rn6_v1_chr12_-_17186679_17186679	0.840194	Hoxa4	ENSRNOT00000001730|Uncx|ENSRNOG00000001284|UNC homeobox [Source:RGD Symbol%3BAcc:69361]
rn6_v1_chr3_-_66417741_66417741	0.367101	Hoxa4	ENSRNOT00000007662|Neurod1|ENSRNOG00000005609|neuronal differentiation 1 [Source:RGD Symbol%3BAcc:3165]
rn6_v1_chr9_+_25410669_25410717	0.273369	Hoxa4	ENSRNOT00000030912|Tfap2b|ENSRNOG00000011823|transcription factor AP-2 beta [Source:RGD Symbol%3BAcc:1306321]	ENSRNOT00000090920|Tfap2b|ENSRNOG00000011823|transcription factor AP-2 beta [Source:RGD Symbol%3BAcc:1306321]
rn6_v1_chr7_+_144647587_144647587	0.215722	Hoxa4	ENSRNOT00000022398|Hoxc4|ENSRNOG00000016613|homeo box C4 [Source:RGD Symbol%3BAcc:1586210]
rn6_v1_chr2_+_206342066_206342066	0.179762	Hoxa4	ENSRNOT00000026556|Ptpn22|ENSRNOG00000019614|protein tyrosine phosphatase%2C non-receptor type 22 [Source:RGD Symbol%3BAcc:1307992]
rn6_v1_chr5_-_12526962_12526962	0.167779	Hoxa4	ENSRNOT00000092104|St18|ENSRNOG00000006200|suppression of tumorigenicity 18 [Source:RGD Symbol%3BAcc:708566]
rn6_v1_chrX_-_124464963_124465110	0.162879	Hoxa4	ENSRNOT00000036472|Tmem255a|ENSRNOG00000028085|transmembrane protein 255A [Source:RGD Symbol%3BAcc:727788]	ENSRNOT00000077697|Tmem255a|ENSRNOG00000028085|transmembrane protein 255A [Source:RGD Symbol%3BAcc:727788]
rn6_v1_chr3_+_95715193_95715193	0.14108	Hoxa4	ENSRNOT00000089525|Pax6|ENSRNOG00000004410|paired box 6 [Source:RGD Symbol%3BAcc:3258]
rn6_v1_chrX_+_158835811_158835811	0.120875	Hoxa4	ENSRNOT00000071888|Ints6l|ENSRNOG00000046662|integrator complex subunit 6 like [Source:MGI Symbol%3BAcc:MGI:2442593]	ENSRNOT00000080110|Ints6l|ENSRNOG00000046662|integrator complex subunit 6 like [Source:MGI Symbol%3BAcc:MGI:2442593]
rn6_v1_chr16_+_54332660_54332660	0.113977	Hoxa4	ENSRNOT00000037685|Mtus1|ENSRNOG00000010748|microtubule associated tumor suppressor 1 [Source:RGD Symbol%3BAcc:631381]
rn6_v1_chr3_+_56766475_56766475	0.111119	Hoxa4	ENSRNOT00000078819|Sp5|ENSRNOG00000054086|Sp5 transcription factor [Source:RGD Symbol%3BAcc:1308499]
rn6_v1_chrX_-_63165759_63165759	0.106992	Hoxa4	ENSRNOT00000076765|Zfx|ENSRNOG00000005624|zinc finger protein X-linked [Source:RGD Symbol%3BAcc:1562664]
rn6_v1_chr9_+_121831716_121831716	0.105206	Hoxa4	ENSRNOT00000056250|Yes1|ENSRNOG00000037227|YES proto-oncogene 1%2C Src family tyrosine kinase [Source:RGD Symbol%3BAcc:3977]	ENSRNOT00000056251|Yes1|ENSRNOG00000037227|YES proto-oncogene 1%2C Src family tyrosine kinase [Source:RGD Symbol%3BAcc:3977]
rn6_v1_chr1_-_163554839_163554839	0.101559	Hoxa4	ENSRNOT00000081509|Emsy|ENSRNOG00000015560|EMSY BRCA2-interacting transcriptional repressor [Source:RGD Symbol%3BAcc:1310712]
rn6_v1_chr4_-_82160240_82160240	0.0996722	Hoxa4	ENSRNOT00000038775|Hoxa4|ENSRNOG00000027365|homeo box A4 [Source:RGD Symbol%3BAcc:2814]	ENSRNOT00000058985|Hoxa4|ENSRNOG00000027365|homeo box A4 [Source:RGD Symbol%3BAcc:2814]
rn6_v1_chr2_+_207930796_207930796	0.0994837	Hoxa4	ENSRNOT00000047827|Kcnd3|ENSRNOG00000014686|potassium voltage-gated channel subfamily D member 3 [Source:RGD Symbol%3BAcc:68394]
rn6_v1_chr4_+_100166863_100166863	0.0959289	Hoxa4	ENSRNOT00000014505|Sftpb|ENSRNOG00000010761|surfactant protein B [Source:RGD Symbol%3BAcc:621700]
