rn6_v1_chr16_+_84465656_84465656	0.300745	Hoxd1	ENSRNOT00000043188|LOC689713|ENSRNOG00000033703|LRRGT00175 [Source:RGD Symbol%3BAcc:1588775]
rn6_v1_chr6_-_3355339_3355339	0.268181	Hoxd1	ENSRNOT00000084602|Map4k3|ENSRNOG00000007172|mitogen-activated protein kinase kinase kinase kinase 3 [Source:RGD Symbol%3BAcc:621280]
rn6_v1_chr5_-_168734296_168734296	0.231412	Hoxd1	ENSRNOT00000066120|Camta1|ENSRNOG00000018602|calmodulin binding transcription activator 1 [Source:RGD Symbol%3BAcc:1562703]
rn6_v1_chr12_-_35979193_35979193	0.227139	Hoxd1	ENSRNOT00000071104|Tmem132b|ENSRNOG00000038406|transmembrane protein 132B [Source:RGD Symbol%3BAcc:1566191]
rn6_v1_chr1_+_141767940_141767940	0.220464	Hoxd1	ENSRNOT00000064034|Zfp710|ENSRNOG00000014278|zinc finger protein 710 [Source:RGD Symbol%3BAcc:1306491]
rn6_v1_chr9_+_73378057_73378111	0.198313	Hoxd1	ENSRNOT00000043627|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]	ENSRNOT00000045766|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]	ENSRNOT00000092445|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]	ENSRNOT00000037974|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]
rn6_v1_chr3_+_56125924_56125924	0.190261	Hoxd1	ENSRNOT00000011380|Ubr3|ENSRNOG00000008616|ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol%3BAcc:1565257]
rn6_v1_chr14_+_42015347_42015347	0.18887	Hoxd1	ENSRNOT00000044017|Atp8a1|ENSRNOG00000034200|ATPase phospholipid transporting 8A1 [Source:RGD Symbol%3BAcc:1309619]
rn6_v1_chr16_-_10802512_10802512	0.184672	Hoxd1	ENSRNOT00000079554|Bmpr1a|ENSRNOG00000052469|bone morphogenetic protein receptor type 1A [Source:RGD Symbol%3BAcc:70989]
rn6_v1_chr12_-_45801842_45801842	0.183728	Hoxd1	ENSRNOT00000078837|AABR07036513.1|ENSRNOG00000059134|
rn6_v1_chr13_+_91054974_91054974	0.177686	Hoxd1	ENSRNOT00000091089|Crp|ENSRNOG00000000053|C-reactive protein [Source:RGD Symbol%3BAcc:2411]
rn6_v1_chr18_-_55891710_55891710	0.174789	Hoxd1	ENSRNOT00000064686|Synpo|ENSRNOG00000019181|synaptopodin [Source:RGD Symbol%3BAcc:620668]
rn6_v1_chr14_-_84751886_84751886	0.164954	Hoxd1	ENSRNOT00000078838|Mtmr3|ENSRNOG00000007120|myotubularin related protein 3 [Source:RGD Symbol%3BAcc:1310972]
rn6_v1_chr10_-_10881844_10881977	0.164536	Hoxd1	ENSRNOT00000087118|Mgrn1|ENSRNOG00000003234|mahogunin ring finger 1 [Source:RGD Symbol%3BAcc:1311862]	ENSRNOT00000004416|Mgrn1|ENSRNOG00000003234|mahogunin ring finger 1 [Source:RGD Symbol%3BAcc:1311862]
rn6_v1_chr2_-_33025271_33025271	0.162464	Hoxd1	ENSRNOT00000074941|NEWGENE_1310139|ENSRNOG00000027002|microtubule associated serine/threonine kinase family member 4 [Source:RGD Symbol%3BAcc:9344213]
rn6_v1_chr20_+_6211420_6211420	0.162026	Hoxd1	ENSRNOT00000000624|Kctd20|ENSRNOG00000000517|potassium channel tetramerization domain containing 20 [Source:RGD Symbol%3BAcc:1309887]
