rn6_v1_chr14_+_4362717_4362717	0.281789	Hoxa11_Hoxc12	ENSRNOT00000002887|Barhl2|ENSRNOG00000002117|BarH-like homeobox 2 [Source:RGD Symbol%3BAcc:620726]
rn6_v1_chr4_-_82173207_82173207	0.218608	Hoxa11_Hoxc12	ENSRNOT00000074167|Hoxa5|ENSRNOG00000047951|homeo box A5 [Source:RGD Symbol%3BAcc:620609]
rn6_v1_chr7_-_13751271_13751271	0.201507	Hoxa11_Hoxc12	ENSRNOT00000009931|Slc1a6|ENSRNOG00000007509|solute carrier family 1 member 6 [Source:RGD Symbol%3BAcc:620340]
rn6_v1_chr10_+_84152152_84152152	0.185224	Hoxa11_Hoxc12	ENSRNOT00000010724|Hoxb5|ENSRNOG00000008010|homeo box B5 [Source:RGD Symbol%3BAcc:1562292]
rn6_v1_chr5_+_152533349_152533349	0.126497	Hoxa11_Hoxc12	ENSRNOT00000067524|Trim63|ENSRNOG00000016543|tripartite motif containing 63 [Source:RGD Symbol%3BAcc:619964]
rn6_v1_chr5_-_156734541_156734541	0.0997169	Hoxa11_Hoxc12	ENSRNOT00000021036|LOC100909857|ENSRNOG00000015677|cytidine deaminase-like [Source:RGD Symbol%3BAcc:6501229]
rn6_v1_chr3_-_64554953_64554953	0.0965767	Hoxa11_Hoxc12	ENSRNOT00000067452|LOC102553814|ENSRNOG00000042321|serine/arginine repetitive matrix protein 1-like [Source:RGD Symbol%3BAcc:7718479]
rn6_v1_chr15_-_37831031_37831031	0.085384	Hoxa11_Hoxc12	ENSRNOT00000091562|Eef1akmt1|ENSRNOG00000009849|eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1 [Source:RGD Symbol%3BAcc:1306762]
rn6_v1_chr1_+_154606490_154606490	0.0845469	Hoxa11_Hoxc12	ENSRNOT00000024095|Ccdc89|ENSRNOG00000022766|coiled-coil domain containing 89 [Source:RGD Symbol%3BAcc:1305335]
rn6_v1_chr4_+_66276835_66276835	0.0819217	Hoxa11_Hoxc12	ENSRNOT00000007544|Fmc1|ENSRNOG00000005618|formation of mitochondrial complex V assembly factor 1 [Source:RGD Symbol%3BAcc:1559476]
rn6_v1_chr10_-_109622745_109622745	0.0750206	Hoxa11_Hoxc12	ENSRNOT00000074354|Pde6g|ENSRNOG00000046962|phosphodiesterase 6G [Source:RGD Symbol%3BAcc:1591130]	ENSRNOT00000088317|Pde6g|ENSRNOG00000046962|phosphodiesterase 6G [Source:RGD Symbol%3BAcc:1591130]
rn6_v1_chr3_+_11593655_11593655	0.0742358	Hoxa11_Hoxc12	ENSRNOT00000074122|Pip5kl1|ENSRNOG00000048676|phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:RGD Symbol%3BAcc:1597527]
rn6_v1_chr1_-_93949187_93949187	0.0709351	Hoxa11_Hoxc12	ENSRNOT00000018956|Zfp536|ENSRNOG00000014163|zinc finger protein 536 [Source:RGD Symbol%3BAcc:1563363]
rn6_v1_chr7_-_11963268_11963268	0.0698186	Hoxa11_Hoxc12	ENSRNOT00000080342|Csnk1g2|ENSRNOG00000018529|casein kinase 1%2C gamma 2 [Source:RGD Symbol%3BAcc:621407]	ENSRNOT00000025266|Csnk1g2|ENSRNOG00000018529|casein kinase 1%2C gamma 2 [Source:RGD Symbol%3BAcc:621407]
rn6_v1_chr4_-_34194764_34194764	0.0697819	Hoxa11_Hoxc12	ENSRNOT00000045270|Col28a1|ENSRNOG00000033618|collagen type XXVIII alpha 1 chain [Source:RGD Symbol%3BAcc:1564680]
rn6_v1_chr13_+_47440803_47440803	0.0692099	Hoxa11_Hoxc12	ENSRNOT00000030476|Yod1|ENSRNOG00000025704|YOD1 deubiquitinase [Source:RGD Symbol%3BAcc:1359726]
rn6_v1_chr4_+_10748745_10748745	0.0661332	Hoxa11_Hoxc12	ENSRNOT00000046142|Rsbn1l|ENSRNOG00000013431|round spermatid basic protein 1-like [Source:RGD Symbol%3BAcc:1308748]
rn6_v1_chr17_+_44763598_44763598	0.062008	Hoxa11_Hoxc12	ENSRNOT00000079880|Hist1h3b|ENSRNOG00000054539|histone cluster 1%2C H3b [Source:RGD Symbol%3BAcc:1591702]