rn6_v1_chr16_+_50152008_50152008	0.0907357	Hoxa4	ENSRNOT00000019237|Klkb1|ENSRNOG00000014118|kallikrein B1 [Source:RGD Symbol%3BAcc:67382]
rn6_v1_chr19_-_26053762_26053762	0.0825297	Hoxa4	ENSRNOT00000004646|MAST1|ENSRNOG00000003469|microtubule associated serine/threonine kinase 1 [Source:RGD Symbol%3BAcc:631372]
rn6_v1_chr14_-_13058172_13058172	0.0808264	Hoxa4	ENSRNOT00000002746|Prdm8|ENSRNOG00000002004|PR/SET domain 8 [Source:RGD Symbol%3BAcc:1311628]	ENSRNOT00000071706|Prdm8|ENSRNOG00000002004|PR/SET domain 8 [Source:RGD Symbol%3BAcc:1311628]
rn6_v1_chr8_+_110982777_110982777	0.0776831	Hoxa4	ENSRNOT00000010992|Ky|ENSRNOG00000008210|kyphoscoliosis peptidase [Source:RGD Symbol%3BAcc:1305407]
rn6_v1_chr10_-_87286387_87286387	0.0760505	Hoxa4	ENSRNOT00000044206|Krt28|ENSRNOG00000011846|keratin 28 [Source:RGD Symbol%3BAcc:1309530]
rn6_v1_chr6_-_51018050_51018050	0.0743985	Hoxa4	ENSRNOT00000082691|Gpr22|ENSRNOG00000008423|G protein-coupled receptor 22 [Source:RGD Symbol%3BAcc:1310848]
rn6_v1_chr6_+_96834525_96834525	0.0708235	Hoxa4	ENSRNOT00000077935|Hif1a|ENSRNOG00000008292|hypoxia inducible factor 1 alpha subunit [Source:RGD Symbol%3BAcc:61928]
rn6_v1_chr1_-_33275540_33275540	0.0699621	Hoxa4	ENSRNOT00000017019|Irx2|ENSRNOG00000012742|iroquois homeobox 2 [Source:RGD Symbol%3BAcc:1309834]
rn6_v1_chr16_-_74700815_74700815	0.0692121	Hoxa4	ENSRNOT00000081297|Thsd1|ENSRNOG00000012108|thrombospondin type 1 domain containing 1 [Source:RGD Symbol%3BAcc:1306998]
rn6_v1_chr17_+_70262363_70262363	0.0691205	Hoxa4	ENSRNOT00000048933|Fam208b|ENSRNOG00000018011|family with sequence similarity 208%2C member B [Source:RGD Symbol%3BAcc:1564456]
rn6_v1_chr1_+_140998240_140998260	0.0684413	Hoxa4	ENSRNOT00000023506|Abhd2|ENSRNOG00000017120|abhydrolase domain containing 2 [Source:RGD Symbol%3BAcc:1311389]	ENSRNOT00000090897|Abhd2|ENSRNOG00000017120|abhydrolase domain containing 2 [Source:RGD Symbol%3BAcc:1311389]
rn6_v1_chr3_-_80601410_80601410	0.0677283	Hoxa4	ENSRNOT00000022841|Atg13|ENSRNOG00000016984|autophagy related 13 [Source:RGD Symbol%3BAcc:1310685]
rn6_v1_chr3_-_146396299_146396346	0.0661983	Hoxa4	ENSRNOT00000040188|Apmap|ENSRNOG00000006795|adipocyte plasma membrane associated protein [Source:RGD Symbol%3BAcc:1308874]	ENSRNOT00000008931|Apmap|ENSRNOG00000006795|adipocyte plasma membrane associated protein [Source:RGD Symbol%3BAcc:1308874]
rn6_v1_chrX_-_135419704_135419704	0.0631428	Hoxa4	ENSRNOT00000044435|Zfp280c|ENSRNOG00000006797|zinc finger protein 280C [Source:RGD Symbol%3BAcc:1564669]
rn6_v1_chr7_-_140172448_140172448	0.0629427	Hoxa4	ENSRNOT00000077672|LOC103692976|ENSRNOG00000055738|cyclin-T1-like [Source:RGD Symbol%3BAcc:9297474]
rn6_v1_chr2_+_2729829_2729829	0.0620593	Hoxa4	ENSRNOT00000017068|Spata9|ENSRNOG00000012770|spermatogenesis associated 9 [Source:RGD Symbol%3BAcc:1308291]
rn6_v1_chr5_+_116421894_116421900	0.0615434	Hoxa4	ENSRNOT00000080577|Nfia|ENSRNOG00000006966|nuclear factor I/A [Source:RGD Symbol%3BAcc:3170]	ENSRNOT00000086628|Nfia|ENSRNOG00000006966|nuclear factor I/A [Source:RGD Symbol%3BAcc:3170]	ENSRNOT00000004017|Nfia|ENSRNOG00000006966|nuclear factor I/A [Source:RGD Symbol%3BAcc:3170]
