rn6_v1_chr8_-_63291966_63291966	0.0715617	Hoxc9	ENSRNOT00000077762|AABR07070278.1|ENSRNOG00000051681|
rn6_v1_chr6_-_123577695_123577695	0.0561661	Hoxc9	ENSRNOT00000006604|Foxn3|ENSRNOG00000004709|forkhead box N3 [Source:RGD Symbol%3BAcc:1305711]
rn6_v1_chr2_+_66940057_66940057	0.0555863	Hoxc9	ENSRNOT00000043050|Cdh9|ENSRNOG00000033837|cadherin 9 [Source:RGD Symbol%3BAcc:1308343]
rn6_v1_chr17_+_41798783_41798783	0.0471111	Hoxc9	ENSRNOT00000023519|Nrsn1|ENSRNOG00000017444|neurensin 1 [Source:RGD Symbol%3BAcc:1307833]
rn6_v1_chr17_-_78735324_78735324	0.0446003	Hoxc9	ENSRNOT00000036299|Cdnf|ENSRNOG00000026493|cerebral dopamine neurotrophic factor [Source:RGD Symbol%3BAcc:1307600]
rn6_v1_chr19_+_43163129_43163129	0.0432882	Hoxc9	ENSRNOT00000073721|Clec18a|ENSRNOG00000022721|C-type lectin domain family 18%2C member A [Source:RGD Symbol%3BAcc:1559899]
rn6_v1_chr9_+_67699379_67699515	0.0403871	Hoxc9	ENSRNOT00000091237|Ctla4|ENSRNOG00000054129|cytotoxic T-lymphocyte-associated protein 4 [Source:RGD Symbol%3BAcc:61975]	ENSRNOT00000088183|Ctla4|ENSRNOG00000054129|cytotoxic T-lymphocyte-associated protein 4 [Source:RGD Symbol%3BAcc:61975]
rn6_v1_chr19_-_11341863_11341863	0.0396136	Hoxc9	ENSRNOT00000025694|Mt4|ENSRNOG00000019004|metallothionein 4 [Source:RGD Symbol%3BAcc:1565500]
rn6_v1_chr1_-_155955173_155955173	0.0392399	Hoxc9	ENSRNOT00000079345|AABR07004776.1|ENSRNOG00000051568|
rn6_v1_chr13_-_32427177_32427177	0.0391867	Hoxc9	ENSRNOT00000044628|Cdh19|ENSRNOG00000029841|cadherin 19 [Source:RGD Symbol%3BAcc:1307169]
rn6_v1_chr7_+_123296183_123296183	0.0354616	Hoxc9	ENSRNOT00000048614|LOC100362109|ENSRNOG00000030150|hypothetical protein LOC100362109 [Source:RGD Symbol%3BAcc:2318773]
rn6_v1_chr3_-_23020441_23020441	0.0352834	Hoxc9	ENSRNOT00000017651|Nr5a1|ENSRNOG00000012682|nuclear receptor subfamily 5%2C group A%2C member 1 [Source:RGD Symbol%3BAcc:68350]
rn6_v1_chr11_-_60679555_60679555	0.0341776	Hoxc9	ENSRNOT00000059735|Ccdc80|ENSRNOG00000002052|coiled-coil domain containing 80 [Source:RGD Symbol%3BAcc:69421]
rn6_v1_chr19_+_50848736_50848736	0.0325058	Hoxc9	ENSRNOT00000077053|Cdh13|ENSRNOG00000014371|cadherin 13 [Source:RGD Symbol%3BAcc:619745]
rn6_v1_chr10_-_88107232_88107232	0.0320671	Hoxc9	ENSRNOT00000019330|Krt9|ENSRNOG00000014370|keratin 9 [Source:RGD Symbol%3BAcc:628785]	ENSRNOT00000076770|Krt9|ENSRNOG00000014370|keratin 9 [Source:RGD Symbol%3BAcc:628785]
rn6_v1_chr2_+_233602732_233602732	0.0315469	Hoxc9	ENSRNOT00000044232|Pitx2|ENSRNOG00000010681|paired-like homeodomain 2 [Source:RGD Symbol%3BAcc:3331]
rn6_v1_chr9_+_10044756_10044756	0.0314826	Hoxc9	ENSRNOT00000071188|Pspn|ENSRNOG00000049171|persephin [Source:RGD Symbol%3BAcc:3432]
rn6_v1_chrX_-_142248369_142248369	0.0308898	Hoxc9	ENSRNOT00000091330|Fgf13|ENSRNOG00000042753|fibroblast growth factor 13 [Source:RGD Symbol%3BAcc:620164]
rn6_v1_chr5_+_154489590_154489590	0.0293873	Hoxc9	ENSRNOT00000035788|Id3|ENSRNOG00000026124|inhibitor of DNA binding 3%2C HLH protein [Source:RGD Symbol%3BAcc:2860]