rn6_v1_chr6_-_15191660_15191660	0.0613553	Hoxa11_Hoxc12	ENSRNOT00000092654|Nrxn1|ENSRNOG00000050220|neurexin 1 [Source:RGD Symbol%3BAcc:628659]
rn6_v1_chr14_-_20920286_20920286	0.0606995	Hoxa11_Hoxc12	ENSRNOT00000004391|Slc4a4|ENSRNOG00000003134|solute carrier family 4 member 4 [Source:RGD Symbol%3BAcc:68936]
rn6_v1_chr5_-_147584038_147584038	0.059095	Hoxa11_Hoxc12	ENSRNOT00000010983|Zbtb8a|ENSRNOG00000008300|zinc finger and BTB domain containing 8a [Source:RGD Symbol%3BAcc:1308756]
rn6_v1_chr1_-_156327352_156327352	0.0573262	Hoxa11_Hoxc12	ENSRNOT00000074282|LOC100911776|ENSRNOG00000048071|coiled-coil domain-containing protein 89-like [Source:RGD Symbol%3BAcc:6490972]
rn6_v1_chr4_+_97657671_97657671	0.0567182	Hoxa11_Hoxc12	ENSRNOT00000075400|Gng12|ENSRNOG00000050231|G protein subunit gamma 12 [Source:RGD Symbol%3BAcc:621516]
rn6_v1_chr8_+_82380757_82380757	0.0562645	Hoxa11_Hoxc12	ENSRNOT00000013512|Leo1|ENSRNOG00000010116|LEO1 homolog%2C Paf1/RNA polymerase II complex component [Source:RGD Symbol%3BAcc:1549772]
rn6_v1_chr4_+_140247313_140247335	0.0550879	Hoxa11_Hoxc12	ENSRNOT00000040255|Itpr1|ENSRNOG00000007104|inositol 1%2C4%2C5-trisphosphate receptor%2C type 1 [Source:RGD Symbol%3BAcc:2933]	ENSRNOT00000064025|Itpr1|ENSRNOG00000007104|inositol 1%2C4%2C5-trisphosphate receptor%2C type 1 [Source:RGD Symbol%3BAcc:2933]	ENSRNOT00000041130|Itpr1|ENSRNOG00000007104|inositol 1%2C4%2C5-trisphosphate receptor%2C type 1 [Source:RGD Symbol%3BAcc:2933]	ENSRNOT00000043646|Itpr1|ENSRNOG00000007104|inositol 1%2C4%2C5-trisphosphate receptor%2C type 1 [Source:RGD Symbol%3BAcc:2933]
rn6_v1_chr4_-_82258765_82258765	0.0530812	Hoxa11_Hoxc12	ENSRNOT00000008523|Hoxa5|ENSRNOG00000006466|homeo box A5 [Source:RGD Symbol%3BAcc:620609]
rn6_v1_chr17_+_77195247_77195247	0.0518828	Hoxa11_Hoxc12	ENSRNOT00000081940|Optn|ENSRNOG00000017941|optineurin [Source:RGD Symbol%3BAcc:628886]
rn6_v1_chr8_+_58347736_58347757	0.0518184	Hoxa11_Hoxc12	ENSRNOT00000080227|Slc35f2|ENSRNOG00000009014|solute carrier family 35%2C member F2 [Source:RGD Symbol%3BAcc:1311242]	ENSRNOT00000066222|Slc35f2|ENSRNOG00000009014|solute carrier family 35%2C member F2 [Source:RGD Symbol%3BAcc:1311242]
rn6_v1_chr1_-_53014466_53014466	0.0488003	Hoxa11_Hoxc12	ENSRNOT00000049831|Sft2d1|ENSRNOG00000024140|SFT2 domain containing 1 [Source:RGD Symbol%3BAcc:1359119]
rn6_v1_chr9_+_50526811_50526811	0.0486003	Hoxa11_Hoxc12	ENSRNOT00000036990|RGD1305645|ENSRNOG00000023576|similar to RIKEN cDNA 1500015O10 [Source:RGD Symbol%3BAcc:1305645]
rn6_v1_chr8_+_67615635_67615635	0.0453524	Hoxa11_Hoxc12	ENSRNOT00000008971|Itga11|ENSRNOG00000006723|integrin subunit alpha 11 [Source:RGD Symbol%3BAcc:1311711]
rn6_v1_chr11_-_74866451_74866451	0.0444032	Hoxa11_Hoxc12	ENSRNOT00000002330|Il13ra1|ENSRNOG00000001713|interleukin 13 receptor subunit alpha 1 [Source:RGD Symbol%3BAcc:628741]
rn6_v1_chr2_+_159138758_159138758	0.0439241	Hoxa11_Hoxc12	ENSRNOT00000087942|AABR07011152.1|ENSRNOG00000054349|
rn6_v1_chr11_-_4397361_4397361	0.0426909	Hoxa11_Hoxc12	ENSRNOT00000046370|Cadm2|ENSRNOG00000030840|cell adhesion molecule 2 [Source:RGD Symbol%3BAcc:1305678]
