rn6_v1_chr10_-_96131880_96131880	0.321301	Hoxa1	ENSRNOT00000004578|Cacng5|ENSRNOG00000003288|calcium voltage-gated channel auxiliary subunit gamma 5 [Source:RGD Symbol%3BAcc:628805]
rn6_v1_chr5_-_155381732_155381732	0.170606	Hoxa1	ENSRNOT00000033670|Zbtb40|ENSRNOG00000022039|zinc finger and BTB domain containing 40 [Source:RGD Symbol%3BAcc:1309866]
rn6_v1_chr7_+_70753101_70753101	0.158836	Hoxa1	ENSRNOT00000090001|R3hdm2|ENSRNOG00000007801|R3H domain containing 2 [Source:RGD Symbol%3BAcc:1310066]
rn6_v1_chr1_-_260992291_260992366	0.155268	Hoxa1	ENSRNOT00000035415|Slit1|ENSRNOG00000026065|slit guidance ligand 1 [Source:RGD Symbol%3BAcc:69307]	ENSRNOT00000034758|Slit1|ENSRNOG00000026065|slit guidance ligand 1 [Source:RGD Symbol%3BAcc:69307]
rn6_v1_chr12_+_13810180_13810296	0.15177	Hoxa1	ENSRNOT00000084865|Tnrc18|ENSRNOG00000024482|trinucleotide repeat containing 18 [Source:RGD Symbol%3BAcc:1307540]	ENSRNOT00000038203|Tnrc18|ENSRNOG00000024482|trinucleotide repeat containing 18 [Source:RGD Symbol%3BAcc:1307540]
rn6_v1_chr3_+_154863072_154863072	0.147278	Hoxa1	ENSRNOT00000055200|Snhg11|ENSRNOG00000036802|small nucleolar RNA host gene 11 [Source:RGD Symbol%3BAcc:1563912]
rn6_v1_chr16_+_46731403_46731403	0.13356	Hoxa1	ENSRNOT00000017624|Tenm3|ENSRNOG00000012802|teneurin transmembrane protein 3 [Source:RGD Symbol%3BAcc:1306641]
rn6_v1_chr1_-_267245636_267245636	0.129425	Hoxa1	ENSRNOT00000082799|Sh3pxd2a|ENSRNOG00000020353|SH3 and PX domains 2A [Source:RGD Symbol%3BAcc:1311185]
rn6_v1_chr8_+_127171537_127171636	0.123649	Hoxa1	ENSRNOT00000078625|Golga4|ENSRNOG00000029910|golgin A4 [Source:RGD Symbol%3BAcc:1591925]	ENSRNOT00000051290|Golga4|ENSRNOG00000029910|golgin A4 [Source:RGD Symbol%3BAcc:1591925]	ENSRNOT00000087753|Golga4|ENSRNOG00000029910|golgin A4 [Source:RGD Symbol%3BAcc:1591925]
rn6_v1_chr15_+_51756978_51756978	0.123197	Hoxa1	ENSRNOT00000024067|Egr3|ENSRNOG00000017828|early growth response 3 [Source:RGD Symbol%3BAcc:2545]
rn6_v1_chr3_-_133122691_133122691	0.114697	Hoxa1	ENSRNOT00000083637|Tasp1|ENSRNOG00000004493|taspase 1 [Source:RGD Symbol%3BAcc:1308591]
rn6_v1_chr9_-_52238564_52238564	0.113167	Hoxa1	ENSRNOT00000005073|Col5a2|ENSRNOG00000003736|collagen type V alpha 2 chain [Source:RGD Symbol%3BAcc:70921]
rn6_v1_chr13_+_46169963_46169963	0.110645	Hoxa1	ENSRNOT00000005212|Thsd7b|ENSRNOG00000003878|thrombospondin type 1 domain containing 7B [Source:RGD Symbol%3BAcc:1306938]
rn6_v1_chr9_+_118849302_118849302	0.107356	Hoxa1	ENSRNOT00000087592|Dlgap1|ENSRNOG00000016196|DLG associated protein 1 [Source:RGD Symbol%3BAcc:620223]
rn6_v1_chr3_-_158328881_158328881	0.09447	Hoxa1	ENSRNOT00000044466|Ptprt|ENSRNOG00000032656|protein tyrosine phosphatase%2C receptor type%2C T [Source:RGD Symbol%3BAcc:1309653]
rn6_v1_chr7_+_124680294_124680294	0.0892589	Hoxa1	ENSRNOT00000014720|Mpped1|ENSRNOG00000010834|metallophosphoesterase domain containing 1 [Source:RGD Symbol%3BAcc:1308244]
rn6_v1_chr13_+_50974872_50974872	0.0887508	Hoxa1	ENSRNOT00000080768|Chit1|ENSRNOG00000028072|chitinase 1 [Source:RGD Symbol%3BAcc:1305646]
