rn6_v1_chr16_-_14360555_14360555	0.439671	Hoxa9_Hoxb9	ENSRNOT00000065460|LOC290595|ENSRNOG00000043342|hypothetical gene supported by AF152002 [Source:RGD Symbol%3BAcc:1566160]
rn6_v1_chr14_+_39368530_39368530	0.244317	Hoxa9_Hoxb9	ENSRNOT00000084367|Cox7b2|ENSRNOG00000057953|cytochrome c oxidase subunit 7B2 [Source:RGD Symbol%3BAcc:2319120]
rn6_v1_chr9_-_7891514_7891514	0.166361	Hoxa9_Hoxb9	ENSRNOT00000072684|Pot1b|ENSRNOG00000047439|protection of telomeres 1B [Source:RGD Symbol%3BAcc:1582873]
rn6_v1_chr6_+_93563446_93563446	0.146963	Hoxa9_Hoxb9	ENSRNOT00000050558|LOC690035|ENSRNOG00000008244|similar to Protein KIAA0586 [Source:RGD Symbol%3BAcc:1585176]	ENSRNOT00000011056|LOC690035|ENSRNOG00000008244|similar to Protein KIAA0586 [Source:RGD Symbol%3BAcc:1585176]
rn6_v1_chr20_-_3401273_3401315	0.135038	Hoxa9_Hoxb9	ENSRNOT00000089257|Nrm|ENSRNOG00000000818|nurim (nuclear envelope membrane protein) [Source:RGD Symbol%3BAcc:1302966]	ENSRNOT00000078451|Nrm|ENSRNOG00000000818|nurim (nuclear envelope membrane protein) [Source:RGD Symbol%3BAcc:1302966]	ENSRNOT00000001085|Nrm|ENSRNOG00000000818|nurim (nuclear envelope membrane protein) [Source:RGD Symbol%3BAcc:1302966]
rn6_v1_chr9_+_66888393_66888393	0.133809	Hoxa9_Hoxb9	ENSRNOT00000023536|Carf|ENSRNOG00000017491|calcium responsive transcription factor [Source:RGD Symbol%3BAcc:1306822]
rn6_v1_chr4_-_129515435_129515435	0.130179	Hoxa9_Hoxb9	ENSRNOT00000039353|Eogt|ENSRNOG00000024533|EGF domain specific O-linked N-acetylglucosamine transferase [Source:RGD Symbol%3BAcc:1359357]
rn6_v1_chr2_-_231409496_231409496	0.125015	Hoxa9_Hoxb9	ENSRNOT00000055615|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]	ENSRNOT00000015386|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]	ENSRNOT00000068415|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]
rn6_v1_chr4_-_22424862_22424862	0.11562	Hoxa9_Hoxb9	ENSRNOT00000082359|Abcb1a|ENSRNOG00000008012|ATP binding cassette subfamily B member 1A [Source:RGD Symbol%3BAcc:619951]
rn6_v1_chr2_-_231409988_231409988	0.113255	Hoxa9_Hoxb9	ENSRNOT00000080637|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]	ENSRNOT00000037255|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]	ENSRNOT00000074002|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]
rn6_v1_chr9_-_95108739_95108739	0.1048	Hoxa9_Hoxb9	ENSRNOT00000070819|Usp40|ENSRNOG00000018395|ubiquitin specific peptidase 40 [Source:RGD Symbol%3BAcc:1309613]
rn6_v1_chr8_-_69466618_69466618	0.104783	Hoxa9_Hoxb9	ENSRNOT00000042925|Ids|ENSRNOG00000001465|iduronate 2-sulfatase [Source:MGI Symbol%3BAcc:MGI:96417]
rn6_v1_chr3_-_61488696_61488696	0.103846	Hoxa9_Hoxb9	ENSRNOT00000083045|Lnpk|ENSRNOG00000001593|lunapark%2C ER junction formation factor [Source:RGD Symbol%3BAcc:1312042]
rn6_v1_chr2_+_23289374_23289391	0.101396	Hoxa9_Hoxb9	ENSRNOT00000090666|Dmgdh|ENSRNOG00000023588|dimethylglycine dehydrogenase [Source:RGD Symbol%3BAcc:620453]	ENSRNOT00000032783|Dmgdh|ENSRNOG00000023588|dimethylglycine dehydrogenase [Source:RGD Symbol%3BAcc:620453]
rn6_v1_chr10_+_106712127_106712127	0.0961946	Hoxa9_Hoxb9	ENSRNOT00000040629|Tnrc6c|ENSRNOG00000022395|trinucleotide repeat containing 6C [Source:RGD Symbol%3BAcc:1310027]
rn6_v1_chr1_+_234252757_234252757	0.0960466	Hoxa9_Hoxb9	ENSRNOT00000091814|Rorb|ENSRNOG00000013413|RAR-related orphan receptor B [Source:RGD Symbol%3BAcc:1306778]
rn6_v1_chr3_-_60166013_60166013	0.0951198	Hoxa9_Hoxb9	ENSRNOT00000024922|Wipf1|ENSRNOG00000018406|WAS/WASL interacting protein family%2C member 1 [Source:RGD Symbol%3BAcc:620887]
rn6_v1_chr9_+_66889028_66889028	0.0853648	Hoxa9_Hoxb9	ENSRNOT00000087194|Carf|ENSRNOG00000017491|calcium responsive transcription factor [Source:RGD Symbol%3BAcc:1306822]