rn6_v1_chr2_+_196334626_196334631	0.059636	Hoxa4	ENSRNOT00000050914|Sema6c|ENSRNOG00000021101|semaphorin 6C [Source:RGD Symbol%3BAcc:3659]	ENSRNOT00000028645|Sema6c|ENSRNOG00000021101|semaphorin 6C [Source:RGD Symbol%3BAcc:3659]	ENSRNOT00000090729|Sema6c|ENSRNOG00000021101|semaphorin 6C [Source:RGD Symbol%3BAcc:3659]
rn6_v1_chr6_-_125723732_125723732	0.0583751	Hoxa4	ENSRNOT00000084815|Fbln5|ENSRNOG00000050539|fibulin 5 [Source:RGD Symbol%3BAcc:2594]
rn6_v1_chr6_-_51019407_51019407	0.0567488	Hoxa4	ENSRNOT00000011659|Gpr22|ENSRNOG00000008423|G protein-coupled receptor 22 [Source:RGD Symbol%3BAcc:1310848]
rn6_v1_chr6_-_67084234_67084234	0.0551763	Hoxa4	ENSRNOT00000050372|Nova1|ENSRNOG00000031440|NOVA alternative splicing regulator 1 [Source:RGD Symbol%3BAcc:621345]
rn6_v1_chr1_-_275882444_275882444	0.0550387	Hoxa4	ENSRNOT00000083215|Gpam|ENSRNOG00000015124|glycerol-3-phosphate acyltransferase%2C mitochondrial [Source:RGD Symbol%3BAcc:61847]
rn6_v1_chr6_-_8344574_8344574	0.0546706	Hoxa4	ENSRNOT00000009660|Prepl|ENSRNOG00000007326|prolyl endopeptidase-like [Source:RGD Symbol%3BAcc:1310143]
rn6_v1_chr15_+_11298478_11298478	0.0537705	Hoxa4	ENSRNOT00000007672|Lrrc3b|ENSRNOG00000005857|leucine rich repeat containing 3B [Source:RGD Symbol%3BAcc:1311897]
rn6_v1_chr11_-_1836897_1836897	0.0533027	Hoxa4	ENSRNOT00000050533|Zfp654|ENSRNOG00000029956|zinc finger protein 654 [Source:RGD Symbol%3BAcc:1308321]
rn6_v1_chr16_-_27472687_27472687	0.05297	Hoxa4	ENSRNOT00000046984|AABR07025074.1|ENSRNOG00000032550|
rn6_v1_chr3_-_154490851_154490851	0.0492449	Hoxa4	ENSRNOT00000017213|Tti1|ENSRNOG00000012880|TELO2 interacting protein 1 [Source:RGD Symbol%3BAcc:1562582]
rn6_v1_chr3_-_103745236_103745236	0.0488316	Hoxa4	ENSRNOT00000006876|Nutm1|ENSRNOG00000005111|NUT midline carcinoma%2C family member 1 [Source:RGD Symbol%3BAcc:1564529]
rn6_v1_chr13_-_98478327_98478327	0.0486576	Hoxa4	ENSRNOT00000030135|Coq8a|ENSRNOG00000043201|coenzyme Q8A [Source:RGD Symbol%3BAcc:1308245]
rn6_v1_chr10_+_97212432_97212432	0.0474549	Hoxa4	ENSRNOT00000088599|Axin2|ENSRNOG00000055010|axin 2 [Source:RGD Symbol%3BAcc:69259]
rn6_v1_chr2_-_33025271_33025271	0.0473411	Hoxa4	ENSRNOT00000074941|NEWGENE_1310139|ENSRNOG00000027002|microtubule associated serine/threonine kinase family member 4 [Source:RGD Symbol%3BAcc:9344213]
rn6_v1_chr9_-_54351339_54351339	0.0469737	Hoxa4	ENSRNOT00000080522|Stat1|ENSRNOG00000014079|signal transducer and activator of transcription 1 [Source:RGD Symbol%3BAcc:3771]
rn6_v1_chr1_+_100299626_100299635	0.0464769	Hoxa4	ENSRNOT00000092327|Shank1|ENSRNOG00000019207|SH3 and multiple ankyrin repeat domains 1 [Source:RGD Symbol%3BAcc:621011]	ENSRNOT00000044257|Shank1|ENSRNOG00000019207|SH3 and multiple ankyrin repeat domains 1 [Source:RGD Symbol%3BAcc:621011]
rn6_v1_chr13_-_89242443_89242443	0.0460625	Hoxa4	ENSRNOT00000029202|Atf6|ENSRNOG00000024632|activating transcription factor 6 [Source:RGD Symbol%3BAcc:1305471]
rn6_v1_chr11_+_66713888_66713888	0.0459278	Hoxa4	ENSRNOT00000003340|Fbxo40|ENSRNOG00000002459|F-box protein 40 [Source:RGD Symbol%3BAcc:1309781]