rn6_v1_chr16_+_7035068_7035068	0.158093	Hoxd1	ENSRNOT00000024296|Nek4|ENSRNOG00000017997|NIMA-related kinase 4 [Source:RGD Symbol%3BAcc:1304995]
rn6_v1_chr7_-_120770435_120770435	0.157545	Hoxd1	ENSRNOT00000077000|Ddx17|ENSRNOG00000051170|DEAD-box helicase 17 [Source:RGD Symbol%3BAcc:1304945]
rn6_v1_chr5_+_155934490_155934490	0.15683	Hoxd1	ENSRNOT00000077933|LOC100911993|ENSRNOG00000013602|ubiquitin carboxyl-terminal hydrolase 48-like [Source:RGD Symbol%3BAcc:6489246]
rn6_v1_chr9_+_10013854_10013930	0.153766	Hoxd1	ENSRNOT00000077653|Khsrp|ENSRNOG00000047628|KH-type splicing regulatory protein [Source:RGD Symbol%3BAcc:621828]	ENSRNOT00000072033|Khsrp|ENSRNOG00000047628|KH-type splicing regulatory protein [Source:RGD Symbol%3BAcc:621828]
rn6_v1_chr15_-_55209342_55209342	0.153487	Hoxd1	ENSRNOT00000021752|Rb1|ENSRNOG00000016029|RB transcriptional corepressor 1 [Source:RGD Symbol%3BAcc:3540]
rn6_v1_chr8_-_21492801_21492801	0.153383	Hoxd1	ENSRNOT00000077465|Zfp426|ENSRNOG00000033624|zinc finger protein 426 [Source:RGD Symbol%3BAcc:1590942]
rn6_v1_chr3_-_120076788_120076788	0.152938	Hoxd1	ENSRNOT00000047158|Kcnip3|ENSRNOG00000014152|potassium voltage-gated channel interacting protein 3 [Source:RGD Symbol%3BAcc:70888]
rn6_v1_chr8_+_40009691_40009691	0.150017	Hoxd1	ENSRNOT00000042679|Vsig2|ENSRNOG00000033490|V-set and immunoglobulin domain containing 2 [Source:RGD Symbol%3BAcc:1561274]
rn6_v1_chr1_+_99505677_99505677	0.145277	Hoxd1	ENSRNOT00000024645|Zfp719|ENSRNOG00000033729|zinc finger protein 719 [Source:RGD Symbol%3BAcc:2319483]
rn6_v1_chr6_+_104291071_104291071	0.132295	Hoxd1	ENSRNOT00000006798|Slc39a9|ENSRNOG00000005052|solute carrier family 39%2C member 9 [Source:RGD Symbol%3BAcc:1311236]
rn6_v1_chr17_-_87826421_87826421	0.129624	Hoxd1	ENSRNOT00000068156|Arhgap21|ENSRNOG00000008659|Rho GTPase activating protein 21 [Source:RGD Symbol%3BAcc:1311028]
rn6_v1_chr4_-_22424862_22424862	0.129092	Hoxd1	ENSRNOT00000082359|Abcb1a|ENSRNOG00000008012|ATP binding cassette subfamily B member 1A [Source:RGD Symbol%3BAcc:619951]
rn6_v1_chr4_+_88694583_88694583	0.12817	Hoxd1	ENSRNOT00000009202|Ppm1k|ENSRNOG00000006893|protein phosphatase%2C Mg2+/Mn2+ dependent%2C 1K [Source:RGD Symbol%3BAcc:1308501]
rn6_v1_chr9_+_67234303_67234303	0.126826	Hoxd1	ENSRNOT00000050179|Abi2|ENSRNOG00000017707|abl-interactor 2 [Source:RGD Symbol%3BAcc:628771]
rn6_v1_chr15_-_54528480_54528480	0.125153	Hoxd1	ENSRNOT00000066888|Fndc3a|ENSRNOG00000014478|fibronectin type III domain containing 3a [Source:RGD Symbol%3BAcc:1304736]
rn6_v1_chr1_+_140998240_140998260	0.123196	Hoxd1	ENSRNOT00000023506|Abhd2|ENSRNOG00000017120|abhydrolase domain containing 2 [Source:RGD Symbol%3BAcc:1311389]	ENSRNOT00000090897|Abhd2|ENSRNOG00000017120|abhydrolase domain containing 2 [Source:RGD Symbol%3BAcc:1311389]