rn6_v1_chr17_+_9289189_9289189	0.03845	Hoxa11_Hoxc12	ENSRNOT00000015632|H2afy|ENSRNOG00000011523|H2A histone family%2C member Y [Source:RGD Symbol%3BAcc:621462]
rn6_v1_chr1_+_99561523_99561523	0.0376897	Hoxa11_Hoxc12	ENSRNOT00000038229|Ceacam18|ENSRNOG00000022701|carcinoembryonic antigen-related cell adhesion molecule 18 [Source:RGD Symbol%3BAcc:1563539]
rn6_v1_chr18_+_38847632_38847632	0.0374832	Hoxa11_Hoxc12	ENSRNOT00000014916|LOC102554034|ENSRNOG00000011225|ELMO domain-containing protein 2-like [Source:RGD Symbol%3BAcc:7532326]
rn6_v1_chrX_+_111735820_111735820	0.036867	Hoxa11_Hoxc12	ENSRNOT00000086948|Frmpd3|ENSRNOG00000056221|FERM and PDZ domain containing 3 [Source:RGD Symbol%3BAcc:1563753]
rn6_v1_chr14_+_84211600_84211600	0.0367629	Hoxa11_Hoxc12	ENSRNOT00000005996|Pes1|ENSRNOG00000004515|pescadillo ribosomal biogenesis factor 1 [Source:RGD Symbol%3BAcc:1559814]
rn6_v1_chr7_+_121480723_121480723	0.0365992	Hoxa11_Hoxc12	ENSRNOT00000065304|Atf4|ENSRNOG00000017801|activating transcription factor 4 [Source:RGD Symbol%3BAcc:621863]
rn6_v1_chr7_-_119200623_119200623	0.0357952	Hoxa11_Hoxc12	ENSRNOT00000029753|Eif3d|ENSRNOG00000005804|eukaryotic translation initiation factor 3%2C subunit D [Source:RGD Symbol%3BAcc:1303255]
rn6_v1_chr8_-_55087832_55087832	0.0356545	Hoxa11_Hoxc12	ENSRNOT00000032152|Dlat|ENSRNOG00000009994|dihydrolipoamide S-acetyltransferase [Source:RGD Symbol%3BAcc:619859]
rn6_v1_chr14_-_3288017_3288017	0.0340922	Hoxa11_Hoxc12	ENSRNOT00000080452|LOC689986|ENSRNOG00000047876|hypothetical protein LOC689986 [Source:RGD Symbol%3BAcc:1586315]
rn6_v1_chr14_+_46001849_46001849	0.0340341	Hoxa11_Hoxc12	ENSRNOT00000076611|Rell1|ENSRNOG00000002192|RELT-like 1 [Source:RGD Symbol%3BAcc:1307468]
rn6_v1_chr1_+_128606770_128606770	0.0337911	Hoxa11_Hoxc12	ENSRNOT00000073355|Ttc23|ENSRNOG00000013877|tetratricopeptide repeat domain 23 [Source:RGD Symbol%3BAcc:1310409]
rn6_v1_chr10_-_13446135_13446135	0.0318341	Hoxa11_Hoxc12	ENSRNOT00000084991|Kctd5|ENSRNOG00000057186|potassium channel tetramerization domain containing 5 [Source:RGD Symbol%3BAcc:1304990]
rn6_v1_chr7_+_117434419_117434419	0.0317322	Hoxa11_Hoxc12	ENSRNOT00000040981|Hgh1|ENSRNOG00000029238|HGH1 homolog [Source:RGD Symbol%3BAcc:1359226]
rn6_v1_chr18_+_70263359_70263359	0.0316663	Hoxa11_Hoxc12	ENSRNOT00000019573|Cfap53|ENSRNOG00000014585|cilia and flagella associated protein 53 [Source:RGD Symbol%3BAcc:1306734]
rn6_v1_chr6_-_51018050_51018050	0.0293308	Hoxa11_Hoxc12	ENSRNOT00000082691|Gpr22|ENSRNOG00000008423|G protein-coupled receptor 22 [Source:RGD Symbol%3BAcc:1310848]
rn6_v1_chr8_+_99568958_99568958	0.0281542	Hoxa11_Hoxc12	ENSRNOT00000073400|Plscr5|ENSRNOG00000047917|phospholipid scramblase family%2C member 5 [Source:RGD Symbol%3BAcc:1564500]
rn6_v1_chr18_+_36713869_36713869	0.028049	Hoxa11_Hoxc12	ENSRNOT00000025465|Pou4f3|ENSRNOG00000018842|POU class 4 homeobox 3 [Source:RGD Symbol%3BAcc:1310459]
rn6_v1_chr1_-_211265161_211265282	0.0277694	Hoxa11_Hoxc12	ENSRNOT00000080041|Bnip3|ENSRNOG00000017243|BCL2 interacting protein 3 [Source:RGD Symbol%3BAcc:620800]	ENSRNOT00000023477|Bnip3|ENSRNOG00000017243|BCL2 interacting protein 3 [Source:RGD Symbol%3BAcc:620800]