rn6_v1_chr16_+_22361998_22361998	0.0847685	Hoxa9_Hoxb9	ENSRNOT00000016193|Slc18a1|ENSRNOG00000011992|solute carrier family 18 member A1 [Source:RGD Symbol%3BAcc:3693]
rn6_v1_chr17_+_45078556_45078556	0.0820854	Hoxa9_Hoxb9	ENSRNOT00000088280|Zfp192|ENSRNOG00000053635|zinc finger protein 192 [Source:RGD Symbol%3BAcc:1308983]
rn6_v1_chr18_+_30864216_30864216	0.081544	Hoxa9_Hoxb9	ENSRNOT00000027015|Pcdhga7|ENSRNOG00000027290|protocadherin gamma subfamily A%2C 7 [Source:RGD Symbol%3BAcc:1305108]
rn6_v1_chr9_+_65534704_65534704	0.0794634	Hoxa9_Hoxb9	ENSRNOT00000016730|Cflar|ENSRNOG00000012473|CASP8 and FADD-like apoptosis regulator [Source:RGD Symbol%3BAcc:620847]
rn6_v1_chr1_-_198900375_198900375	0.078919	Hoxa9_Hoxb9	ENSRNOT00000024969|Zfp689|ENSRNOG00000018877|zinc finger protein 689 [Source:RGD Symbol%3BAcc:628696]
rn6_v1_chr12_+_6403940_6403940	0.0785012	Hoxa9_Hoxb9	ENSRNOT00000083484|B3glct|ENSRNOG00000061346|beta 3-glucosyltransferase [Source:RGD Symbol%3BAcc:1588723]
rn6_v1_chr10_+_65552897_65552897	0.0776909	Hoxa9_Hoxb9	ENSRNOT00000056217|Spag5|ENSRNOG00000037214|sperm associated antigen 5 [Source:RGD Symbol%3BAcc:620152]
rn6_v1_chr18_-_75207306_75207306	0.0771484	Hoxa9_Hoxb9	ENSRNOT00000021717|Setbp1|ENSRNOG00000016208|SET binding protein 1 [Source:RGD Symbol%3BAcc:1306229]
rn6_v1_chr17_-_53713408_53713408	0.0768966	Hoxa9_Hoxb9	ENSRNOT00000022445|LOC100912163|ENSRNOG00000016391|AT-rich interactive domain-containing protein 4B-like [Source:RGD Symbol%3BAcc:6488837]
rn6_v1_chr16_+_31734944_31734944	0.0765096	Hoxa9_Hoxb9	ENSRNOT00000059673|Palld|ENSRNOG00000010107|palladin%2C cytoskeletal associated protein [Source:RGD Symbol%3BAcc:2322545]
rn6_v1_chr5_-_154965027_154965171	0.0757823	Hoxa9_Hoxb9	ENSRNOT00000080881|Kdm1a|ENSRNOG00000022372|lysine demethylase 1A [Source:RGD Symbol%3BAcc:1562975]	ENSRNOT00000055992|Kdm1a|ENSRNOG00000022372|lysine demethylase 1A [Source:RGD Symbol%3BAcc:1562975]
rn6_v1_chr14_+_69800156_69800156	0.0733821	Hoxa9_Hoxb9	ENSRNOT00000072746|Lcorl|ENSRNOG00000003787|ligand dependent nuclear receptor corepressor-like [Source:RGD Symbol%3BAcc:1561241]
rn6_v1_chr2_+_197715761_197715761	0.0724882	Hoxa9_Hoxb9	ENSRNOT00000083069|Golph3l|ENSRNOG00000047620|golgi phosphoprotein 3-like [Source:RGD Symbol%3BAcc:1359281]
rn6_v1_chr9_+_66058047_66058047	0.0723837	Hoxa9_Hoxb9	ENSRNOT00000071819|Cdk15|ENSRNOG00000022899|cyclin-dependent kinase 15 [Source:RGD Symbol%3BAcc:1306205]
rn6_v1_chr12_+_19231092_19231092	0.0723665	Hoxa9_Hoxb9	ENSRNOT00000045379|Zkscan1|ENSRNOG00000001335|zinc finger with KRAB and SCAN domains 1 [Source:RGD Symbol%3BAcc:1560616]
rn6_v1_chrX_-_70978714_70978714	0.071747	Hoxa9_Hoxb9	ENSRNOT00000076336|Slc7a3|ENSRNOG00000004133|solute carrier family 7 member 3 [Source:RGD Symbol%3BAcc:68342]
rn6_v1_chr20_+_41266566_41266566	0.0698291	Hoxa9_Hoxb9	ENSRNOT00000000653|Frk|ENSRNOG00000000543|fyn-related Src family tyrosine kinase [Source:RGD Symbol%3BAcc:621423]
rn6_v1_chr10_-_58771908_58771908	0.0696218	Hoxa9_Hoxb9	ENSRNOT00000018808|RGD1304728|ENSRNOG00000014027|similar to 4933427D14Rik protein [Source:RGD Symbol%3BAcc:1304728]
rn6_v1_chr2_-_31753528_31753528	0.0687108	Hoxa9_Hoxb9	ENSRNOT00000075057|Pik3r1|ENSRNOG00000018903|phosphoinositide-3-kinase regulatory subunit 1 [Source:RGD Symbol%3BAcc:3329]
rn6_v1_chr3_+_108795235_108795235	0.0665252	Hoxa9_Hoxb9	ENSRNOT00000007028|Spred1|ENSRNOG00000005209|sprouty-related%2C EVH1 domain containing 1 [Source:RGD Symbol%3BAcc:1308735]
rn6_v1_chr14_-_20920286_20920286	0.0647114	Hoxa9_Hoxb9	ENSRNOT00000004391|Slc4a4|ENSRNOG00000003134|solute carrier family 4 member 4 [Source:RGD Symbol%3BAcc:68936]