rn6_v1_chr11_-_4397361_4397361	0.0456129	Hoxa4	ENSRNOT00000046370|Cadm2|ENSRNOG00000030840|cell adhesion molecule 2 [Source:RGD Symbol%3BAcc:1305678]
rn6_v1_chr13_+_47454591_47454591	0.0450266	Hoxa4	ENSRNOT00000005791|LOC498222|ENSRNOG00000004341|similar to specifically androgen-regulated protein [Source:RGD Symbol%3BAcc:1565034]
rn6_v1_chr10_+_39850818_39850818	0.0447472	Hoxa4	ENSRNOT00000012671|Fnip1|ENSRNOG00000009104|folliculin interacting protein 1 [Source:RGD Symbol%3BAcc:2318339]
rn6_v1_chr16_+_60925093_60925093	0.0445286	Hoxa4	ENSRNOT00000015813|Tnks|ENSRNOG00000011625|tankyrase [Source:RGD Symbol%3BAcc:1308784]
rn6_v1_chr1_-_163611299_163611299	0.0435299	Hoxa4	ENSRNOT00000043788|Emsy|ENSRNOG00000015560|EMSY BRCA2-interacting transcriptional repressor [Source:RGD Symbol%3BAcc:1310712]
rn6_v1_chr6_+_8219385_8219385	0.0423652	Hoxa4	ENSRNOT00000040509|Ppm1b|ENSRNOG00000030667|protein phosphatase%2C Mg2+/Mn2+ dependent%2C 1B [Source:RGD Symbol%3BAcc:3374]
rn6_v1_chr4_-_183374195_183374195	0.0421491	Hoxa4	ENSRNOT00000073927|Caprin2|ENSRNOG00000047319|caprin family member 2 [Source:RGD Symbol%3BAcc:1593683]	ENSRNOT00000074740|Caprin2|ENSRNOG00000047319|caprin family member 2 [Source:RGD Symbol%3BAcc:1593683]	ENSRNOT00000070907|Caprin2|ENSRNOG00000047319|caprin family member 2 [Source:RGD Symbol%3BAcc:1593683]
rn6_v1_chr13_+_98311827_98311827	0.0411226	Hoxa4	ENSRNOT00000082844|Cdc42bpa|ENSRNOG00000002841|CDC42 binding protein kinase alpha [Source:RGD Symbol%3BAcc:621406]
rn6_v1_chr7_-_2941122_2941122	0.0396936	Hoxa4	ENSRNOT00000082107|Esyt1|ENSRNOG00000060753|extended synaptotagmin 1 [Source:RGD Symbol%3BAcc:3053]
rn6_v1_chrX_-_23246719_23246719	0.0393368	Hoxa4	ENSRNOT00000085588|AABR07037536.1|ENSRNOG00000056810|
rn6_v1_chr18_+_30820321_30820321	0.0385108	Hoxa4	ENSRNOT00000060472|Pcdhga3|ENSRNOG00000039461|protocadherin gamma subfamily A%2C 3 [Source:RGD Symbol%3BAcc:1598664]
rn6_v1_chr11_-_62451149_62451184	0.0372637	Hoxa4	ENSRNOT00000093686|Zbtb20|ENSRNOG00000056716|zinc finger and BTB domain containing 20 [Source:RGD Symbol%3BAcc:1560387]	ENSRNOT00000081443|Zbtb20|ENSRNOG00000056716|zinc finger and BTB domain containing 20 [Source:RGD Symbol%3BAcc:1560387]
rn6_v1_chr1_+_214664537_214664537	0.0367971	Hoxa4	ENSRNOT00000075002|AABR07006030.1|ENSRNOG00000046602|
rn6_v1_chr12_+_22451596_22451596	0.0362673	Hoxa4	ENSRNOT00000072838|Trip6|ENSRNOG00000048580|thyroid hormone receptor interactor 6 [Source:RGD Symbol%3BAcc:1583180]
rn6_v1_chr8_-_46675544_46675544	0.0361958	Hoxa4	ENSRNOT00000052293|Tecta|ENSRNOG00000031126|tectorin alpha [Source:RGD Symbol%3BAcc:1309824]
rn6_v1_chr2_+_252771017_252771017	0.0361019	Hoxa4	ENSRNOT00000075452|Ttll7|ENSRNOG00000031997|tubulin tyrosine ligase like 7 [Source:RGD Symbol%3BAcc:1566117]	ENSRNOT00000055318|Ttll7|ENSRNOG00000031997|tubulin tyrosine ligase like 7 [Source:RGD Symbol%3BAcc:1566117]
rn6_v1_chr16_+_8823872_8823872	0.0343191	Hoxa4	ENSRNOT00000027186|Drgx|ENSRNOG00000020045|dorsal root ganglia homeobox [Source:RGD Symbol%3BAcc:628616]
rn6_v1_chrX_+_157759624_157759624	0.033207	Hoxa4	ENSRNOT00000003192|LOC686087|ENSRNOG00000002332|similar to motile sperm domain containing 1 [Source:RGD Symbol%3BAcc:1586609]