rn6_v1_chr17_-_78812111_78812111	0.122295	Hoxd1	ENSRNOT00000021506|Dclre1c|ENSRNOG00000015980|DNA cross-link repair 1C [Source:RGD Symbol%3BAcc:708574]
rn6_v1_chr5_+_135574172_135574172	0.119065	Hoxd1	ENSRNOT00000023416|Tesk2|ENSRNOG00000017282|testis-specific kinase 2 [Source:RGD Symbol%3BAcc:619984]
rn6_v1_chr13_-_83457888_83457888	0.119041	Hoxd1	ENSRNOT00000076289|Sft2d2|ENSRNOG00000003038|SFT2 domain containing 2 [Source:RGD Symbol%3BAcc:1310623]	ENSRNOT00000004065|Sft2d2|ENSRNOG00000003038|SFT2 domain containing 2 [Source:RGD Symbol%3BAcc:1310623]
rn6_v1_chr1_+_217345545_217345545	0.116993	Hoxd1	ENSRNOT00000071741|Shank2|ENSRNOG00000050206|SH3 and multiple ankyrin repeat domains 2 [Source:RGD Symbol%3BAcc:628772]
rn6_v1_chr2_+_195996521_195996521	0.116758	Hoxd1	ENSRNOT00000082849|Pogz|ENSRNOG00000053599|pogo transposable element with ZNF domain [Source:RGD Symbol%3BAcc:1309980]
rn6_v1_chr18_-_43945273_43945273	0.116195	Hoxd1	ENSRNOT00000088900|Dtwd2|ENSRNOG00000059142|DTW domain containing 2 [Source:RGD Symbol%3BAcc:1306423]
rn6_v1_chr17_-_89923423_89923423	0.115199	Hoxd1	ENSRNOT00000076964|Acbd5|ENSRNOG00000017642|acyl-CoA binding domain containing 5 [Source:RGD Symbol%3BAcc:1309411]
rn6_v1_chr7_-_59547174_59547174	0.11518	Hoxd1	ENSRNOT00000085836|Cnot2|ENSRNOG00000004909|CCR4-NOT transcription complex%2C subunit 2 [Source:RGD Symbol%3BAcc:1311672]
rn6_v1_chr15_-_93765498_93765498	0.113735	Hoxd1	ENSRNOT00000093297|Mycbp2|ENSRNOG00000010479|MYC binding protein 2%2C E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:1312048]
rn6_v1_chr10_+_61685645_61685645	0.113147	Hoxd1	ENSRNOT00000003933|Mnt|ENSRNOG00000002894|MAX network transcriptional repressor [Source:RGD Symbol%3BAcc:1308683]
rn6_v1_chrX_-_69218526_69218556	0.108576	Hoxd1	ENSRNOT00000092321|Pja1|ENSRNOG00000047339|praja ring finger ubiquitin ligase 1 [Source:RGD Symbol%3BAcc:1591532]	ENSRNOT00000074071|Pja1|ENSRNOG00000047339|praja ring finger ubiquitin ligase 1 [Source:RGD Symbol%3BAcc:1591532]	ENSRNOT00000092571|Pja1|ENSRNOG00000047339|praja ring finger ubiquitin ligase 1 [Source:RGD Symbol%3BAcc:1591532]
rn6_v1_chr1_-_215033460_215033460	0.107691	Hoxd1	ENSRNOT00000044565|Dusp8|ENSRNOG00000029394|dual specificity phosphatase 8 [Source:RGD Symbol%3BAcc:1306425]
rn6_v1_chr9_+_16003058_16003058	0.106861	Hoxd1	ENSRNOT00000081621|Ubr2|ENSRNOG00000015813|ubiquitin protein ligase E3 component n-recognin 2 [Source:RGD Symbol%3BAcc:1593237]	ENSRNOT00000021158|Ubr2|ENSRNOG00000015813|ubiquitin protein ligase E3 component n-recognin 2 [Source:RGD Symbol%3BAcc:1593237]
rn6_v1_chr14_-_86387606_86387608	0.106696	Hoxd1	ENSRNOT00000089384|Ddx56|ENSRNOG00000004670|DEAD-box helicase 56 [Source:RGD Symbol%3BAcc:1303195]	ENSRNOT00000006642|Ddx56|ENSRNOG00000004670|DEAD-box helicase 56 [Source:RGD Symbol%3BAcc:1303195]