rn6_v1_chr2_+_231941794_231941794	0.0634668	Hoxa9_Hoxb9	ENSRNOT00000091475|AABR07013288.4|ENSRNOG00000053387|
rn6_v1_chr16_-_3762877_3762877	0.0611602	Hoxa9_Hoxb9	ENSRNOT00000052224|Duxbl1|ENSRNOG00000025408|double homeobox B-like 1 [Source:RGD Symbol%3BAcc:1311053]
rn6_v1_chr1_+_61786900_61786900	0.0604873	Hoxa9_Hoxb9	ENSRNOT00000090287|AABR07001905.1|ENSRNOG00000057250|
rn6_v1_chr3_+_9366053_9366053	0.0596879	Hoxa9_Hoxb9	ENSRNOT00000073999|Fibcd1l1|ENSRNOG00000050844|fibrinogen C domain containing 1-like 1 [Source:RGD Symbol%3BAcc:9301596]
rn6_v1_chr15_-_93748742_93748742	0.0594025	Hoxa9_Hoxb9	ENSRNOT00000093370|Mycbp2|ENSRNOG00000010479|MYC binding protein 2%2C E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:1312048]
rn6_v1_chr9_-_52238564_52238564	0.0590804	Hoxa9_Hoxb9	ENSRNOT00000005073|Col5a2|ENSRNOG00000003736|collagen type V alpha 2 chain [Source:RGD Symbol%3BAcc:70921]
rn6_v1_chr6_-_91250138_91250138	0.0587362	Hoxa9_Hoxb9	ENSRNOT00000052408|LOC100911256|ENSRNOG00000049104|ninein-like [Source:RGD Symbol%3BAcc:6493757]
rn6_v1_chr7_-_101138860_101138860	0.0570123	Hoxa9_Hoxb9	ENSRNOT00000077137|AABR07058124.4|ENSRNOG00000055178|
rn6_v1_chr2_+_55835151_55835151	0.0562322	Hoxa9_Hoxb9	ENSRNOT00000018634|Fyb|ENSRNOG00000013886|FYN binding protein [Source:RGD Symbol%3BAcc:1563421]
rn6_v1_chr15_-_61648267_61648267	0.0562134	Hoxa9_Hoxb9	ENSRNOT00000071805|Naa16|ENSRNOG00000045863|N(alpha)-acetyltransferase 16%2C NatA auxiliary subunit [Source:RGD Symbol%3BAcc:1584324]
rn6_v1_chr7_+_44146237_44146237	0.0557128	Hoxa9_Hoxb9	ENSRNOT00000058842|Rassf9|ENSRNOG00000038574|Ras association domain family member 9 [Source:RGD Symbol%3BAcc:621329]
rn6_v1_chr1_-_87825333_87825333	0.0552736	Hoxa9_Hoxb9	ENSRNOT00000072689|Zfp74|ENSRNOG00000046937|zinc finger protein 74 [Source:RGD Symbol%3BAcc:1563223]
rn6_v1_chr10_-_16731898_16731898	0.0500175	Hoxa9_Hoxb9	ENSRNOT00000028186|Crebrf|ENSRNOG00000020769|CREB3 regulatory factor [Source:RGD Symbol%3BAcc:1310862]
rn6_v1_chr10_-_70337532_70337532	0.0493383	Hoxa9_Hoxb9	ENSRNOT00000055963|Slfn13|ENSRNOG00000021412|schlafen family member 13 [Source:RGD Symbol%3BAcc:1359139]
rn6_v1_chr12_+_51960262_51960262	0.0486031	Hoxa9_Hoxb9	ENSRNOT00000084214|Ep400|ENSRNOG00000037483|E1A binding protein p400 [Source:RGD Symbol%3BAcc:1304733]
rn6_v1_chr1_+_99616447_99616447	0.0470625	Hoxa9_Hoxb9	ENSRNOT00000029197|Klk14|ENSRNOG00000033706|kallikrein related-peptidase 14 [Source:RGD Symbol%3BAcc:1308606]
rn6_v1_chr2_+_22910236_22910236	0.0461489	Hoxa9_Hoxb9	ENSRNOT00000078266|Homer1|ENSRNOG00000047014|homer scaffolding protein 1 [Source:RGD Symbol%3BAcc:628725]
rn6_v1_chr20_-_6257604_6257604	0.0456465	Hoxa9_Hoxb9	ENSRNOT00000092489|Stk38|ENSRNOG00000000519|serine/threonine kinase 38 [Source:RGD Symbol%3BAcc:1309455]
rn6_v1_chr8_+_82037977_82037977	0.045289	Hoxa9_Hoxb9	ENSRNOT00000082288|Myo5a|ENSRNOG00000058866|myosin VA [Source:RGD Symbol%3BAcc:3143]
rn6_v1_chr14_+_8080275_8080277	0.044841	Hoxa9_Hoxb9	ENSRNOT00000065965|Mapk10|ENSRNOG00000002079|mitogen activated protein kinase 10 [Source:RGD Symbol%3BAcc:3663]	ENSRNOT00000092542|Mapk10|ENSRNOG00000002079|mitogen activated protein kinase 10 [Source:RGD Symbol%3BAcc:3663]
rn6_v1_chr14_+_8080565_8080565	0.0444288	Hoxa9_Hoxb9	ENSRNOT00000092395|Mapk10|ENSRNOG00000002079|mitogen activated protein kinase 10 [Source:RGD Symbol%3BAcc:3663]
rn6_v1_chr2_-_54963448_54963448	0.0438098	Hoxa9_Hoxb9	ENSRNOT00000017886|Ptger4|ENSRNOG00000013240|prostaglandin E receptor 4 [Source:RGD Symbol%3BAcc:628641]
rn6_v1_chr6_+_30074303_30074303	0.0437227	Hoxa9_Hoxb9	ENSRNOT00000070908|Fam228a|ENSRNOG00000050114|family with sequence similarity 228%2C member A [Source:RGD Symbol%3BAcc:1359275]