rn6_v1_chr16_-_48437223_48437242	0.0309445	Hoxa4	ENSRNOT00000013005|Enpp6|ENSRNOG00000009660|ectonucleotide pyrophosphatase/phosphodiesterase 6 [Source:RGD Symbol%3BAcc:1311645]	ENSRNOT00000059401|Enpp6|ENSRNOG00000009660|ectonucleotide pyrophosphatase/phosphodiesterase 6 [Source:RGD Symbol%3BAcc:1311645]
rn6_v1_chr9_-_16581078_16581078	0.0294641	Hoxa4	ENSRNOT00000022582|Pex6|ENSRNOG00000016655|peroxisomal biogenesis factor 6 [Source:RGD Symbol%3BAcc:621637]
rn6_v1_chr1_+_1784078_1784078	0.0285658	Hoxa4	ENSRNOT00000020098|Lats1|ENSRNOG00000014916|large tumor suppressor kinase 1 [Source:RGD Symbol%3BAcc:1564085]
rn6_v1_chr9_-_81566642_81566642	0.0282405	Hoxa4	ENSRNOT00000080345|Aamp|ENSRNOG00000014399|angio-associated%2C migratory cell protein [Source:RGD Symbol%3BAcc:1306281]
rn6_v1_chr1_+_154606490_154606490	0.0271595	Hoxa4	ENSRNOT00000024095|Ccdc89|ENSRNOG00000022766|coiled-coil domain containing 89 [Source:RGD Symbol%3BAcc:1305335]
rn6_v1_chr12_+_49761120_49761120	0.0268024	Hoxa4	ENSRNOT00000070961|Myo18b|ENSRNOG00000048430|myosin XVIIIb [Source:RGD Symbol%3BAcc:1594542]
rn6_v1_chr12_-_5685448_5685448	0.0265942	Hoxa4	ENSRNOT00000077167|Fry|ENSRNOG00000000894|FRY microtubule binding protein [Source:RGD Symbol%3BAcc:1307034]
rn6_v1_chr3_-_71798531_71798531	0.0264206	Hoxa4	ENSRNOT00000088170|Calcrl|ENSRNOG00000054695|calcitonin receptor like receptor [Source:RGD Symbol%3BAcc:2255]
rn6_v1_chr6_+_86823684_86823688	0.0257789	Hoxa4	ENSRNOT00000086081|Fancm|ENSRNOG00000056721|Fanconi anemia%2C complementation group M [Source:RGD Symbol%3BAcc:1307897]	ENSRNOT00000006574|Fancm|ENSRNOG00000056721|Fanconi anemia%2C complementation group M [Source:RGD Symbol%3BAcc:1307897]
rn6_v1_chr14_-_72025137_72025137	0.02544	Hoxa4	ENSRNOT00000080604|C1qtnf7|ENSRNOG00000005094|C1q and tumor necrosis factor related protein 7 [Source:RGD Symbol%3BAcc:1306978]
rn6_v1_chr17_-_44643362_44643362	0.0248053	Hoxa4	ENSRNOT00000091041|Zfp184|ENSRNOG00000061612|zinc finger protein 184 [Source:RGD Symbol%3BAcc:1304798]
rn6_v1_chr18_+_30527705_30527705	0.0241081	Hoxa4	ENSRNOT00000027168|Pcdhb14|ENSRNOG00000020059|protocadherin beta 14 [Source:RGD Symbol%3BAcc:1307591]
rn6_v1_chr10_+_55687050_55687050	0.0240552	Hoxa4	ENSRNOT00000057136|Per1|ENSRNOG00000007387|period circadian clock 1 [Source:RGD Symbol%3BAcc:727863]
rn6_v1_chr8_-_130429132_130429132	0.0237674	Hoxa4	ENSRNOT00000026261|Hhatl|ENSRNOG00000019404|hedgehog acyltransferase-like [Source:RGD Symbol%3BAcc:1311911]
rn6_v1_chrX_+_76083549_76083549	0.0227837	Hoxa4	ENSRNOT00000003573|Magee1|ENSRNOG00000002660|MAGE family member E1 [Source:RGD Symbol%3BAcc:1560259]
rn6_v1_chr9_+_94316717_94316717	0.0227056	Hoxa4	ENSRNOT00000077005|Eif4e2|ENSRNOG00000019634|eukaryotic translation initiation factor 4E family member 2 [Source:RGD Symbol%3BAcc:1307790]	ENSRNOT00000092534|Eif4e2|ENSRNOG00000019634|eukaryotic translation initiation factor 4E family member 2 [Source:RGD Symbol%3BAcc:1307790]
rn6_v1_chr7_+_144080614_144080614	0.022361	Hoxa4	ENSRNOT00000077687|Pcbp2|ENSRNOG00000036852|poly(rC) binding protein 2 [Source:RGD Symbol%3BAcc:1309626]