rn6_v1_chr2_-_32518643_32518643	0.0268726	Hoxa11_Hoxc12	ENSRNOT00000061032|Mast4|ENSRNOG00000010720|microtubule associated serine/threonine kinase family member 4 [Source:RGD Symbol%3BAcc:1310139]
rn6_v1_chrX_+_131617798_131617798	0.0261582	Hoxa11_Hoxc12	ENSRNOT00000074384|Prr32|ENSRNOG00000049388|proline rich 32 [Source:RGD Symbol%3BAcc:1583341]
rn6_v1_chr15_+_33544312_33544312	0.0229317	Hoxa11_Hoxc12	ENSRNOT00000020409|Bcl2l2|ENSRNOG00000015732|Bcl2-like 2 [Source:RGD Symbol%3BAcc:620717]
rn6_v1_chr6_+_96834525_96834525	0.0225452	Hoxa11_Hoxc12	ENSRNOT00000077935|Hif1a|ENSRNOG00000008292|hypoxia inducible factor 1 alpha subunit [Source:RGD Symbol%3BAcc:61928]
rn6_v1_chr1_-_225952516_225952516	0.0224635	Hoxa11_Hoxc12	ENSRNOT00000043387|Incenp|ENSRNOG00000032929|inner centromere protein [Source:RGD Symbol%3BAcc:1305292]
rn6_v1_chr3_-_154490851_154490851	0.0221073	Hoxa11_Hoxc12	ENSRNOT00000017213|Tti1|ENSRNOG00000012880|TELO2 interacting protein 1 [Source:RGD Symbol%3BAcc:1562582]
rn6_v1_chr2_-_18565842_18565842	0.0219158	Hoxa11_Hoxc12	ENSRNOT00000067456|Vcan|ENSRNOG00000029212|versican [Source:RGD Symbol%3BAcc:619940]	ENSRNOT00000063821|Vcan|ENSRNOG00000029212|versican [Source:RGD Symbol%3BAcc:619940]	ENSRNOT00000045532|Vcan|ENSRNOG00000029212|versican [Source:RGD Symbol%3BAcc:619940]
rn6_v1_chrX_-_2116483_2116483	0.0215862	Hoxa11_Hoxc12	ENSRNOT00000055077|Rp2|ENSRNOG00000025428|retinitis pigmentosa 2 (X-linked recessive) [Source:RGD Symbol%3BAcc:1565124]
rn6_v1_chr3_-_152179193_152179193	0.0214797	Hoxa11_Hoxc12	ENSRNOT00000026700|Rbm12|ENSRNOG00000049913|RNA binding motif protein 12 [Source:RGD Symbol%3BAcc:1594333]
rn6_v1_chr10_-_84920886_84920886	0.0211154	Hoxa11_Hoxc12	ENSRNOT00000068083|Sp2|ENSRNOG00000010492|Sp2 transcription factor [Source:RGD Symbol%3BAcc:1592078]
rn6_v1_chr4_-_176679815_176679815	0.0205474	Hoxa11_Hoxc12	ENSRNOT00000090122|Gys2|ENSRNOG00000059753|glycogen synthase 2 [Source:RGD Symbol%3BAcc:2773]
rn6_v1_chr6_+_107531528_107531528	0.0200202	Hoxa11_Hoxc12	ENSRNOT00000077555|Acot3|ENSRNOG00000053460|acyl-CoA thioesterase 3 [Source:RGD Symbol%3BAcc:1564089]
rn6_v1_chr14_-_44375804_44375804	0.0191865	Hoxa11_Hoxc12	ENSRNOT00000042825|LOC100362751|ENSRNOG00000031052|ribosomal protein P2-like [Source:RGD Symbol%3BAcc:2324107]
rn6_v1_chr5_-_60559533_60559533	0.0186544	Hoxa11_Hoxc12	ENSRNOT00000092899|Zbtb5|ENSRNOG00000012726|zinc finger and BTB domain containing 5 [Source:RGD Symbol%3BAcc:1307367]
rn6_v1_chr3_-_121226125_121226125	0.0183172	Hoxa11_Hoxc12	ENSRNOT00000055875|Anapc1|ENSRNOG00000016965|anaphase promoting complex subunit 1 [Source:RGD Symbol%3BAcc:1306629]
rn6_v1_chr1_-_53038229_53038229	0.0172818	Hoxa11_Hoxc12	ENSRNOT00000017282|Mpc1|ENSRNOG00000012415|mitochondrial pyruvate carrier 1 [Source:RGD Symbol%3BAcc:620902]
rn6_v1_chr5_+_165415136_165415278	0.0169076	Hoxa11_Hoxc12	ENSRNOT00000016317|Masp2|ENSRNOG00000011258|mannan-binding lectin serine peptidase 2 [Source:RGD Symbol%3BAcc:620214]	ENSRNOT00000079407|Masp2|ENSRNOG00000011258|mannan-binding lectin serine peptidase 2 [Source:RGD Symbol%3BAcc:620214]
rn6_v1_chr5_-_109651730_109651730	0.0168301	Hoxa11_Hoxc12	ENSRNOT00000093032|Elavl2|ENSRNOG00000006853|ELAV like RNA binding protein 2 [Source:RGD Symbol%3BAcc:628611]