rn6_v1_chr10_-_87954055_87954055	0.0436491	Hoxa9_Hoxb9	ENSRNOT00000018048|Krt34|ENSRNOG00000051302|keratin 34 [Source:RGD Symbol%3BAcc:1306530]
rn6_v1_chr8_-_109560747_109560747	0.0432408	Hoxa9_Hoxb9	ENSRNOT00000087334|Ppp2r3a|ENSRNOG00000022999|protein phosphatase 2%2C regulatory subunit B''%2C alpha [Source:RGD Symbol%3BAcc:1306958]
rn6_v1_chr12_-_15996958_15996958	0.0429574	Hoxa9_Hoxb9	ENSRNOT00000039726|Amz1|ENSRNOG00000024264|archaelysin family metallopeptidase 1 [Source:RGD Symbol%3BAcc:1311314]
rn6_v1_chr9_-_11027506_11027506	0.042243	Hoxa9_Hoxb9	ENSRNOT00000071107|Chaf1a|ENSRNOG00000046479|chromatin assembly factor 1 subunit A [Source:RGD Symbol%3BAcc:1590865]
rn6_v1_chr10_-_91661558_91661558	0.0417909	Hoxa9_Hoxb9	ENSRNOT00000043156|AABR07030521.1|ENSRNOG00000042833|
rn6_v1_chr3_+_67538289_67538289	0.0415032	Hoxa9_Hoxb9	ENSRNOT00000009839|Dnajc10|ENSRNOG00000006803|DnaJ heat shock protein family (Hsp40) member C10 [Source:RGD Symbol%3BAcc:1307813]
rn6_v1_chr18_+_30880020_30880020	0.0413808	Hoxa9_Hoxb9	ENSRNOT00000060468|Pcdhgb5|ENSRNOG00000039457|protocadherin gamma subfamily B%2C 5 [Source:RGD Symbol%3BAcc:1591752]
rn6_v1_chr8_+_82878941_82878941	0.0409362	Hoxa9_Hoxb9	ENSRNOT00000014846|Bmp5|ENSRNOG00000010917|bone morphogenetic protein 5 [Source:RGD Symbol%3BAcc:1305979]
rn6_v1_chr2_-_173087648_173087648	0.0405372	Hoxa9_Hoxb9	ENSRNOT00000091079|Iqcj|ENSRNOG00000060482|IQ motif containing J [Source:MGI Symbol%3BAcc:MGI:3644166]
rn6_v1_chr17_+_42168263_42168263	0.0395896	Hoxa9_Hoxb9	ENSRNOT00000047422|LOC100360654|ENSRNOG00000045963|ribosomal protein L37-like [Source:RGD Symbol%3BAcc:2321703]
rn6_v1_chr2_-_197814808_197814808	0.0395013	Hoxa9_Hoxb9	ENSRNOT00000074156|Adamtsl4|ENSRNOG00000049385|ADAMTS-like 4 [Source:RGD Symbol%3BAcc:1561012]
rn6_v1_chr2_+_257633425_257633425	0.0394723	Hoxa9_Hoxb9	ENSRNOT00000071770|Zzz3|ENSRNOG00000050321|zinc finger%2C ZZ-type containing 3 [Source:RGD Symbol%3BAcc:1565468]
rn6_v1_chr13_+_44424689_44424689	0.038985	Hoxa9_Hoxb9	ENSRNOT00000005206|Acmsd|ENSRNOG00000003884|aminocarboxymuconate semialdehyde decarboxylase [Source:RGD Symbol%3BAcc:620868]
rn6_v1_chr3_+_9998458_9998458	0.0388362	Hoxa9_Hoxb9	ENSRNOT00000012927|Fibcd1|ENSRNOG00000009735|fibrinogen C domain containing 1 [Source:RGD Symbol%3BAcc:1309097]
rn6_v1_chr3_-_40477754_40477754	0.0385374	Hoxa9_Hoxb9	ENSRNOT00000091168|AABR07052166.1|ENSRNOG00000053755|
rn6_v1_chr7_-_59547174_59547174	0.0366456	Hoxa9_Hoxb9	ENSRNOT00000085836|Cnot2|ENSRNOG00000004909|CCR4-NOT transcription complex%2C subunit 2 [Source:RGD Symbol%3BAcc:1311672]
rn6_v1_chrM_+_3904_3904	0.0363442	Hoxa9_Hoxb9	ENSRNOT00000040993|Mt-nd2|ENSRNOG00000031033|mitochondrially encoded NADH dehydrogenase 2 [Source:RGD Symbol%3BAcc:620556]
rn6_v1_chr5_+_117586103_117586103	0.0360405	Hoxa9_Hoxb9	ENSRNOT00000084640|Usp1|ENSRNOG00000007890|ubiquitin specific peptidase 1 [Source:RGD Symbol%3BAcc:1306461]
rn6_v1_chr13_+_113373578_113373578	0.0359525	Hoxa9_Hoxb9	ENSRNOT00000009900|Plxna2|ENSRNOG00000007324|plexin A2 [Source:RGD Symbol%3BAcc:1305325]
rn6_v1_chr13_+_56513286_56513286	0.0351474	Hoxa9_Hoxb9	ENSRNOT00000015596|Zbtb41|ENSRNOG00000011137|zinc finger and BTB domain containing 41 [Source:RGD Symbol%3BAcc:1560834]
rn6_v1_chr5_+_74766636_74766636	0.034879	Hoxa9_Hoxb9	ENSRNOT00000030913|Rn50_5_0791.1|ENSRNOG00000051069|
rn6_v1_chr8_+_64610952_64610952	0.0343664	Hoxa9_Hoxb9	ENSRNOT00000015963|Myo9a|ENSRNOG00000011619|myosin IXA [Source:RGD Symbol%3BAcc:621395]
rn6_v1_chr4_-_168517177_168517177	0.0343195	Hoxa9_Hoxb9	ENSRNOT00000009151|Dusp16|ENSRNOG00000006628|dual specificity phosphatase 16 [Source:RGD Symbol%3BAcc:1310721]