rn6_v1_chr17_-_76250537_76250537	0.0219936	Hoxa4	ENSRNOT00000092693|Upf2|ENSRNOG00000023593|UPF2 regulator of nonsense transcripts homolog (yeast) [Source:RGD Symbol%3BAcc:1309178]
rn6_v1_chr4_-_135069970_135069970	0.0207727	Hoxa4	ENSRNOT00000008221|Cntn3|ENSRNOG00000006144|contactin 3 [Source:RGD Symbol%3BAcc:3253]
rn6_v1_chr2_+_149315189_149315189	0.0200034	Hoxa4	ENSRNOT00000082464|Med12l|ENSRNOG00000010680|mediator complex subunit 12-like [Source:RGD Symbol%3BAcc:1592212]
rn6_v1_chr2_-_177924970_177924970	0.018928	Hoxa4	ENSRNOT00000029340|Rapgef2|ENSRNOG00000021581|Rap guanine nucleotide exchange factor 2 [Source:RGD Symbol%3BAcc:1306434]
rn6_v1_chr5_+_148320438_148320438	0.0185952	Hoxa4	ENSRNOT00000018742|Pef1|ENSRNOG00000013972|penta-EF hand domain containing 1 [Source:RGD Symbol%3BAcc:1359536]
rn6_v1_chr18_+_64008048_64008048	0.018077	Hoxa4	ENSRNOT00000083414|Ldlrad4|ENSRNOG00000016879|low density lipoprotein receptor class A domain containing 4 [Source:RGD Symbol%3BAcc:1587105]
rn6_v1_chrX_+_9436707_9436707	0.0175666	Hoxa4	ENSRNOT00000004187|Cask|ENSRNOG00000003054|calcium/calmodulin dependent serine protein kinase [Source:RGD Symbol%3BAcc:62004]
rn6_v1_chr10_-_65502936_65502936	0.0171248	Hoxa4	ENSRNOT00000089615|Supt6h|ENSRNOG00000012240|SPT6 homolog%2C histone chaperone [Source:RGD Symbol%3BAcc:1309290]
rn6_v1_chr4_-_162498052_162498052	0.0168023	Hoxa4	ENSRNOT00000066349|LOC100360260|ENSRNOG00000030902|chromobox homolog 3-like [Source:RGD Symbol%3BAcc:2322491]
rn6_v1_chr4_+_34237762_34237762	0.0167774	Hoxa4	ENSRNOT00000084163|Mios|ENSRNOG00000007924|meiosis regulator for oocyte development [Source:RGD Symbol%3BAcc:1308432]
rn6_v1_chrX_+_70440059_70440059	0.0163733	Hoxa4	ENSRNOT00000003946|Arr3|ENSRNOG00000002904|arrestin 3 [Source:RGD Symbol%3BAcc:621385]
rn6_v1_chr5_-_150704117_150704117	0.0150609	Hoxa4	ENSRNOT00000067455|Sesn2|ENSRNOG00000042785|sestrin 2 [Source:RGD Symbol%3BAcc:1566319]
rn6_v1_chr2_-_118882562_118882562	0.0149077	Hoxa4	ENSRNOT00000058860|Kcnmb3|ENSRNOG00000027836|potassium calcium-activated channel subfamily M regulatory beta subunit 3 [Source:RGD Symbol%3BAcc:1311852]
rn6_v1_chr1_+_224927764_224927764	0.0147528	Hoxa4	ENSRNOT00000050814|AC099294.1|ENSRNOG00000029315|
rn6_v1_chr2_+_68821004_68821004	0.0134408	Hoxa4	ENSRNOT00000083713|Egf|ENSRNOG00000053979|epidermal growth factor [Source:RGD Symbol%3BAcc:2542]
rn6_v1_chr5_-_12199283_12199283	0.013392	Hoxa4	ENSRNOT00000007769|Pcmtd1|ENSRNOG00000005730|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 [Source:RGD Symbol%3BAcc:1586096]
rn6_v1_chr16_-_48692476_48692476	0.0133337	Hoxa4	ENSRNOT00000013118|Irf2|ENSRNOG00000009824|interferon regulatory factor 2 [Source:RGD Symbol%3BAcc:1304922]
rn6_v1_chr7_-_132984110_132984110	0.0122878	Hoxa4	ENSRNOT00000046626|Hmgb1-ps3|ENSRNOG00000032420|high mobility group box 1%2C pseudogene 3 [Source:RGD Symbol%3BAcc:1588759]
rn6_v1_chr4_+_183896303_183896303	0.0115952	Hoxa4	ENSRNOT00000055437|RGD1309621|ENSRNOG00000036913|similar to hypothetical protein FLJ10652 [Source:RGD Symbol%3BAcc:1309621]