rn6_v1_chr2_-_202816562_202816562	0.0167812	Hoxa11_Hoxc12	ENSRNOT00000020401|Fam46c|ENSRNOG00000015222|family with sequence similarity 46%2C member C [Source:RGD Symbol%3BAcc:1359446]
rn6_v1_chr3_+_159392193_159392198	0.0165639	Hoxa11_Hoxc12	ENSRNOT00000078101|Ift52|ENSRNOG00000007692|intraflagellar transport 52 [Source:RGD Symbol%3BAcc:1311004]	ENSRNOT00000066260|Ift52|ENSRNOG00000007692|intraflagellar transport 52 [Source:RGD Symbol%3BAcc:1311004]
rn6_v1_chr7_-_15852930_15852930	0.0159569	Hoxa11_Hoxc12	ENSRNOT00000009270|LOC691422|ENSRNOG00000007076|similar to zinc finger protein 101 [Source:RGD Symbol%3BAcc:1583951]
rn6_v1_chr5_-_156781291_156781291	0.0159312	Hoxa11_Hoxc12	ENSRNOT00000075128|Cda|ENSRNOG00000049700|cytidine deaminase [Source:RGD Symbol%3BAcc:1311101]
rn6_v1_chr9_-_17880706_17880706	0.01581	Hoxa11_Hoxc12	ENSRNOT00000031549|Aars2|ENSRNOG00000025808|alanyl-tRNA synthetase 2%2C mitochondrial [Source:RGD Symbol%3BAcc:1310617]
rn6_v1_chr7_-_91538673_91538673	0.0156857	Hoxa11_Hoxc12	ENSRNOT00000006209|Rad21|ENSRNOG00000004420|RAD21 cohesin complex component [Source:RGD Symbol%3BAcc:1594529]
rn6_v1_chr16_+_62251243_62251243	0.0152125	Hoxa11_Hoxc12	ENSRNOT00000020347|Ubxn8|ENSRNOG00000015109|UBX domain protein 8 [Source:RGD Symbol%3BAcc:1306023]
rn6_v1_chr16_-_20511818_20511818	0.0150217	Hoxa11_Hoxc12	ENSRNOT00000026567|Lsm4|ENSRNOG00000019572|LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated [Source:RGD Symbol%3BAcc:1306808]
rn6_v1_chr2_+_230901126_230901348	0.0142682	Hoxa11_Hoxc12	ENSRNOT00000016026|Camk2d|ENSRNOG00000011589|calcium/calmodulin-dependent protein kinase II delta [Source:RGD Symbol%3BAcc:2263]	ENSRNOT00000015564|Camk2d|ENSRNOG00000011589|calcium/calmodulin-dependent protein kinase II delta [Source:RGD Symbol%3BAcc:2263]	ENSRNOT00000068198|Camk2d|ENSRNOG00000011589|calcium/calmodulin-dependent protein kinase II delta [Source:RGD Symbol%3BAcc:2263]
rn6_v1_chr15_-_39705208_39705208	0.014198	Hoxa11_Hoxc12	ENSRNOT00000015412|Phf11|ENSRNOG00000053915|PHD finger protein 11 [Source:RGD Symbol%3BAcc:1310853]
rn6_v1_chr4_-_50312608_50312608	0.0139446	Hoxa11_Hoxc12	ENSRNOT00000010019|Fezf1|ENSRNOG00000007608|Fez family zinc finger 1 [Source:RGD Symbol%3BAcc:1560480]
rn6_v1_chr8_+_99625545_99625602	0.0135672	Hoxa11_Hoxc12	ENSRNOT00000010689|Plscr1|ENSRNOG00000008048|phospholipid scramblase 1 [Source:RGD Symbol%3BAcc:620521]	ENSRNOT00000056727|Plscr1|ENSRNOG00000008048|phospholipid scramblase 1 [Source:RGD Symbol%3BAcc:620521]
rn6_v1_chrX_-_2116656_2116656	0.0135413	Hoxa11_Hoxc12	ENSRNOT00000081913|Rp2|ENSRNOG00000025428|retinitis pigmentosa 2 (X-linked recessive) [Source:RGD Symbol%3BAcc:1565124]
rn6_v1_chr14_-_6201002_6201002	0.0131832	Hoxa11_Hoxc12	ENSRNOT00000049165|LOC100366030|ENSRNOG00000047293|rCG37858-like [Source:RGD Symbol%3BAcc:2324613]
rn6_v1_chr8_-_36388224_36388224	0.0129089	Hoxa11_Hoxc12	ENSRNOT00000038312|Tirap|ENSRNOG00000021420|TIR domain containing adaptor protein [Source:RGD Symbol%3BAcc:1595496]
rn6_v1_chr7_+_119554354_119554354	0.012822	Hoxa11_Hoxc12	ENSRNOT00000000203|Csf2rb|ENSRNOG00000000187|colony stimulating factor 2 receptor beta common subunit [Source:RGD Symbol%3BAcc:620189]
