1	ENSRNOT00000059419|Snx30|ENSRNOG00000017132|sorting nexin family member 30 [Source:RGD Symbol%3BAcc:1311367]	ENSRNOT00000087254|Snx30|ENSRNOG00000017132|sorting nexin family member 30 [Source:RGD Symbol%3BAcc:1311367]
rn6_v1_chr1_-_124039196_124039196	0.0062427	Gli3_Zic1	ENSRNOT00000051883|Chrna7|ENSRNOG00000010853|cholinergic receptor nicotinic alpha 7 subunit [Source:RGD Symbol%3BAcc:2348]
rn6_v1_chr16_-_83132785_83132785	0.00602865	Gli3_Zic1	ENSRNOT00000043449|Arhgef7|ENSRNOG00000012934|Rho guanine nucleotide exchange factor 7 [Source:RGD Symbol%3BAcc:620624]
rn6_v1_chr16_-_36373546_36373546	0.00585265	Gli3_Zic1	ENSRNOT00000079552|Hand2|ENSRNOG00000060448|heart and neural crest derivatives expressed transcript 2 [Source:MGI Symbol%3BAcc:MGI:103580]
rn6_v1_chr3_+_146582752_146582752	0.00568679	Gli3_Zic1	ENSRNOT00000010157|Pygb|ENSRNOG00000007583|glycogen phosphorylase B [Source:RGD Symbol%3BAcc:3460]
rn6_v1_chr6_+_96871625_96871625	0.00568169	Gli3_Zic1	ENSRNOT00000012361|Snapc1|ENSRNOG00000009296|small nuclear RNA activating complex%2C polypeptide 1 [Source:RGD Symbol%3BAcc:1304671]
rn6_v1_chr8_-_59239954_59239954	0.00559948	Gli3_Zic1	ENSRNOT00000016104|Acsbg1|ENSRNOG00000011381|acyl-CoA synthetase bubblegum family member 1 [Source:RGD Symbol%3BAcc:708557]
rn6_v1_chr2_+_208530864_208530864	0.00543634	Gli3_Zic1	ENSRNOT00000021236|Adora3|ENSRNOG00000015788|adenosine A3 receptor [Source:RGD Symbol%3BAcc:2051]
rn6_v1_chr12_-_21728678_21728678	0.00509766	Gli3_Zic1	ENSRNOT00000035372|LOC100910581|ENSRNOG00000024505|protein phosphatase 1 regulatory subunit 35-like [Source:RGD Symbol%3BAcc:6497600]
rn6_v1_chr13_+_52147555_52147555	0.00506691	Gli3_Zic1	ENSRNOT00000084766|Lmod1|ENSRNOG00000051548|leiomodin 1 [Source:RGD Symbol%3BAcc:1307236]
rn6_v1_chr10_+_69737328_69737422	0.00492943	Gli3_Zic1	ENSRNOT00000055999|Tmem132e|ENSRNOG00000007455|transmembrane protein 132E [Source:RGD Symbol%3BAcc:1565522]	ENSRNOT00000076773|Tmem132e|ENSRNOG00000007455|transmembrane protein 132E [Source:RGD Symbol%3BAcc:1565522]
rn6_v1_chr19_+_24786628_24786628	0.00481035	Gli3_Zic1	ENSRNOT00000005374|Gipc1|ENSRNOG00000003864|GIPC PDZ domain containing family%2C member 1 [Source:RGD Symbol%3BAcc:68338]
rn6_v1_chr10_-_49009156_49009156	0.00473498	Gli3_Zic1	ENSRNOT00000072970|Mapk7|ENSRNOG00000047907|mitogen-activated protein kinase 7 [Source:RGD Symbol%3BAcc:621505]
rn6_v1_chr2_-_188553289_188553289	0.00445809	Gli3_Zic1	ENSRNOT00000088822|Trim46|ENSRNOG00000055433|tripartite motif-containing 46 [Source:RGD Symbol%3BAcc:1305993]
rn6_v1_chr12_-_44999074_44999159	0.00437574	Gli3_Zic1	ENSRNOT00000079177|Vsig10|ENSRNOG00000022698|V-set and immunoglobulin domain containing 10 [Source:RGD Symbol%3BAcc:1565800]	ENSRNOT00000038293|Vsig10|ENSRNOG00000022698|V-set and immunoglobulin domain containing 10 [Source:RGD Symbol%3BAcc:1565800]