rn6_v1_chr18_+_29386809_29386906	0.0114168	Hoxa4	ENSRNOT00000082079|Eif4ebp3|ENSRNOG00000030247|eukaryotic translation initiation factor 4E binding protein 3 [Source:RGD Symbol%3BAcc:2324556]	ENSRNOT00000024825|Eif4ebp3|ENSRNOG00000030247|eukaryotic translation initiation factor 4E binding protein 3 [Source:RGD Symbol%3BAcc:2324556]
rn6_v1_chr1_-_192057612_192057612	0.0109309	Hoxa4	ENSRNOT00000024471|Ndufab1|ENSRNOG00000018129|NADH:ubiquinone oxidoreductase subunit AB1 [Source:RGD Symbol%3BAcc:1305619]
rn6_v1_chr15_-_27819376_27819376	0.0108568	Hoxa4	ENSRNOT00000067400|A930018M24Rik|ENSRNOG00000042516|RIKEN cDNA A930018M24 gene [Source:MGI Symbol%3BAcc:MGI:2686053]
rn6_v1_chr8_-_116438038_116438038	0.0106946	Hoxa4	ENSRNOT00000023791|Gnat1|ENSRNOG00000017589|G protein subunit alpha transducin 1 [Source:RGD Symbol%3BAcc:1304683]
rn6_v1_chr14_-_115391652_115391652	0.0106182	Hoxa4	ENSRNOT00000002094|Chac2|ENSRNOG00000001531|ChaC cation transport regulator 2 [Source:RGD Symbol%3BAcc:1309120]
rn6_v1_chr5_-_711033_711033	0.0104505	Hoxa4	ENSRNOT00000024199|Crispld1|ENSRNOG00000017773|cysteine-rich secretory protein LCCL domain containing 1 [Source:RGD Symbol%3BAcc:1564813]
rn6_v1_chr20_+_3558827_3558827	0.0101201	Hoxa4	ENSRNOT00000088130|Ddr1|ENSRNOG00000057125|discoidin domain receptor tyrosine kinase 1 [Source:RGD Symbol%3BAcc:2252]
rn6_v1_chr8_+_103938520_103938520	0.00968435	Hoxa4	ENSRNOT00000067835|Gk5|ENSRNOG00000010942|glycerol kinase 5 (putative) [Source:RGD Symbol%3BAcc:1311223]
rn6_v1_chr2_+_38230757_38230757	0.00936697	Hoxa4	ENSRNOT00000048598|RGD1564606|ENSRNOG00000029670|similar to 60S ribosomal protein L23a [Source:RGD Symbol%3BAcc:1564606]
rn6_v1_chr10_+_82032656_82032656	0.00931212	Hoxa4	ENSRNOT00000067751|Ankrd40|ENSRNOG00000002935|ankyrin repeat domain 40 [Source:RGD Symbol%3BAcc:1594678]
rn6_v1_chr1_+_154446156_154446156	0.00899736	Hoxa4	ENSRNOT00000093052|Picalm|ENSRNOG00000018322|phosphatidylinositol binding clathrin assembly protein [Source:RGD Symbol%3BAcc:621054]
rn6_v1_chr4_+_66091641_66091641	0.00852121	Hoxa4	ENSRNOT00000043147|AABR07060287.1|ENSRNOG00000049746|
rn6_v1_chr5_-_105582375_105582375	0.00839866	Hoxa4	ENSRNOT00000083373|Slc24a2|ENSRNOG00000008169|solute carrier family 24 member 2 [Source:RGD Symbol%3BAcc:628650]
rn6_v1_chr6_+_80218880_80218880	0.00778327	Hoxa4	ENSRNOT00000006995|Mia2|ENSRNOG00000005101|melanoma inhibitory activity 2 [Source:RGD Symbol%3BAcc:6488546]
rn6_v1_chr5_+_25168295_25168295	0.00743606	Hoxa4	ENSRNOT00000020245|Fsbp|ENSRNOG00000015004|fibrinogen silencer binding protein [Source:RGD Symbol%3BAcc:7611658]
rn6_v1_chr6_+_73358112_73358112	0.0074232	Hoxa4	ENSRNOT00000041373|Arhgap5|ENSRNOG00000004696|Rho GTPase activating protein 5 [Source:RGD Symbol%3BAcc:1308507]
rn6_v1_chr20_-_6234703_6234703	0.00727118	Hoxa4	ENSRNOT00000092453|Stk38|ENSRNOG00000000519|serine/threonine kinase 38 [Source:RGD Symbol%3BAcc:1309455]
rn6_v1_chr14_-_45165207_45165207	0.00704002	Hoxa4	ENSRNOT00000002960|Klf3|ENSRNOG00000002163|Kruppel like factor 3 [Source:RGD Symbol%3BAcc:1593290]
rn6_v1_chr1_-_267463694_267463705	0.00638806	Hoxa4	ENSRNOT00000084851|Col17a1|ENSRNOG00000012110|collagen type XVII alpha 1 chain [Source:RGD Symbol%3BAcc:1311130]	ENSRNOT00000016645|Col17a1|ENSRNOG00000012110|collagen type XVII alpha 1 chain [Source:RGD Symbol%3BAcc:1311130]