rn6_v1_chr1_+_47162394_47162394	0.0125507	Hoxa11_Hoxc12	ENSRNOT00000068457|Tmem181|ENSRNOG00000018158|transmembrane protein 181 [Source:RGD Symbol%3BAcc:1566403]
rn6_v1_chr16_-_64745207_64745207	0.0123572	Hoxa11_Hoxc12	ENSRNOT00000032467|Tti2|ENSRNOG00000023494|TELO2 interacting protein 2 [Source:RGD Symbol%3BAcc:1310414]
rn6_v1_chr1_-_22625204_22625204	0.0120692	Hoxa11_Hoxc12	ENSRNOT00000021694|Vnn1|ENSRNOG00000016219|vanin 1 [Source:RGD Symbol%3BAcc:1310075]
rn6_v1_chr11_-_70211701_70211701	0.0113167	Hoxa11_Hoxc12	ENSRNOT00000076114|Muc13|ENSRNOG00000001794|mucin 13%2C cell surface associated [Source:RGD Symbol%3BAcc:708547]
rn6_v1_chr2_-_30634243_30634243	0.011286	Hoxa11_Hoxc12	ENSRNOT00000077537|Marveld2|ENSRNOG00000052167|MARVEL domain containing 2 [Source:RGD Symbol%3BAcc:1306909]
rn6_v1_chr9_+_11031841_11031841	0.0112632	Hoxa11_Hoxc12	ENSRNOT00000074695|Sh3gl1|ENSRNOG00000049683|SH3 domain-containing GRB2-like 1 [Source:RGD Symbol%3BAcc:708456]
rn6_v1_chr5_-_14356692_14356692	0.0109286	Hoxa11_Hoxc12	ENSRNOT00000085654|Atp6v1h|ENSRNOG00000030862|ATPase H+ transporting V1 subunit H [Source:RGD Symbol%3BAcc:1562450]
rn6_v1_chr2_+_180936688_180936688	0.010495	Hoxa11_Hoxc12	ENSRNOT00000016039|Asic5|ENSRNOG00000011842|acid sensing ion channel subunit family member 5 [Source:RGD Symbol%3BAcc:69295]
rn6_v1_chr3_-_79282493_79282493	0.0102706	Hoxa11_Hoxc12	ENSRNOT00000049832|Ptprj|ENSRNOG00000034025|protein tyrosine phosphatase%2C receptor type%2C J [Source:RGD Symbol%3BAcc:3454]
rn6_v1_chr10_+_57131386_57131386	0.01024	Hoxa11_Hoxc12	ENSRNOT00000026507|Psmb6|ENSRNOG00000019551|proteasome subunit beta 6 [Source:RGD Symbol%3BAcc:61881]
rn6_v1_chr7_+_118502676_118502676	0.00950002	Hoxa11_Hoxc12	ENSRNOT00000005925|Commd5|ENSRNOG00000004484|COMM domain containing 5 [Source:RGD Symbol%3BAcc:621468]
rn6_v1_chr7_+_54756043_54756043	0.0089825	Hoxa11_Hoxc12	ENSRNOT00000063917|Krr1|ENSRNOG00000004035|KRR1%2C small subunit processome component homolog [Source:RGD Symbol%3BAcc:1306183]
rn6_v1_chr11_+_66316606_66316606	0.00801594	Hoxa11_Hoxc12	ENSRNOT00000041715|Stxbp5l|ENSRNOG00000002496|syntaxin binding protein 5-like [Source:RGD Symbol%3BAcc:1311561]
rn6_v1_chr6_-_102372611_102372611	0.0073832	Hoxa11_Hoxc12	ENSRNOT00000085927|Rdh11|ENSRNOG00000054770|retinol dehydrogenase 11 (all-trans/9-cis/11-cis) [Source:RGD Symbol%3BAcc:1312001]
rn6_v1_chr7_+_66717434_66717434	0.00677591	Hoxa11_Hoxc12	ENSRNOT00000077878|Mon2|ENSRNOG00000004185|MON2 homolog%2C regulator of endosome-to-Golgi trafficking [Source:RGD Symbol%3BAcc:1308808]
rn6_v1_chr18_-_37776453_37776453	0.00652219	Hoxa11_Hoxc12	ENSRNOT00000087876|Dpysl3|ENSRNOG00000018992|dihydropyrimidinase-like 3 [Source:RGD Symbol%3BAcc:2410]
rn6_v1_chr16_+_80904125_80904125	0.00631631	Hoxa11_Hoxc12	ENSRNOT00000080832|Tmco3|ENSRNOG00000046973|transmembrane and coiled-coil domains 3 [Source:RGD Symbol%3BAcc:1306586]
rn6_v1_chr20_-_30749940_30749940	0.00605934	Hoxa11_Hoxc12	ENSRNOT00000065127|Sgpl1|ENSRNOG00000000565|sphingosine-1-phosphate lyase 1 [Source:RGD Symbol%3BAcc:628599]
rn6_v1_chr2_+_196655469_196655469	0.00541212	Hoxa11_Hoxc12	ENSRNOT00000028730|Ctsk|ENSRNOG00000021155|cathepsin K [Source:RGD Symbol%3BAcc:61810]