rn6_v1_chr3_+_146980923_146980923	0.0041956	Gli3_Zic1	ENSRNOT00000011654|Nsfl1c|ENSRNOG00000008604|NSFL1 cofactor [Source:RGD Symbol%3BAcc:619952]
rn6_v1_chr19_+_22281906_22281906	0.0040255	Gli3_Zic1	ENSRNOT00000021711|Itfg1|ENSRNOG00000015843|integrin alpha FG-GAP repeat containing 1 [Source:RGD Symbol%3BAcc:619898]
rn6_v1_chr11_-_79703736_79703736	0.00383882	Gli3_Zic1	ENSRNOT00000044279|Lpp|ENSRNOG00000031669|LIM domain containing preferred translocation partner in lipoma [Source:RGD Symbol%3BAcc:1310535]
rn6_v1_chr20_+_3830376_3830376	0.00374895	Gli3_Zic1	ENSRNOT00000085547|Col11a2|ENSRNOG00000000463|collagen type XI alpha 2 chain [Source:RGD Symbol%3BAcc:2373]
rn6_v1_chr10_+_46314639_46314639	0.00374621	Gli3_Zic1	ENSRNOT00000089724|Med9|ENSRNOG00000053961|mediator complex subunit 9 [Source:RGD Symbol%3BAcc:1563669]
rn6_v1_chr9_-_11108741_11108741	0.00340433	Gli3_Zic1	ENSRNOT00000072357|Ccdc94|ENSRNOG00000047456|coiled-coil domain containing 94 [Source:RGD Symbol%3BAcc:1589601]
rn6_v1_chr1_+_72635267_72635267	0.00315236	Gli3_Zic1	ENSRNOT00000090636|Il11|ENSRNOG00000017386|interleukin 11 [Source:RGD Symbol%3BAcc:621475]
rn6_v1_chr1_+_113034227_113034266	0.00313989	Gli3_Zic1	ENSRNOT00000081831|Gabrb3|ENSRNOG00000060599|gamma-aminobutyric acid type A receptor beta 3 subunit [Source:RGD Symbol%3BAcc:2651]	ENSRNOT00000077877|Gabrb3|ENSRNOG00000060599|gamma-aminobutyric acid type A receptor beta 3 subunit [Source:RGD Symbol%3BAcc:2651]	ENSRNOT00000077594|Gabrb3|ENSRNOG00000060599|gamma-aminobutyric acid type A receptor beta 3 subunit [Source:RGD Symbol%3BAcc:2651]
rn6_v1_chr3_-_2573387_2573387	0.00294062	Gli3_Zic1	ENSRNOT00000017271|Dpp7|ENSRNOG00000012640|dipeptidylpeptidase 7 [Source:RGD Symbol%3BAcc:71073]
rn6_v1_chr1_+_91363492_91363492	0.00254719	Gli3_Zic1	ENSRNOT00000014517|Cebpa|ENSRNOG00000010918|CCAAT/enhancer binding protein alpha [Source:RGD Symbol%3BAcc:2326]
rn6_v1_chr3_-_2431148_2431148	0.002294	Gli3_Zic1	ENSRNOT00000012978|Nelfb|ENSRNOG00000009377|negative elongation factor complex member B [Source:RGD Symbol%3BAcc:1307832]
rn6_v1_chr10_-_63240332_63240332	0.00221985	Gli3_Zic1	ENSRNOT00000005125|Blmh|ENSRNOG00000003563|bleomycin hydrolase [Source:RGD Symbol%3BAcc:1304668]
rn6_v1_chr13_-_51076165_51076165	0.00220284	Gli3_Zic1	ENSRNOT00000004602|Adora1|ENSRNOG00000003442|adenosine A1 receptor [Source:RGD Symbol%3BAcc:2048]
rn6_v1_chr1_-_198117547_198117547	0.0020364	Gli3_Zic1	ENSRNOT00000077226|Slx1b|ENSRNOG00000019369|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae) [Source:RGD Symbol%3BAcc:1311568]
rn6_v1_chr5_-_141430659_141430659	0.00195597	Gli3_Zic1	ENSRNOT00000034944|Akirin1|ENSRNOG00000026610|akirin 1 [Source:RGD Symbol%3BAcc:1585989]