rn6_v1_chr17_+_5311274_5311274	0.0331639	Hoxa9_Hoxb9	ENSRNOT00000067020|LOC102547665|ENSRNOG00000042026|spermatogenesis-associated protein 31D1-like [Source:RGD Symbol%3BAcc:7632620]
rn6_v1_chr4_-_148437961_148437961	0.0316446	Hoxa9_Hoxb9	ENSRNOT00000082907|Alox5|ENSRNOG00000012972|arachidonate 5-lipoxygenase [Source:RGD Symbol%3BAcc:2096]
rn6_v1_chr2_+_257626383_257626383	0.0315827	Hoxa9_Hoxb9	ENSRNOT00000080993|Zzz3|ENSRNOG00000050321|zinc finger%2C ZZ-type containing 3 [Source:RGD Symbol%3BAcc:1565468]
rn6_v1_chr16_-_74700815_74700815	0.0315347	Hoxa9_Hoxb9	ENSRNOT00000081297|Thsd1|ENSRNOG00000012108|thrombospondin type 1 domain containing 1 [Source:RGD Symbol%3BAcc:1306998]
rn6_v1_chr13_-_71276497_71276497	0.0313685	Hoxa9_Hoxb9	ENSRNOT00000029773|Rgsl1|ENSRNOG00000026952|regulator of G-protein signaling like 1 [Source:RGD Symbol%3BAcc:1584051]
rn6_v1_chr4_+_182483194_182483194	0.0308202	Hoxa9_Hoxb9	ENSRNOT00000002528|Far2|ENSRNOG00000001851|fatty acyl CoA reductase 2 [Source:RGD Symbol%3BAcc:1565966]
rn6_v1_chr16_+_32457521_32457521	0.0303975	Hoxa9_Hoxb9	ENSRNOT00000083579|Clcn3|ENSRNOG00000010682|chloride voltage-gated channel 3 [Source:RGD Symbol%3BAcc:621219]
rn6_v1_chr2_-_196270826_196270826	0.0299244	Hoxa9_Hoxb9	ENSRNOT00000028609|Pip5k1a|ENSRNOG00000021068|phosphatidylinositol-4-phosphate 5-kinase%2C type 1%2C alpha [Source:RGD Symbol%3BAcc:1306127]
rn6_v1_chr2_-_22096949_22096949	0.0285769	Hoxa9_Hoxb9	ENSRNOT00000089325|Zfyve16|ENSRNOG00000013055|zinc finger FYVE-type containing 16 [Source:RGD Symbol%3BAcc:1564784]
rn6_v1_chr5_-_64818813_64818824	0.027232	Hoxa9_Hoxb9	ENSRNOT00000009111|Aldob|ENSRNOG00000006807|aldolase%2C fructose-bisphosphate B [Source:RGD Symbol%3BAcc:2090]	ENSRNOT00000086505|Aldob|ENSRNOG00000006807|aldolase%2C fructose-bisphosphate B [Source:RGD Symbol%3BAcc:2090]
rn6_v1_chr18_+_59748444_59748444	0.0270477	Hoxa9_Hoxb9	ENSRNOT00000024752|St8sia3|ENSRNOG00000018305|ST8 alpha-N-acetyl-neuraminide alpha-2%2C8-sialyltransferase 3 [Source:RGD Symbol%3BAcc:3680]
rn6_v1_chr7_-_143228060_143228060	0.026733	Hoxa9_Hoxb9	ENSRNOT00000088923|Krt75|ENSRNOG00000043203|keratin 75 [Source:RGD Symbol%3BAcc:1359576]	ENSRNOT00000012640|Krt75|ENSRNOG00000043203|keratin 75 [Source:RGD Symbol%3BAcc:1359576]
rn6_v1_chr9_+_111233147_111233147	0.0265502	Hoxa9_Hoxb9	ENSRNOT00000056439|Ppip5k2|ENSRNOG00000011613|diphosphoinositol pentakisphosphate kinase 2 [Source:RGD Symbol%3BAcc:1590765]
rn6_v1_chr3_-_177095597_177095597	0.0264897	Hoxa9_Hoxb9	ENSRNOT00000029386|Samd10|ENSRNOG00000036719|sterile alpha motif domain containing 10 [Source:RGD Symbol%3BAcc:1563203]
rn6_v1_chr1_+_154131926_154131926	0.0261187	Hoxa9_Hoxb9	ENSRNOT00000035257|LOC102549852|ENSRNOG00000022941|ferritin light chain 1-like [Source:RGD Symbol%3BAcc:7625414]
rn6_v1_chr8_-_63750531_63750531	0.0257529	Hoxa9_Hoxb9	ENSRNOT00000009496|Neo1|ENSRNOG00000006490|neogenin 1 [Source:RGD Symbol%3BAcc:619837]
rn6_v1_chr8_-_102149912_102149912	0.02568	Hoxa9_Hoxb9	ENSRNOT00000011263|RGD1309079|ENSRNOG00000008519|similar to Ab2-095 [Source:RGD Symbol%3BAcc:1309079]
rn6_v1_chr19_-_22194740_22194740	0.0254546	Hoxa9_Hoxb9	ENSRNOT00000086187|Phkb|ENSRNOG00000024101|phosphorylase kinase regulatory subunit beta [Source:RGD Symbol%3BAcc:620186]
rn6_v1_chr3_-_7796385_7796385	0.025028	Hoxa9_Hoxb9	ENSRNOT00000082489|Ntng2|ENSRNOG00000013694|netrin G2 [Source:RGD Symbol%3BAcc:1307089]
rn6_v1_chr9_-_91100482_91100482	0.0236929	Hoxa9_Hoxb9	ENSRNOT00000064642|LOC100911860|ENSRNOG00000049962|ubiquitin carboxyl-terminal hydrolase 40-like [Source:RGD Symbol%3BAcc:6490066]
rn6_v1_chr2_+_243840134_243840134	0.0228236	Hoxa9_Hoxb9	ENSRNOT00000093355|Eif4e|ENSRNOG00000052343|eukaryotic translation initiation factor 4E [Source:RGD Symbol%3BAcc:69647]