rn6_v1_chr8_+_1459526_1459526	0.00518613	Hoxa11_Hoxc12	ENSRNOT00000034503|Kbtbd3|ENSRNOG00000022252|kelch repeat and BTB domain containing 3 [Source:RGD Symbol%3BAcc:1310895]
rn6_v1_chr1_+_68239314_68239314	0.00505787	Hoxa11_Hoxc12	ENSRNOT00000070823|Vom1r109|ENSRNOG00000047242|vomeronasal 1 receptor 109 [Source:RGD Symbol%3BAcc:1359228]
rn6_v1_chr5_+_127489418_127489418	0.00449293	Hoxa11_Hoxc12	ENSRNOT00000065275|RGD1559786|ENSRNOG00000012724|similar to RIKEN cDNA 0610037L13 [Source:RGD Symbol%3BAcc:1559786]
rn6_v1_chr1_+_94718402_94718402	0.00443098	Hoxa11_Hoxc12	ENSRNOT00000046035|Uqcrb|ENSRNOG00000032204|ubiquinol-cytochrome c reductase binding protein [Source:RGD Symbol%3BAcc:1311971]
rn6_v1_chr10_-_83128297_83128297	0.00420861	Hoxa11_Hoxc12	ENSRNOT00000082160|Kat7|ENSRNOG00000022664|lysine acetyltransferase 7 [Source:RGD Symbol%3BAcc:727966]
rn6_v1_chr1_-_271275989_271275989	0.00408635	Hoxa11_Hoxc12	ENSRNOT00000075570|LOC100912218|ENSRNOG00000046036|inositol 1%2C4%2C5-trisphosphate receptor-interacting protein-like [Source:RGD Symbol%3BAcc:6488464]
rn6_v1_chr16_+_68633720_68633720	0.00356929	Hoxa11_Hoxc12	ENSRNOT00000081838|LOC100911229|ENSRNOG00000055604|sperm motility kinase-like [Source:RGD Symbol%3BAcc:6494469]
rn6_v1_chr6_-_102372385_102372385	0.00336871	Hoxa11_Hoxc12	ENSRNOT00000078436|Rdh11|ENSRNOG00000054770|retinol dehydrogenase 11 (all-trans/9-cis/11-cis) [Source:RGD Symbol%3BAcc:1312001]
rn6_v1_chr10_-_90356242_90356242	0.00297409	Hoxa11_Hoxc12	ENSRNOT00000028496|Slc25a39|ENSRNOG00000020994|solute carrier family 25%2C member 39 [Source:RGD Symbol%3BAcc:1306193]
rn6_v1_chr13_-_53870428_53870428	0.00289245	Hoxa11_Hoxc12	ENSRNOT00000000812|Nr5a2|ENSRNOG00000000653|nuclear receptor subfamily 5%2C group A%2C member 2 [Source:RGD Symbol%3BAcc:68353]
rn6_v1_chr5_+_122019301_122019301	0.0028472	Hoxa11_Hoxc12	ENSRNOT00000068158|Pde4b|ENSRNOG00000005905|phosphodiesterase 4B [Source:RGD Symbol%3BAcc:3280]
rn6_v1_chr16_-_36080191_36080191	0.00255451	Hoxa11_Hoxc12	ENSRNOT00000017635|Hmgb2l1|ENSRNOG00000013167|high mobility group box 2-like 1 [Source:RGD Symbol%3BAcc:1564519]
rn6_v1_chr13_-_47440682_47440682	0.0023846	Hoxa11_Hoxc12	ENSRNOT00000037679|Pfkfb2|ENSRNOG00000004162|6-phosphofructo-2-kinase/fructose-2%2C6-biphosphatase 2 [Source:RGD Symbol%3BAcc:3309]	ENSRNOT00000005729|Pfkfb2|ENSRNOG00000004162|6-phosphofructo-2-kinase/fructose-2%2C6-biphosphatase 2 [Source:RGD Symbol%3BAcc:3309]	ENSRNOT00000050354|Pfkfb2|ENSRNOG00000004162|6-phosphofructo-2-kinase/fructose-2%2C6-biphosphatase 2 [Source:RGD Symbol%3BAcc:3309]	ENSRNOT00000050859|Pfkfb2|ENSRNOG00000004162|6-phosphofructo-2-kinase/fructose-2%2C6-biphosphatase 2 [Source:RGD Symbol%3BAcc:3309]
rn6_v1_chr6_-_92007917_92007957	0.00214354	Hoxa11_Hoxc12	ENSRNOT00000006425|Sos2|ENSRNOG00000004826|SOS Ras/Rho guanine nucleotide exchange factor 2 [Source:RGD Symbol%3BAcc:620435]	ENSRNOT00000089891|Sos2|ENSRNOG00000004826|SOS Ras/Rho guanine nucleotide exchange factor 2 [Source:RGD Symbol%3BAcc:620435]