rn6_v1_chr10_-_65507581_65507581	0.00193869	Gli3_Zic1	ENSRNOT00000016759|Supt6h|ENSRNOG00000012240|SPT6 homolog%2C histone chaperone [Source:RGD Symbol%3BAcc:1309290]
rn6_v1_chr5_-_74191167_74191167	0.00190519	Gli3_Zic1	ENSRNOT00000088169|Epb41l4b|ENSRNOG00000056550|erythrocyte membrane protein band 4.1 like 4B [Source:RGD Symbol%3BAcc:1562988]
rn6_v1_chr19_+_54245950_54245950	0.00140507	Gli3_Zic1	ENSRNOT00000024033|Cox4i1|ENSRNOG00000017817|cytochrome c oxidase subunit 4i1 [Source:RGD Symbol%3BAcc:68374]
rn6_v1_chr3_-_161212188_161212188	0.001308	Gli3_Zic1	ENSRNOT00000065751|Wfdc3|ENSRNOG00000042162|WAP four-disulfide core domain 3 [Source:RGD Symbol%3BAcc:1305295]
rn6_v1_chr1_-_85220237_85220237	0.00110858	Gli3_Zic1	ENSRNOT00000026907|Sycn|ENSRNOG00000019879|syncollin [Source:RGD Symbol%3BAcc:620862]
rn6_v1_chr4_-_151390263_151390263	0.00110148	Gli3_Zic1	ENSRNOT00000010238|Lrtm2|ENSRNOG00000007508|leucine-rich repeats and transmembrane domains 2 [Source:RGD Symbol%3BAcc:1587001]
rn6_v1_chr18_-_63488027_63488027	0.00108946	Gli3_Zic1	ENSRNOT00000023763|Ptpn2|ENSRNOG00000017453|protein tyrosine phosphatase%2C non-receptor type 2 [Source:RGD Symbol%3BAcc:620710]
rn6_v1_chr8_-_36760742_36760742	0.00106668	Gli3_Zic1	ENSRNOT00000017307|Ddx25|ENSRNOG00000012260|DEAD-box helicase 25 [Source:RGD Symbol%3BAcc:68381]
rn6_v1_chr9_+_17122284_17122284	0.000816522	Gli3_Zic1	ENSRNOT00000077749|Polr1c|ENSRNOG00000019079|RNA polymerase I subunit C [Source:RGD Symbol%3BAcc:1309689]
rn6_v1_chr1_+_219964429_219964429	0.00072547	Gli3_Zic1	ENSRNOT00000088288|Sptbn2|ENSRNOG00000058842|spectrin%2C beta%2C non-erythrocytic 2 [Source:RGD Symbol%3BAcc:3751]
rn6_v1_chr5_-_79317110_79317206	0.000715316	Gli3_Zic1	ENSRNOT00000082513|Whrn|ENSRNOG00000001700|whirlin [Source:RGD Symbol%3BAcc:631330]	ENSRNOT00000002309|Whrn|ENSRNOG00000001700|whirlin [Source:RGD Symbol%3BAcc:631330]
rn6_v1_chr14_-_20816588_20816588	0.00062589	Gli3_Zic1	ENSRNOT00000033806|Slc4a4|ENSRNOG00000003134|solute carrier family 4 member 4 [Source:RGD Symbol%3BAcc:68936]
rn6_v1_chr10_-_13580821_13580821	0.000601505	Gli3_Zic1	ENSRNOT00000009735|Ntn3|ENSRNOG00000006970|netrin 3 [Source:RGD Symbol%3BAcc:619811]
rn6_v1_chr14_+_76866135_76866135	0.000465203	Gli3_Zic1	ENSRNOT00000037291|Zfp518b|ENSRNOG00000028534|zinc finger protein 518B [Source:RGD Symbol%3BAcc:1564150]
rn6_v1_chr3_-_29984201_29984201	0.000374803	Gli3_Zic1	ENSRNOT00000006350|Zeb2|ENSRNOG00000004677|zinc finger E-box binding homeobox 2 [Source:RGD Symbol%3BAcc:1307272]
rn6_v1_chr1_-_124038966_124038966	0.000202753	Gli3_Zic1	ENSRNOT00000082487|Chrna7|ENSRNOG00000010853|cholinergic receptor nicotinic alpha 7 subunit [Source:RGD Symbol%3BAcc:2348]
rn6_v1_chr4_+_115416580_115416580	0.000172508	Gli3_Zic1	ENSRNOT00000018303|Atp6v1b1|ENSRNOG00000013573|ATPase H+ transporting V1 subunit B1 [Source:RGD Symbol%3BAcc:1310619]