rn6_v1_chr19_-_50220455_50220455	0.0807163	Hoxa1	ENSRNOT00000079760|Sdr42e1|ENSRNOG00000051819|short chain dehydrogenase/reductase family 42E%2C member 1 [Source:RGD Symbol%3BAcc:1308481]
rn6_v1_chr9_-_88256115_88256115	0.0734772	Hoxa1	ENSRNOT00000076472|Col4a4|ENSRNOG00000014851|collagen type IV alpha 4 chain [Source:RGD Symbol%3BAcc:1305355]
rn6_v1_chr15_+_41448064_41448064	0.0726533	Hoxa1	ENSRNOT00000019551|Sacs|ENSRNOG00000014509|sacsin molecular chaperone [Source:RGD Symbol%3BAcc:1307281]
rn6_v1_chr17_-_66397653_66397653	0.0703765	Hoxa1	ENSRNOT00000024098|Actn2|ENSRNOG00000017833|actinin alpha 2 [Source:RGD Symbol%3BAcc:1308097]
rn6_v1_chr16_-_62241361_62241361	0.0654316	Hoxa1	ENSRNOT00000090036|Gsr|ENSRNOG00000014915|glutathione-disulfide reductase [Source:RGD Symbol%3BAcc:621747]
rn6_v1_chr10_+_42614713_42614713	0.0648769	Hoxa1	ENSRNOT00000081136|Gria1|ENSRNOG00000045816|glutamate ionotropic receptor AMPA type subunit 1 [Source:RGD Symbol%3BAcc:621531]	ENSRNOT00000073148|Gria1|ENSRNOG00000045816|glutamate ionotropic receptor AMPA type subunit 1 [Source:RGD Symbol%3BAcc:621531]
rn6_v1_chrX_+_82143789_82143789	0.0634749	Hoxa1	ENSRNOT00000003724|Pou3f4|ENSRNOG00000002784|POU class 3 homeobox 4 [Source:RGD Symbol%3BAcc:61947]
rn6_v1_chr8_+_82257849_82257849	0.0623638	Hoxa1	ENSRNOT00000011963|Gnb5|ENSRNOG00000047799|G protein subunit beta 5 [Source:RGD Symbol%3BAcc:620759]	ENSRNOT00000075708|Gnb5|ENSRNOG00000047799|G protein subunit beta 5 [Source:RGD Symbol%3BAcc:620759]
rn6_v1_chr4_-_155275161_155275161	0.0578397	Hoxa1	ENSRNOT00000032690|Rimklb|ENSRNOG00000023814|ribosomal modification protein rimK-like family member B [Source:RGD Symbol%3BAcc:1560851]
rn6_v1_chr7_+_123482255_123482255	0.0568927	Hoxa1	ENSRNOT00000064487|LOC688613|ENSRNOG00000043197|hypothetical protein LOC688613 [Source:RGD Symbol%3BAcc:1586487]
rn6_v1_chr17_+_4846789_4846789	0.0563607	Hoxa1	ENSRNOT00000073271|Gas1|ENSRNOG00000050485|growth arrest-specific 1 [Source:RGD Symbol%3BAcc:1586820]
rn6_v1_chr1_-_222350173_222350173	0.0538586	Hoxa1	ENSRNOT00000030625|Flrt1|ENSRNOG00000022428|fibronectin leucine rich transmembrane protein 1 [Source:RGD Symbol%3BAcc:1565152]
rn6_v1_chr6_+_26566494_26566494	0.0534653	Hoxa1	ENSRNOT00000079292|Gtf3c2|ENSRNOG00000056904|general transcription factor IIIC subunit 2 [Source:RGD Symbol%3BAcc:1560392]
rn6_v1_chr10_-_14443010_14443010	0.0528471	Hoxa1	ENSRNOT00000022142|Tmem204|ENSRNOG00000016494|transmembrane protein 204 [Source:RGD Symbol%3BAcc:1359314]
rn6_v1_chr20_-_31956649_31956649	0.0490777	Hoxa1	ENSRNOT00000072429|Hk1|ENSRNOG00000046891|hexokinase 1 [Source:RGD Symbol%3BAcc:2796]
rn6_v1_chr12_-_37682964_37682964	0.0476341	Hoxa1	ENSRNOT00000001421|RGD1563482|ENSRNOG00000001073|similar to hypothetical protein FLJ38663 [Source:RGD Symbol%3BAcc:1563482]
rn6_v1_chr12_+_13323547_13323547	0.04679	Hoxa1	ENSRNOT00000074138|Zfp853|ENSRNOG00000030579|zinc finger protein 853 [Source:RGD Symbol%3BAcc:1563095]
rn6_v1_chr19_+_55206455_55206455	0.0463085	Hoxa1	ENSRNOT00000039273|Zc3h18|ENSRNOG00000028501|zinc finger CCCH-type containing 18 [Source:RGD Symbol%3BAcc:1303257]