rn6_v1_chr11_+_73693814_73693877	0.00199896	Hoxa11_Hoxc12	ENSRNOT00000081081|Lsg1|ENSRNOG00000001727|large 60S subunit nuclear export GTPase 1 [Source:RGD Symbol%3BAcc:1309089]	ENSRNOT00000002354|Lsg1|ENSRNOG00000001727|large 60S subunit nuclear export GTPase 1 [Source:RGD Symbol%3BAcc:1309089]	ENSRNOT00000090940|Lsg1|ENSRNOG00000001727|large 60S subunit nuclear export GTPase 1 [Source:RGD Symbol%3BAcc:1309089]
rn6_v1_chr10_+_63884338_63884338	0.00185736	Hoxa11_Hoxc12	ENSRNOT00000007100|Ywhae|ENSRNOG00000005290|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein%2C epsilon [Source:RGD Symbol%3BAcc:62000]
rn6_v1_chr9_-_112027155_112027240	0.00165408	Hoxa11_Hoxc12	ENSRNOT00000021258|Pja2|ENSRNOG00000015528|praja ring finger ubiquitin ligase 2 [Source:RGD Symbol%3BAcc:620273]	ENSRNOT00000080962|Pja2|ENSRNOG00000015528|praja ring finger ubiquitin ligase 2 [Source:RGD Symbol%3BAcc:620273]
rn6_v1_chr20_-_6556350_6556350	0.0014721	Hoxa11_Hoxc12	ENSRNOT00000035819|Lemd2|ENSRNOG00000025864|LEM domain containing 2 [Source:RGD Symbol%3BAcc:1305341]
rn6_v1_chr13_-_51297621_51297621	0.00146963	Hoxa11_Hoxc12	ENSRNOT00000030926|Ndufv3|ENSRNOG00000027593|NADH:ubiquinone oxidoreductase subunit V3 [Source:RGD Symbol%3BAcc:621020]
rn6_v1_chr5_-_160282810_160282810	0.00136136	Hoxa11_Hoxc12	ENSRNOT00000076160|Ddi2|ENSRNOG00000012274|DNA-damage inducible protein 2 [Source:RGD Symbol%3BAcc:1311815]	ENSRNOT00000016352|Ddi2|ENSRNOG00000012274|DNA-damage inducible protein 2 [Source:RGD Symbol%3BAcc:1311815]
rn6_v1_chr6_-_51019407_51019407	0.00130079	Hoxa11_Hoxc12	ENSRNOT00000011659|Gpr22|ENSRNOG00000008423|G protein-coupled receptor 22 [Source:RGD Symbol%3BAcc:1310848]
rn6_v1_chr2_-_189333322_189333322	0.00118707	Hoxa11_Hoxc12	ENSRNOT00000073599|Hax1|ENSRNOG00000045647|HCLS1 associated protein X-1 [Source:RGD Symbol%3BAcc:727960]	ENSRNOT00000071253|Hax1|ENSRNOG00000045647|HCLS1 associated protein X-1 [Source:RGD Symbol%3BAcc:727960]	ENSRNOT00000076325|Hax1|ENSRNOG00000045647|HCLS1 associated protein X-1 [Source:RGD Symbol%3BAcc:727960]
rn6_v1_chr17_+_47302272_47302272	0.00100994	Hoxa11_Hoxc12	ENSRNOT00000090021|Nme8|ENSRNOG00000058285|NME/NM23 family member 8 [Source:RGD Symbol%3BAcc:735069]
rn6_v1_chrX_-_153491837_153491837	0.000490149	Hoxa11_Hoxc12	ENSRNOT00000089027|LOC100360413|ENSRNOG00000051885|eukaryotic translation elongation factor 1 alpha 1-like [Source:RGD Symbol%3BAcc:2322143]
rn6_v1_chr16_+_24980723_24980723	0.000487873	Hoxa11_Hoxc12	ENSRNOT00000082142|Tma16|ENSRNOG00000014188|translation machinery associated 16 homolog [Source:RGD Symbol%3BAcc:1305222]
rn6_v1_chr5_-_115387377_115387413	0.000302217	Hoxa11_Hoxc12	ENSRNOT00000036030|RGD1560146|ENSRNOG00000026169|similar to hypothetical protein MGC34837 [Source:RGD Symbol%3BAcc:1560146]	ENSRNOT00000077492|RGD1560146|ENSRNOG00000026169|similar to hypothetical protein MGC34837 [Source:RGD Symbol%3BAcc:1560146]
rn6_v1_chr1_+_247228061_247228061	0.000238097	Hoxa11_Hoxc12	ENSRNOT00000020809|Rcl1|ENSRNOG00000015491|RNA terminal phosphate cyclase-like 1 [Source:RGD Symbol%3BAcc:1305320]
rn6_v1_chr1_-_174379566_174379566	0.000152835	Hoxa11_Hoxc12	ENSRNOT00000067388|Tmem9b|ENSRNOG00000013591|TMEM9 domain family%2C member B [Source:RGD Symbol%3BAcc:1310775]
rn6_v1_chr2_+_166856784_166856784	9.34546e-05	Hoxa11_Hoxc12	ENSRNOT00000035765|Otol1|ENSRNOG00000021186|otolin 1 [Source:RGD Symbol%3BAcc:1562064]