rn6_v1_chr10_-_85974644_85974651	0.0271471	Hoxc9	ENSRNOT00000006098|Cacnb1|ENSRNOG00000004518|calcium voltage-gated channel auxiliary subunit beta 1 [Source:RGD Symbol%3BAcc:68382]	ENSRNOT00000082974|Cacnb1|ENSRNOG00000004518|calcium voltage-gated channel auxiliary subunit beta 1 [Source:RGD Symbol%3BAcc:68382]
rn6_v1_chr14_+_42401706_42401706	0.02695	Hoxc9	ENSRNOT00000090148|Bend4|ENSRNOG00000053303|BEN domain containing 4 [Source:RGD Symbol%3BAcc:1584735]
rn6_v1_chr1_+_164706276_164706276	0.0267469	Hoxc9	ENSRNOT00000024311|Olr36|ENSRNOG00000030788|olfactory receptor 36 [Source:RGD Symbol%3BAcc:1333325]
rn6_v1_chr8_+_130350510_130350510	0.0266316	Hoxc9	ENSRNOT00000073376|Ss18l2|ENSRNOG00000047853|SS18 like 2 [Source:RGD Symbol%3BAcc:1590139]
rn6_v1_chr4_-_85329362_85329362	0.0263036	Hoxc9	ENSRNOT00000014925|Crhr2|ENSRNOG00000011145|corticotropin releasing hormone receptor 2 [Source:RGD Symbol%3BAcc:70547]
rn6_v1_chr8_-_11887799_11887799	0.0262073	Hoxc9	ENSRNOT00000072420|Jrkl|ENSRNOG00000047133|JRK-like [Source:RGD Symbol%3BAcc:1308986]
rn6_v1_chr6_-_33691301_33691301	0.0256051	Hoxc9	ENSRNOT00000008008|Rhob|ENSRNOG00000021403|ras homolog family member B [Source:RGD Symbol%3BAcc:621309]
rn6_v1_chr10_+_103874383_103874383	0.0254765	Hoxc9	ENSRNOT00000038935|Otop2|ENSRNOG00000028121|otopetrin 2 [Source:RGD Symbol%3BAcc:1304830]
rn6_v1_chr5_-_7465510_7465510	0.025127	Hoxc9	ENSRNOT00000066254|RGD1564053|ENSRNOG00000005375|similar to hypothetical protein [Source:RGD Symbol%3BAcc:1564053]
rn6_v1_chr4_-_132740938_132740938	0.0250375	Hoxc9	ENSRNOT00000007185|Rybp|ENSRNOG00000005353|RING1 and YY1 binding protein [Source:RGD Symbol%3BAcc:1307077]
rn6_v1_chr10_+_84119884_84119884	0.0237388	Hoxc9	ENSRNOT00000009951|Hoxb9|ENSRNOG00000007573|homeo box B9 [Source:RGD Symbol%3BAcc:1306158]
rn6_v1_chrX_+_50599060_50599060	0.0236266	Hoxc9	ENSRNOT00000058420|AABR07038477.1|ENSRNOG00000038369|
rn6_v1_chr1_+_264893162_264893162	0.0224754	Hoxc9	ENSRNOT00000021714|Tlx1|ENSRNOG00000016120|T-cell leukemia%2C homeobox 1 [Source:RGD Symbol%3BAcc:1563655]
rn6_v1_chr13_-_98023829_98023829	0.0217567	Hoxc9	ENSRNOT00000075426|Kif28p|ENSRNOG00000050602|kinesin family member 28%2C pseudogene [Source:RGD Symbol%3BAcc:1559696]
rn6_v1_chr10_-_8498422_8498422	0.0213872	Hoxc9	ENSRNOT00000082332|Rbfox1|ENSRNOG00000002827|RNA binding protein%2C fox-1 homolog 1 [Source:RGD Symbol%3BAcc:1311210]
rn6_v1_chr16_-_32299542_32299542	0.0211773	Hoxc9	ENSRNOT00000072321|AABR07025299.1|ENSRNOG00000047664|
rn6_v1_chr7_+_78649875_78649875	0.0205334	Hoxc9	ENSRNOT00000006243|Dcstamp|ENSRNOG00000004704|dendrocyte expressed seven transmembrane protein [Source:RGD Symbol%3BAcc:1310435]
rn6_v1_chrX_+_111396995_111396995	0.0198657	Hoxc9	ENSRNOT00000087634|Pih1d3|ENSRNOG00000054900|PIH1 domain containing 3 [Source:RGD Symbol%3BAcc:1566312]
rn6_v1_chr13_-_50514151_50514151	0.0194935	Hoxc9	ENSRNOT00000003951|Ren|ENSRNOG00000002937|renin [Source:RGD Symbol%3BAcc:3554]