rn6_v1_chr7_-_122963299_122963299	0.0459904	Hoxa1	ENSRNOT00000090208|Rangap1|ENSRNOG00000031789|RAN GTPase activating protein 1 [Source:RGD Symbol%3BAcc:1310380]
rn6_v1_chr5_+_124021366_124021366	0.0459426	Hoxa1	ENSRNOT00000009977|Dab1|ENSRNOG00000007410|DAB1%2C reelin adaptor protein [Source:RGD Symbol%3BAcc:628770]
rn6_v1_chr2_+_164747677_164747677	0.0437105	Hoxa1	ENSRNOT00000018489|Mfsd1|ENSRNOG00000013790|major facilitator superfamily domain containing 1 [Source:RGD Symbol%3BAcc:1305751]
rn6_v1_chr12_+_49419582_49419582	0.0399125	Hoxa1	ENSRNOT00000082998|RGD1306556|ENSRNOG00000052424|similar to hypothetical protein A530094D01 [Source:RGD Symbol%3BAcc:1306556]
rn6_v1_chr5_-_126395668_126395668	0.0369875	Hoxa1	ENSRNOT00000010396|Acot11|ENSRNOG00000007837|acyl-CoA thioesterase 11 [Source:RGD Symbol%3BAcc:2324815]
rn6_v1_chr19_+_24545318_24545318	0.0368569	Hoxa1	ENSRNOT00000005071|Clgn|ENSRNOG00000003755|calmegin [Source:RGD Symbol%3BAcc:1592643]
rn6_v1_chr15_-_88036354_88036354	0.0357054	Hoxa1	ENSRNOT00000014747|Ednrb|ENSRNOG00000010997|endothelin receptor type B [Source:RGD Symbol%3BAcc:2536]
rn6_v1_chr1_-_127292090_127292090	0.0335122	Hoxa1	ENSRNOT00000016959|Lrrk1|ENSRNOG00000012730|leucine-rich repeat kinase 1 [Source:RGD Symbol%3BAcc:1308000]
rn6_v1_chr10_-_95062987_95062987	0.0236389	Hoxa1	ENSRNOT00000019781|Smurf2|ENSRNOG00000014623|SMAD specific E3 ubiquitin protein ligase 2 [Source:RGD Symbol%3BAcc:1310067]
rn6_v1_chr1_-_7443863_7443863	0.0228266	Hoxa1	ENSRNOT00000088558|Phactr2|ENSRNOG00000015473|phosphatase and actin regulator 2 [Source:RGD Symbol%3BAcc:1303141]
rn6_v1_chr13_+_77485113_77485113	0.0203595	Hoxa1	ENSRNOT00000080254|Tnr|ENSRNOG00000002468|tenascin R [Source:RGD Symbol%3BAcc:3886]
rn6_v1_chr13_+_84474319_84474362	0.0201399	Hoxa1	ENSRNOT00000031367|Ildr2|ENSRNOG00000025151|immunoglobulin-like domain containing receptor 2 [Source:RGD Symbol%3BAcc:1596420]	ENSRNOT00000072244|Ildr2|ENSRNOG00000025151|immunoglobulin-like domain containing receptor 2 [Source:RGD Symbol%3BAcc:1596420]	ENSRNOT00000072897|Ildr2|ENSRNOG00000025151|immunoglobulin-like domain containing receptor 2 [Source:RGD Symbol%3BAcc:1596420]	ENSRNOT00000064168|Ildr2|ENSRNOG00000025151|immunoglobulin-like domain containing receptor 2 [Source:RGD Symbol%3BAcc:1596420]	ENSRNOT00000074954|Ildr2|ENSRNOG00000025151|immunoglobulin-like domain containing receptor 2 [Source:RGD Symbol%3BAcc:1596420]	ENSRNOT00000073696|Ildr2|ENSRNOG00000025151|immunoglobulin-like domain containing receptor 2 [Source:RGD Symbol%3BAcc:1596420]
rn6_v1_chr13_+_71107465_71107465	0.0201241	Hoxa1	ENSRNOT00000003239|Rgs8|ENSRNOG00000002369|regulator of G-protein signaling 8 [Source:RGD Symbol%3BAcc:3571]
rn6_v1_chr2_+_3662763_3662763	0.0184741	Hoxa1	ENSRNOT00000017828|Mctp1|ENSRNOG00000013282|multiple C2 and transmembrane domain containing 1 [Source:RGD Symbol%3BAcc:1305199]