rn6_v1_chr4_-_150829913_150829913	0.0227433	Hoxa9_Hoxb9	ENSRNOT00000041571|Cacna1c|ENSRNOG00000007090|calcium voltage-gated channel subunit alpha1 C [Source:RGD Symbol%3BAcc:2245]
rn6_v1_chr6_+_76745981_76745981	0.0224746	Hoxa9_Hoxb9	ENSRNOT00000076784|Brms1l|ENSRNOG00000051077|breast cancer metastasis-suppressor 1-like [Source:RGD Symbol%3BAcc:1306006]
rn6_v1_chr4_-_150829741_150829741	0.0216984	Hoxa9_Hoxb9	ENSRNOT00000051846|Cacna1c|ENSRNOG00000007090|calcium voltage-gated channel subunit alpha1 C [Source:RGD Symbol%3BAcc:2245]	ENSRNOT00000052017|Cacna1c|ENSRNOG00000007090|calcium voltage-gated channel subunit alpha1 C [Source:RGD Symbol%3BAcc:2245]
rn6_v1_chr5_-_164502469_164502469	0.0214772	Hoxa9_Hoxb9	ENSRNOT00000051887|RGD1565622|ENSRNOG00000033792|RGD1565622 [Source:RGD Symbol%3BAcc:1565622]
rn6_v1_chr19_+_39063998_39063998	0.0207349	Hoxa9_Hoxb9	ENSRNOT00000081116|Has3|ENSRNOG00000059362|hyaluronan synthase 3 [Source:RGD Symbol%3BAcc:628656]
rn6_v1_chr2_+_30360100_30360100	0.0204112	Hoxa9_Hoxb9	ENSRNOT00000024456|Smn1|ENSRNOG00000018067|survival of motor neuron 1%2C telomeric [Source:RGD Symbol%3BAcc:620755]
rn6_v1_chr4_+_25635765_25635765	0.0204098	Hoxa9_Hoxb9	ENSRNOT00000009340|Gtpbp10|ENSRNOG00000007098|GTP binding protein 10 [Source:RGD Symbol%3BAcc:1305878]
rn6_v1_chr4_+_57925323_57925323	0.0199694	Hoxa9_Hoxb9	ENSRNOT00000085798|Cpa5|ENSRNOG00000010467|carboxypeptidase A5 [Source:RGD Symbol%3BAcc:1303098]
rn6_v1_chr19_+_9895121_9895121	0.0193966	Hoxa9_Hoxb9	ENSRNOT00000033953|Prss54|ENSRNOG00000023092|protease%2C serine%2C 54 [Source:RGD Symbol%3BAcc:1307877]
rn6_v1_chr2_-_185005572_185005572	0.0193271	Hoxa9_Hoxb9	ENSRNOT00000093291|Fam160a1|ENSRNOG00000048256|family with sequence similarity 160%2C member A1 [Source:RGD Symbol%3BAcc:1565007]
rn6_v1_chr1_+_242959488_242959488	0.0193162	Hoxa9_Hoxb9	ENSRNOT00000015668|Dock8|ENSRNOG00000015894|dedicator of cytokinesis 8 [Source:RGD Symbol%3BAcc:1561588]
rn6_v1_chr8_+_102304095_102304095	0.019165	Hoxa9_Hoxb9	ENSRNOT00000011358|Slc9a9|ENSRNOG00000008554|solute carrier family 9 member A9 [Source:RGD Symbol%3BAcc:1560736]
rn6_v1_chr9_+_20048121_20048121	0.019123	Hoxa9_Hoxb9	ENSRNOT00000014791|Mep1a|ENSRNOG00000011022|meprin 1 subunit alpha [Source:RGD Symbol%3BAcc:3080]
rn6_v1_chr1_-_193700673_193700673	0.0186715	Hoxa9_Hoxb9	ENSRNOT00000071314|Paip2l1|ENSRNOG00000048424|polyadenylate-binding protein-interacting protein 2-like 1 [Source:RGD Symbol%3BAcc:1304666]
rn6_v1_chr7_+_123364312_123364312	0.0185109	Hoxa9_Hoxb9	ENSRNOT00000056048|Ccdc134|ENSRNOG00000007262|coiled-coil domain containing 134 [Source:RGD Symbol%3BAcc:1559657]
rn6_v1_chr2_-_21437193_21437193	0.0183565	Hoxa9_Hoxb9	ENSRNOT00000084002|Ckmt2|ENSRNOG00000055450|creatine kinase%2C mitochondrial 2 [Source:MGI Symbol%3BAcc:MGI:1923972]
rn6_v1_chr1_-_163117235_163117235	0.0178595	Hoxa9_Hoxb9	ENSRNOT00000019370|Capn5|ENSRNOG00000014251|calpain 5 [Source:RGD Symbol%3BAcc:620084]
rn6_v1_chr3_+_138174054_138174054	0.0175557	Hoxa9_Hoxb9	ENSRNOT00000007946|Banf2|ENSRNOG00000006032|barrier to autointegration factor 2 [Source:RGD Symbol%3BAcc:1307909]
rn6_v1_chr1_+_204959174_204959174	0.016798	Hoxa9_Hoxb9	ENSRNOT00000023257|Zranb1|ENSRNOG00000017294|zinc finger RANBP2-type containing 1 [Source:RGD Symbol%3BAcc:2321751]
rn6_v1_chr1_+_93242050_93242050	0.0164599	Hoxa9_Hoxb9	ENSRNOT00000013741|RGD1562402|ENSRNOG00000040273|similar to 60S ribosomal protein L27a [Source:RGD Symbol%3BAcc:1562402]
rn6_v1_chr20_-_4542073_4542073	0.0164493	Hoxa9_Hoxb9	ENSRNOT00000000477|Cfb|ENSRNOG00000051158|complement factor B [Source:RGD Symbol%3BAcc:2204]