rn6_v1_chr1_-_140860882_140860894	0.0194283	Hoxc9	ENSRNOT00000067889|Mfge8|ENSRNOG00000017510|milk fat globule-EGF factor 8 protein [Source:RGD Symbol%3BAcc:3083]	ENSRNOT00000024253|Mfge8|ENSRNOG00000017510|milk fat globule-EGF factor 8 protein [Source:RGD Symbol%3BAcc:3083]	ENSRNOT00000079100|Mfge8|ENSRNOG00000017510|milk fat globule-EGF factor 8 protein [Source:RGD Symbol%3BAcc:3083]
rn6_v1_chr20_+_22060224_22060224	0.0193745	Hoxc9	ENSRNOT00000057992|Zfp365|ENSRNOG00000000638|zinc finger protein 365 [Source:RGD Symbol%3BAcc:1565986]
rn6_v1_chr14_-_8510138_8510138	0.0175133	Hoxc9	ENSRNOT00000080758|Arhgap24|ENSRNOG00000056944|Rho GTPase activating protein 24 [Source:RGD Symbol%3BAcc:1306669]
rn6_v1_chr8_+_119228612_119228730	0.0174606	Hoxc9	ENSRNOT00000078439|Lrrc2|ENSRNOG00000030688|leucine rich repeat containing 2 [Source:RGD Symbol%3BAcc:1311716]	ENSRNOT00000043737|Lrrc2|ENSRNOG00000030688|leucine rich repeat containing 2 [Source:RGD Symbol%3BAcc:1311716]
rn6_v1_chr13_-_36290531_36290531	0.0162017	Hoxc9	ENSRNOT00000071388|Steap3|ENSRNOG00000049471|STEAP3 metalloreductase [Source:RGD Symbol%3BAcc:708552]
rn6_v1_chr20_-_27083410_27083410	0.016143	Hoxc9	ENSRNOT00000000432|Atoh7|ENSRNOG00000000384|atonal bHLH transcription factor 7 [Source:RGD Symbol%3BAcc:1304957]
rn6_v1_chr2_-_96032722_96032722	0.0157413	Hoxc9	ENSRNOT00000015746|LOC100360846|ENSRNOG00000011827|proteasome subunit beta type 6-like [Source:RGD Symbol%3BAcc:2321312]
rn6_v1_chr20_-_25826658_25826658	0.0149823	Hoxc9	ENSRNOT00000057950|Ctnna3|ENSRNOG00000000373|catenin alpha 3 [Source:RGD Symbol%3BAcc:1562230]	ENSRNOT00000084660|Ctnna3|ENSRNOG00000000373|catenin alpha 3 [Source:RGD Symbol%3BAcc:1562230]
rn6_v1_chr1_+_79754587_79754587	0.0145515	Hoxc9	ENSRNOT00000083211|Micb|ENSRNOG00000057645|MHC class I polypeptide-related sequence B [Source:RGD Symbol%3BAcc:1564508]
rn6_v1_chr18_-_24823837_24823858	0.0140683	Hoxc9	ENSRNOT00000021405|Myo7b|ENSRNOG00000015035|myosin VIIb [Source:RGD Symbol%3BAcc:1561153]	ENSRNOT00000090390|Myo7b|ENSRNOG00000015035|myosin VIIb [Source:RGD Symbol%3BAcc:1561153]
rn6_v1_chr9_+_53013413_53013413	0.0127003	Hoxc9	ENSRNOT00000005313|Ankar|ENSRNOG00000003991|ankyrin and armadillo repeat containing [Source:RGD Symbol%3BAcc:1561071]
rn6_v1_chr4_-_151516894_151516894	0.0122362	Hoxc9	ENSRNOT00000011044|Wnt5b|ENSRNOG00000008168|wingless-type MMTV integration site family%2C member 5B [Source:RGD Symbol%3BAcc:628850]
rn6_v1_chr16_-_31301880_31301880	0.0117899	Hoxc9	ENSRNOT00000084847|AABR07025272.1|ENSRNOG00000056947|	ENSRNOT00000083943|AABR07025272.1|ENSRNOG00000056947|
rn6_v1_chr20_+_26999795_26999795	0.0113683	Hoxc9	ENSRNOT00000057872|Mypn|ENSRNOG00000000383|myopalladin [Source:RGD Symbol%3BAcc:1308510]
rn6_v1_chr2_+_31378743_31378743	0.0113029	Hoxc9	ENSRNOT00000050384|AABR07007853.1|ENSRNOG00000048656|
rn6_v1_chr16_-_69280109_69280109	0.011082	Hoxc9	ENSRNOT00000058595|AABR07026240.1|ENSRNOG00000038458|
rn6_v1_chrX_+_29520263_29520263	0.0102852	Hoxc9	ENSRNOT00000037047|Saxo1|ENSRNOG00000025637|stabilizer of axonemal microtubules 1 [Source:RGD Symbol%3BAcc:1549779]