rn6_v1_chr8_-_2045817_2045817	0.0182183	Hoxa1	ENSRNOT00000009542|Gria4|ENSRNOG00000006957|glutamate ionotropic receptor AMPA type subunit 4 [Source:RGD Symbol%3BAcc:61863]	ENSRNOT00000081171|Gria4|ENSRNOG00000006957|glutamate ionotropic receptor AMPA type subunit 4 [Source:RGD Symbol%3BAcc:61863]	ENSRNOT00000078765|Gria4|ENSRNOG00000006957|glutamate ionotropic receptor AMPA type subunit 4 [Source:RGD Symbol%3BAcc:61863]
rn6_v1_chr10_+_67427066_67427066	0.0174594	Hoxa1	ENSRNOT00000035642|Atad5|ENSRNOG00000021903|ATPase family%2C AAA domain containing 5 [Source:RGD Symbol%3BAcc:1561464]
rn6_v1_chr5_-_7941822_7941822	0.0141467	Hoxa1	ENSRNOT00000079917|Prex2|ENSRNOG00000005391|phosphatidylinositol-3%2C4%2C5-trisphosphate-dependent Rac exchange factor 2 [Source:RGD Symbol%3BAcc:1307865]
rn6_v1_chr12_+_11179329_11179329	0.0137615	Hoxa1	ENSRNOT00000001302|Zfp394|ENSRNOG00000000983|zinc finger protein 394 [Source:RGD Symbol%3BAcc:628654]
rn6_v1_chr14_+_3506339_3506339	0.013167	Hoxa1	ENSRNOT00000002867|Tgfbr3|ENSRNOG00000002093|transforming growth factor beta receptor 3 [Source:RGD Symbol%3BAcc:61821]
rn6_v1_chr10_-_87153982_87153982	0.0119593	Hoxa1	ENSRNOT00000014414|Krt222|ENSRNOG00000010839|keratin 222 [Source:RGD Symbol%3BAcc:1560383]
rn6_v1_chr6_+_145546595_145546595	0.0105589	Hoxa1	ENSRNOT00000007112|Rapgef5|ENSRNOG00000005271|Rap guanine nucleotide exchange factor 5 [Source:RGD Symbol%3BAcc:1561668]
rn6_v1_chr12_+_17277635_17277635	0.00987993	Hoxa1	ENSRNOT00000001734|LOC498154|ENSRNOG00000001289|hypothetical protein LOC498154 [Source:RGD Symbol%3BAcc:1566418]
rn6_v1_chr4_-_4473307_4473307	0.00746073	Hoxa1	ENSRNOT00000045773|Dpp6|ENSRNOG00000030547|dipeptidyl peptidase like 6 [Source:RGD Symbol%3BAcc:68402]
rn6_v1_chr11_-_64421248_64421248	0.0072329	Hoxa1	ENSRNOT00000066997|Igsf11|ENSRNOG00000001525|immunoglobulin superfamily%2C member 11 [Source:RGD Symbol%3BAcc:1308758]
rn6_v1_chr4_-_184096806_184096806	0.00363161	Hoxa1	ENSRNOT00000055433|LOC100362344|ENSRNOG00000036910|mKIAA1238 protein-like [Source:RGD Symbol%3BAcc:2318342]
rn6_v1_chr10_-_65507581_65507581	0.00346504	Hoxa1	ENSRNOT00000016759|Supt6h|ENSRNOG00000012240|SPT6 homolog%2C histone chaperone [Source:RGD Symbol%3BAcc:1309290]
rn6_v1_chr11_-_25078740_25078740	0.00315407	Hoxa1	ENSRNOT00000002109|Cyyr1|ENSRNOG00000001544|cysteine and tyrosine rich 1 [Source:RGD Symbol%3BAcc:1359578]
rn6_v1_chr20_-_6556350_6556350	0.00293819	Hoxa1	ENSRNOT00000035819|Lemd2|ENSRNOG00000025864|LEM domain containing 2 [Source:RGD Symbol%3BAcc:1305341]
rn6_v1_chrX_-_104984341_104984341	0.00258768	Hoxa1	ENSRNOT00000077996|Xkrx|ENSRNOG00000054136|XK related%2C X-linked [Source:RGD Symbol%3BAcc:1359223]
rn6_v1_chr15_-_18675431_18675431	0.00208688	Hoxa1	ENSRNOT00000080794|Abhd6|ENSRNOG00000008167|abhydrolase domain containing 6 [Source:RGD Symbol%3BAcc:1359323]
rn6_v1_chr17_-_55346279_55346279	0.00115089	Hoxa1	ENSRNOT00000025037|Svil|ENSRNOG00000018110|supervillin [Source:RGD Symbol%3BAcc:1306354]
rn6_v1_chr16_+_24980723_24980723	0.000114479	Hoxa1	ENSRNOT00000082142|Tma16|ENSRNOG00000014188|translation machinery associated 16 homolog [Source:RGD Symbol%3BAcc:1305222]