rn6_v1_chr2_-_5577369_5577369	0.00632216	Hoxa4	ENSRNOT00000093420|Nr2f1|ENSRNOG00000014795|nuclear receptor subfamily 2%2C group F%2C member 1 [Source:RGD Symbol%3BAcc:621682]
rn6_v1_chr11_+_72044096_72044096	0.00543868	Hoxa4	ENSRNOT00000034757|Senp5|ENSRNOG00000024794|SUMO1/sentrin specific peptidase 5 [Source:RGD Symbol%3BAcc:1304604]
rn6_v1_chr8_+_94686938_94686938	0.00542667	Hoxa4	ENSRNOT00000013285|Ripply2|ENSRNOG00000010004|ripply transcriptional repressor 2 [Source:RGD Symbol%3BAcc:1308746]
rn6_v1_chr1_-_174620064_174620064	0.00525958	Hoxa4	ENSRNOT00000016224|Tmem41b|ENSRNOG00000010752|transmembrane protein 41B [Source:RGD Symbol%3BAcc:1310870]
rn6_v1_chrX_-_13279082_13279099	0.00458895	Hoxa4	ENSRNOT00000051898|Tspan7|ENSRNOG00000003229|tetraspanin 7 [Source:RGD Symbol%3BAcc:1589725]	ENSRNOT00000060857|Tspan7|ENSRNOG00000003229|tetraspanin 7 [Source:RGD Symbol%3BAcc:1589725]
rn6_v1_chr10_-_87248572_87248632	0.0044849	Hoxa4	ENSRNOT00000066637|Krt26|ENSRNOG00000033617|keratin 26 [Source:RGD Symbol%3BAcc:1303322]	ENSRNOT00000085677|Krt26|ENSRNOG00000033617|keratin 26 [Source:RGD Symbol%3BAcc:1303322]
rn6_v1_chr4_-_181348799_181348799	0.00444743	Hoxa4	ENSRNOT00000033743|LOC690784|ENSRNOG00000026864|hypothetical protein LOC690783 [Source:RGD Symbol%3BAcc:1592184]
rn6_v1_chr9_-_74048244_74048244	0.00438845	Hoxa4	ENSRNOT00000018293|Lancl1|ENSRNOG00000013557|LanC like 1 [Source:RGD Symbol%3BAcc:69416]
rn6_v1_chr7_+_12619774_12619774	0.00367826	Hoxa4	ENSRNOT00000015257|Med16|ENSRNOG00000011315|mediator complex subunit 16 [Source:RGD Symbol%3BAcc:1308001]
rn6_v1_chr10_-_87529599_87529599	0.00321251	Hoxa4	ENSRNOT00000074099|Krtap2-1|ENSRNOG00000060941|keratin associated protein 2-1 [Source:RGD Symbol%3BAcc:1561281]
rn6_v1_chr1_+_225037737_225037737	0.00319249	Hoxa4	ENSRNOT00000077959|Bscl2|ENSRNOG00000052393|BSCL2%2C seipin lipid droplet biogenesis associated [Source:RGD Symbol%3BAcc:1308135]
rn6_v1_chr18_+_30509393_30509393	0.00317796	Hoxa4	ENSRNOT00000043846|Pcdhb12|ENSRNOG00000033719|protocadherin beta 12 [Source:RGD Symbol%3BAcc:3266]
rn6_v1_chrX_-_42329232_42329232	0.00307988	Hoxa4	ENSRNOT00000045705|LOC100361934|ENSRNOG00000034182|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4 [Source:RGD Symbol%3BAcc:2319146]
rn6_v1_chr2_-_31753528_31753528	0.00218228	Hoxa4	ENSRNOT00000075057|Pik3r1|ENSRNOG00000018903|phosphoinositide-3-kinase regulatory subunit 1 [Source:RGD Symbol%3BAcc:3329]
rn6_v1_chr10_+_78111050_78111050	0.00217684	Hoxa4	ENSRNOT00000079364|Cox11|ENSRNOG00000052096|COX11 cytochrome c oxidase copper chaperone [Source:RGD Symbol%3BAcc:1309822]
rn6_v1_chr4_+_129574264_129574264	0.00098705	Hoxa4	ENSRNOT00000010185|Arl6ip5|ENSRNOG00000006818|ADP-ribosylation factor like GTPase 6 interacting protein 5 [Source:RGD Symbol%3BAcc:708572]
rn6_v1_chr3_-_63836017_63836017	0.000700754	Hoxa4	ENSRNOT00000030978|AABR07052585.1|ENSRNOG00000022637|
rn6_v1_chr19_+_56803382_56803382	0.000337458	Hoxa4	ENSRNOT00000036042|Urb2|ENSRNOG00000026853|URB2 ribosome biogenesis 2 homolog (S. cerevisiae) [Source:RGD Symbol%3BAcc:1307980]