rn6_v1_chr10_-_78993045_78993045	0.00983469	Hoxc9	ENSRNOT00000043005|LOC100363469|ENSRNOG00000031579|ribosomal protein S24-like [Source:RGD Symbol%3BAcc:2322976]
rn6_v1_chr2_-_259382765_259382765	0.00890622	Hoxc9	ENSRNOT00000091407|St6galnac3|ENSRNOG00000056894|ST6 N-acetylgalactosaminide alpha-2%2C6-sialyltransferase 3 [Source:RGD Symbol%3BAcc:3677]
rn6_v1_chr6_-_25507073_25507073	0.0087981	Hoxc9	ENSRNOT00000061176|Plb1|ENSRNOG00000026037|phospholipase B1 [Source:RGD Symbol%3BAcc:621565]
rn6_v1_chrX_+_136460215_136460215	0.00879521	Hoxc9	ENSRNOT00000093538|Arhgap36|ENSRNOG00000007552|Rho GTPase activating protein 36 [Source:RGD Symbol%3BAcc:1565967]
rn6_v1_chr10_-_81942188_81942188	0.00852939	Hoxc9	ENSRNOT00000003784|Wfikkn2|ENSRNOG00000002831|WAP%2C follistatin/kazal%2C immunoglobulin%2C kunitz and netrin domain containing 2 [Source:RGD Symbol%3BAcc:1305361]
rn6_v1_chr1_+_41323194_41323194	0.00746316	Hoxc9	ENSRNOT00000026350|Esr1|ENSRNOG00000019358|estrogen receptor 1 [Source:RGD Symbol%3BAcc:2581]
rn6_v1_chr2_-_120316600_120316600	0.00746149	Hoxc9	ENSRNOT00000084521|Ccdc39|ENSRNOG00000011440|coiled-coil domain containing 39 [Source:RGD Symbol%3BAcc:1306277]
rn6_v1_chrX_+_119390013_119390013	0.00658253	Hoxc9	ENSRNOT00000074269|Agtr2|ENSRNOG00000050006|angiotensin II receptor%2C type 2 [Source:RGD Symbol%3BAcc:2072]
rn6_v1_chr7_-_29171783_29171783	0.0061578	Hoxc9	ENSRNOT00000079235|Mybpc1|ENSRNOG00000056493|myosin binding protein C%2C slow type [Source:RGD Symbol%3BAcc:735102]
rn6_v1_chr10_+_56524468_56524468	0.00520461	Hoxc9	ENSRNOT00000022041|Gps2|ENSRNOG00000016360|G protein pathway suppressor 2 [Source:RGD Symbol%3BAcc:1562746]
rn6_v1_chr16_+_22361998_22361998	0.0047043	Hoxc9	ENSRNOT00000016193|Slc18a1|ENSRNOG00000011992|solute carrier family 18 member A1 [Source:RGD Symbol%3BAcc:3693]
rn6_v1_chr9_+_42315682_42315682	0.00322773	Hoxc9	ENSRNOT00000071995|AABR07067388.1|ENSRNOG00000045975|
rn6_v1_chr16_+_8207223_8207223	0.00236944	Hoxc9	ENSRNOT00000026751|Oxnad1|ENSRNOG00000019760|oxidoreductase NAD-binding domain containing 1 [Source:RGD Symbol%3BAcc:1311534]
rn6_v1_chr18_+_59096643_59096643	0.00227966	Hoxc9	ENSRNOT00000025325|Wdr7|ENSRNOG00000018387|WD repeat domain 7 [Source:RGD Symbol%3BAcc:619836]
rn6_v1_chr1_+_201055644_201055644	0.0019126	Hoxc9	ENSRNOT00000054937|Tacc2|ENSRNOG00000020457|transforming%2C acidic coiled-coil containing protein 2 [Source:RGD Symbol%3BAcc:1303004]	ENSRNOT00000047161|Tacc2|ENSRNOG00000020457|transforming%2C acidic coiled-coil containing protein 2 [Source:RGD Symbol%3BAcc:1303004]
rn6_v1_chr16_-_29936307_29936307	0.0010567	Hoxc9	ENSRNOT00000088707|Ddx60|ENSRNOG00000059097|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 [Source:MGI Symbol%3BAcc:MGI:2384570]
rn6_v1_chr16_-_74864816_74864816	0.00100645	Hoxc9	ENSRNOT00000017164|Alg11|ENSRNOG00000012841|ALG11%2C alpha-1%2C2-mannosyltransferase [Source:RGD Symbol%3BAcc:1564725]