rn6_v1_chr4_-_126644895_126644895	0.103056	Hoxd1	ENSRNOT00000017384|Lrig1|ENSRNOG00000012952|leucine-rich repeats and immunoglobulin-like domains 1 [Source:RGD Symbol%3BAcc:1306788]	ENSRNOT00000072624|Lrig1|ENSRNOG00000012952|leucine-rich repeats and immunoglobulin-like domains 1 [Source:RGD Symbol%3BAcc:1306788]
rn6_v1_chr5_-_133959447_133959447	0.102426	Hoxd1	ENSRNOT00000011985|Cyp4x1|ENSRNOG00000043513|cytochrome P450%2C family 4%2C subfamily x%2C polypeptide 1 [Source:RGD Symbol%3BAcc:628719]
rn6_v1_chr12_+_6403940_6403940	0.101112	Hoxd1	ENSRNOT00000083484|B3glct|ENSRNOG00000061346|beta 3-glucosyltransferase [Source:RGD Symbol%3BAcc:1588723]
rn6_v1_chr9_+_66888393_66888393	0.0984998	Hoxd1	ENSRNOT00000023536|Carf|ENSRNOG00000017491|calcium responsive transcription factor [Source:RGD Symbol%3BAcc:1306822]
rn6_v1_chr5_-_147412705_147412705	0.096652	Hoxd1	ENSRNOT00000010688|RGD1561149|ENSRNOG00000008113|similar to mKIAA1522 protein [Source:RGD Symbol%3BAcc:1561149]
rn6_v1_chr8_-_82533689_82533689	0.0962182	Hoxd1	ENSRNOT00000014124|Tmod2|ENSRNOG00000010447|tropomodulin 2 [Source:RGD Symbol%3BAcc:61948]
rn6_v1_chr1_-_64147251_64147251	0.0959568	Hoxd1	ENSRNOT00000088502|Cnot3|ENSRNOG00000053234|CCR4-NOT transcription complex%2C subunit 3 [Source:RGD Symbol%3BAcc:1304771]
rn6_v1_chr16_+_59564419_59564419	0.0940486	Hoxd1	ENSRNOT00000083434|Lonrf1|ENSRNOG00000053706|LON peptidase N-terminal domain and ring finger 1 [Source:RGD Symbol%3BAcc:1562583]
rn6_v1_chr5_-_12526962_12526962	0.0924796	Hoxd1	ENSRNOT00000092104|St18|ENSRNOG00000006200|suppression of tumorigenicity 18 [Source:RGD Symbol%3BAcc:708566]
rn6_v1_chr20_-_13994794_13994794	0.0889432	Hoxd1	ENSRNOT00000093466|Ggt5|ENSRNOG00000062276|gamma-glutamyltransferase 5 [Source:RGD Symbol%3BAcc:2684]
rn6_v1_chr19_+_45938915_45938915	0.0864212	Hoxd1	ENSRNOT00000065508|Mon1b|ENSRNOG00000011552|MON1 homolog B%2C secretory trafficking associated [Source:RGD Symbol%3BAcc:1309977]
rn6_v1_chr2_-_149432106_149432106	0.086239	Hoxd1	ENSRNOT00000051027|P2ry13|ENSRNOG00000029756|purinergic receptor P2Y13 [Source:RGD Symbol%3BAcc:1302941]
rn6_v1_chr1_-_241046249_241046256	0.0844121	Hoxd1	ENSRNOT00000067796|Smc5|ENSRNOG00000030572|structural maintenance of chromosomes 5 [Source:RGD Symbol%3BAcc:1307492]	ENSRNOT00000081866|Smc5|ENSRNOG00000030572|structural maintenance of chromosomes 5 [Source:RGD Symbol%3BAcc:1307492]
rn6_v1_chr3_+_148654668_148654668	0.0806398	Hoxd1	ENSRNOT00000081370|Tm9sf4|ENSRNOG00000009406|transmembrane 9 superfamily member 4 [Source:RGD Symbol%3BAcc:1307768]
rn6_v1_chr1_+_80293566_80293566	0.0786699	Hoxd1	ENSRNOT00000024246|Ercc2|ENSRNOG00000017753|ERCC excision repair 2%2C TFIIH core complex helicase subunit [Source:RGD Symbol%3BAcc:1309109]