rn6_v1_chr1_+_277355619_277355619	0.015186	Hoxa9_Hoxb9	ENSRNOT00000022788|Nhlrc2|ENSRNOG00000016948|NHL repeat containing 2 [Source:RGD Symbol%3BAcc:1307348]
rn6_v1_chr4_+_56981283_56981283	0.0149938	Hoxa9_Hoxb9	ENSRNOT00000010989|Tspan33|ENSRNOG00000007900|tetraspanin 33 [Source:RGD Symbol%3BAcc:1560915]
rn6_v1_chr4_+_68849033_68849033	0.0149879	Hoxa9_Hoxb9	ENSRNOT00000016912|Mgam|ENSRNOG00000026177|maltase-glucoamylase [Source:MGI Symbol%3BAcc:MGI:1203495]
rn6_v1_chr8_+_44136496_44136496	0.0138671	Hoxa9_Hoxb9	ENSRNOT00000087022|Scn3b|ENSRNOG00000057221|sodium voltage-gated channel beta subunit 3 [Source:RGD Symbol%3BAcc:621657]
rn6_v1_chr16_-_48692476_48692476	0.0134742	Hoxa9_Hoxb9	ENSRNOT00000013118|Irf2|ENSRNOG00000009824|interferon regulatory factor 2 [Source:RGD Symbol%3BAcc:1304922]
rn6_v1_chr6_-_26314844_26314844	0.012806	Hoxa9_Hoxb9	ENSRNOT00000006658|Zfp512|ENSRNOG00000039815|zinc finger protein 512 [Source:RGD Symbol%3BAcc:1561526]
rn6_v1_chr5_-_24489468_24489468	0.0122769	Hoxa9_Hoxb9	ENSRNOT00000081395|Ints8|ENSRNOG00000008124|integrator complex subunit 8 [Source:RGD Symbol%3BAcc:1310592]
rn6_v1_chr18_-_57866741_57866741	0.0121247	Hoxa9_Hoxb9	ENSRNOT00000025790|Fbxo38|ENSRNOG00000019063|F-box protein 38 [Source:RGD Symbol%3BAcc:1311505]
rn6_v1_chr17_-_18590536_18590536	0.0113472	Hoxa9_Hoxb9	ENSRNOT00000078992|Cap2|ENSRNOG00000043350|CAP%2C adenylate cyclase-associated protein%2C 2 (yeast) [Source:RGD Symbol%3BAcc:620310]
rn6_v1_chr8_+_107508351_107508351	0.0113112	Hoxa9_Hoxb9	ENSRNOT00000081594|Cep70|ENSRNOG00000022845|centrosomal protein 70 [Source:RGD Symbol%3BAcc:1561486]
rn6_v1_chr4_+_178617401_178617401	0.0109527	Hoxa9_Hoxb9	ENSRNOT00000042619|AABR07062466.1|ENSRNOG00000033855|
rn6_v1_chr14_-_115391652_115391652	0.0102241	Hoxa9_Hoxb9	ENSRNOT00000002094|Chac2|ENSRNOG00000001531|ChaC cation transport regulator 2 [Source:RGD Symbol%3BAcc:1309120]
rn6_v1_chr10_-_87529599_87529599	0.0100702	Hoxa9_Hoxb9	ENSRNOT00000074099|Krtap2-1|ENSRNOG00000060941|keratin associated protein 2-1 [Source:RGD Symbol%3BAcc:1561281]
rn6_v1_chr10_+_53621375_53621375	0.00999459	Hoxa9_Hoxb9	ENSRNOT00000004147|Myh3|ENSRNOG00000046276|myosin heavy chain 3 [Source:RGD Symbol%3BAcc:3138]
rn6_v1_chr15_-_48284548_48284548	0.00970887	Hoxa9_Hoxb9	ENSRNOT00000038336|Hmbox1|ENSRNOG00000013326|homeobox containing 1 [Source:RGD Symbol%3BAcc:1306787]
rn6_v1_chr8_-_60570058_60570058	0.00959864	Hoxa9_Hoxb9	ENSRNOT00000009169|Scaper|ENSRNOG00000006864|S-phase cyclin A-associated protein in the ER [Source:RGD Symbol%3BAcc:621585]
rn6_v1_chr5_+_57657909_57657909	0.0092031	Hoxa9_Hoxb9	ENSRNOT00000073017|LOC683961|ENSRNOG00000048698|similar to ribosomal protein S13 [Source:RGD Symbol%3BAcc:1596535]
rn6_v1_chr10_+_39655455_39655455	0.00898451	Hoxa9_Hoxb9	ENSRNOT00000058817|Acsl6|ENSRNOG00000026745|acyl-CoA synthetase long-chain family member 6 [Source:RGD Symbol%3BAcc:69403]
rn6_v1_chr3_+_93648343_93648343	0.00852842	Hoxa9_Hoxb9	ENSRNOT00000091164|AABR07053136.1|ENSRNOG00000060735|
rn6_v1_chr1_+_114679537_114679537	0.00815455	Hoxa9_Hoxb9	ENSRNOT00000019498|Oca2|ENSRNOG00000014465|OCA2 melanosomal transmembrane protein [Source:RGD Symbol%3BAcc:2318412]
rn6_v1_chr4_-_178441547_178441547	0.00770533	Hoxa9_Hoxb9	ENSRNOT00000087434|Sox5|ENSRNOG00000027869|SRY box 5 [Source:RGD Symbol%3BAcc:620471]	ENSRNOT00000055542|Sox5|ENSRNOG00000027869|SRY box 5 [Source:RGD Symbol%3BAcc:620471]
rn6_v1_chr16_-_69176036_69176036	0.00761649	Hoxa9_Hoxb9	ENSRNOT00000018369|Prosc|ENSRNOG00000013751|proline synthetase co-transcribed homolog (bacterial) [Source:RGD Symbol%3BAcc:1308962]
rn6_v1_chr18_-_35780519_35780519	0.00725017	Hoxa9_Hoxb9	ENSRNOT00000079667|Mcc|ENSRNOG00000011271|mutated in colorectal cancers [Source:RGD Symbol%3BAcc:1561988]
rn6_v1_chr2_-_250862419_250862419	0.00722115	Hoxa9_Hoxb9	ENSRNOT00000017943|Clca4|ENSRNOG00000029889|chloride channel accessory 4 [Source:RGD Symbol%3BAcc:1303234]
rn6_v1_chr1_+_229642412_229642412	0.0070392	Hoxa9_Hoxb9	ENSRNOT00000017109|Lpxn|ENSRNOG00000012611|leupaxin [Source:RGD Symbol%3BAcc:1304981]
rn6_v1_chr6_-_38007162_38007162	0.00702924	Hoxa9_Hoxb9	ENSRNOT00000044583|AABR07063632.1|ENSRNOG00000029825|
rn6_v1_chr10_-_88019967_88019967	0.00632726	Hoxa9_Hoxb9	ENSRNOT00000047580|Krt36|ENSRNOG00000031805|keratin 36 [Source:RGD Symbol%3BAcc:1305792]
rn6_v1_chr8_+_130009573_130009573	0.00624247	Hoxa9_Hoxb9	ENSRNOT00000026106|Trak1|ENSRNOG00000019262|trafficking kinesin protein 1 [Source:RGD Symbol%3BAcc:1307844]
rn6_v1_chr7_-_101138373_101138373	0.00533077	Hoxa9_Hoxb9	ENSRNOT00000043257|LOC500877|ENSRNOG00000029292|Ab1-152 [Source:RGD Symbol%3BAcc:1563390]
rn6_v1_chr2_+_248398917_248398917	0.00502298	Hoxa9_Hoxb9	ENSRNOT00000045855|Gbp1|ENSRNOG00000023943|guanylate binding protein 1 [Source:RGD Symbol%3BAcc:1311877]
rn6_v1_chr3_+_111298713_111298713	0.00466503	Hoxa9_Hoxb9	ENSRNOT00000043677|Dppa3|ENSRNOG00000031161|developmental pluripotency-associated 3 [Source:RGD Symbol%3BAcc:1310932]
rn6_v1_chr16_-_81693000_81693000	0.00448563	Hoxa9_Hoxb9	ENSRNOT00000092353|Lamp1|ENSRNOG00000019629|lysosomal-associated membrane protein 1 [Source:RGD Symbol%3BAcc:2989]
rn6_v1_chr19_+_6046665_6046665	0.00418411	Hoxa9_Hoxb9	ENSRNOT00000084126|Cdh8|ENSRNOG00000056643|cadherin 8 [Source:RGD Symbol%3BAcc:69286]
rn6_v1_chr14_-_28967980_28967980	0.0039014	Hoxa9_Hoxb9	ENSRNOT00000048175|Adgrl3|ENSRNOG00000030149|adhesion G protein-coupled receptor L3 [Source:RGD Symbol%3BAcc:620836]
rn6_v1_chr13_+_90260783_90260783	0.00369567	Hoxa9_Hoxb9	ENSRNOT00000050547|Cd84|ENSRNOG00000022884|CD84 molecule [Source:RGD Symbol%3BAcc:1564553]
rn6_v1_chr3_-_154490851_154490851	0.00354789	Hoxa9_Hoxb9	ENSRNOT00000017213|Tti1|ENSRNOG00000012880|TELO2 interacting protein 1 [Source:RGD Symbol%3BAcc:1562582]
rn6_v1_chr10_-_66848388_66848388	0.00296356	Hoxa9_Hoxb9	ENSRNOT00000018891|Omg|ENSRNOG00000014107|oligodendrocyte-myelin glycoprotein [Source:RGD Symbol%3BAcc:1359125]
rn6_v1_chr5_-_113880911_113880911	0.00294026	Hoxa9_Hoxb9	ENSRNOT00000029441|Eqtn|ENSRNOG00000026323|equatorin [Source:RGD Symbol%3BAcc:1563332]
rn6_v1_chr1_-_220136470_220136470	0.00267258	Hoxa9_Hoxb9	ENSRNOT00000026812|Actn3|ENSRNOG00000019745|actinin alpha 3 [Source:RGD Symbol%3BAcc:621792]
rn6_v1_chr3_-_21904133_21904270	0.00266365	Hoxa9_Hoxb9	ENSRNOT00000090576|Strbp|ENSRNOG00000010150|spermatid perinuclear RNA binding protein [Source:RGD Symbol%3BAcc:620673]	ENSRNOT00000087611|Strbp|ENSRNOG00000010150|spermatid perinuclear RNA binding protein [Source:RGD Symbol%3BAcc:620673]	ENSRNOT00000066377|Strbp|ENSRNOG00000010150|spermatid perinuclear RNA binding protein [Source:RGD Symbol%3BAcc:620673]
rn6_v1_chr3_+_140024043_140024043	0.00187406	Hoxa9_Hoxb9	ENSRNOT00000086409|Rin2|ENSRNOG00000010131|Ras and Rab interactor 2 [Source:RGD Symbol%3BAcc:1305873]
rn6_v1_chr18_-_11789697_11789708	0.00148632	Hoxa9_Hoxb9	ENSRNOT00000077304|Dsc3|ENSRNOG00000017159|desmocollin 3 [Source:RGD Symbol%3BAcc:1311782]	ENSRNOT00000064554|Dsc3|ENSRNOG00000017159|desmocollin 3 [Source:RGD Symbol%3BAcc:1311782]
rn6_v1_chr14_-_84662143_84662222	0.000864712	Hoxa9_Hoxb9	ENSRNOT00000057529|Hormad2|ENSRNOG00000037865|HORMA domain containing 2 [Source:RGD Symbol%3BAcc:1565447]	ENSRNOT00000080078|Hormad2|ENSRNOG00000037865|HORMA domain containing 2 [Source:RGD Symbol%3BAcc:1565447]
rn6_v1_chr11_+_85508300_85508300	0.000299744	Hoxa9_Hoxb9	ENSRNOT00000038646|AABR07034730.3|ENSRNOG00000057165|