rn6_v1_chr5_-_164648328_164648328	0.0785832	Hoxd1	ENSRNOT00000090811|Zfp933|ENSRNOG00000056374|zinc finger protein 933 [Source:MGI Symbol%3BAcc:MGI:1922865]
rn6_v1_chr9_+_13446896_13446896	0.0779139	Hoxd1	ENSRNOT00000088651|Daam2|ENSRNOG00000053945|dishevelled associated activator of morphogenesis 2 [Source:RGD Symbol%3BAcc:1306128]
rn6_v1_chr4_+_157524423_157524423	0.0769403	Hoxd1	ENSRNOT00000036654|Zfp384|ENSRNOG00000017066|zinc finger protein 384 [Source:RGD Symbol%3BAcc:708346]
rn6_v1_chr11_-_51202703_51202820	0.0760659	Hoxd1	ENSRNOT00000002719|Cblb|ENSRNOG00000001982|Cbl proto-oncogene B [Source:RGD Symbol%3BAcc:620535]	ENSRNOT00000077220|Cblb|ENSRNOG00000001982|Cbl proto-oncogene B [Source:RGD Symbol%3BAcc:620535]
rn6_v1_chr10_+_103206014_103206014	0.074892	Hoxd1	ENSRNOT00000004081|Ttyh2|ENSRNOG00000024578|tweety family member 2 [Source:RGD Symbol%3BAcc:1562969]
rn6_v1_chr10_-_52290657_52290657	0.0748861	Hoxd1	ENSRNOT00000005293|Map2k4|ENSRNOG00000003834|mitogen activated protein kinase kinase 4 [Source:RGD Symbol%3BAcc:1307040]
rn6_v1_chr16_+_7035241_7035241	0.0734619	Hoxd1	ENSRNOT00000084977|Nek4|ENSRNOG00000017997|NIMA-related kinase 4 [Source:RGD Symbol%3BAcc:1304995]
rn6_v1_chr7_+_2752680_2752680	0.0720112	Hoxd1	ENSRNOT00000033726|Cs|ENSRNOG00000023520|citrate synthase [Source:RGD Symbol%3BAcc:620330]
rn6_v1_chr1_-_100926335_100926335	0.0702939	Hoxd1	ENSRNOT00000020304|Ap2a1|ENSRNOG00000026243|adaptor-related protein complex 2%2C alpha 1 subunit [Source:RGD Symbol%3BAcc:1306254]
rn6_v1_chr18_+_63203063_63203063	0.0702935	Hoxd1	ENSRNOT00000024144|Prelid3a|ENSRNOG00000017954|PRELI domain containing 3A [Source:RGD Symbol%3BAcc:1582858]
rn6_v1_chr7_-_114590119_114590119	0.0693643	Hoxd1	ENSRNOT00000079599|Ptk2|ENSRNOG00000007916|protein tyrosine kinase 2 [Source:RGD Symbol%3BAcc:3443]
rn6_v1_chr4_+_146455332_146455332	0.0693317	Hoxd1	ENSRNOT00000009775|Hrh1|ENSRNOG00000007420|histamine receptor H 1 [Source:RGD Symbol%3BAcc:2830]
rn6_v1_chr12_-_52658275_52658275	0.068984	Hoxd1	ENSRNOT00000041981|Zfp605|ENSRNOG00000037428|zinc finger protein 605 [Source:RGD Symbol%3BAcc:2318406]
rn6_v1_chr2_-_35870578_35870578	0.0689725	Hoxd1	ENSRNOT00000066069|Rnf180|ENSRNOG00000043329|ring finger protein 180 [Source:RGD Symbol%3BAcc:1595064]
rn6_v1_chr6_+_18880737_18880737	0.0681424	Hoxd1	ENSRNOT00000003432|Alkbh8|ENSRNOG00000024525|alkB homolog 8%2C tRNA methyltransferase [Source:RGD Symbol%3BAcc:1304687]
rn6_v1_chr6_-_108660063_108660063	0.0681179	Hoxd1	ENSRNOT00000006240|Arel1|ENSRNOG00000004382|apoptosis resistant E3 ubiquitin protein ligase 1 [Source:RGD Symbol%3BAcc:1307597]
rn6_v1_chr2_+_257626383_257626383	0.0677451	Hoxd1	ENSRNOT00000080993|Zzz3|ENSRNOG00000050321|zinc finger%2C ZZ-type containing 3 [Source:RGD Symbol%3BAcc:1565468]
rn6_v1_chr1_+_62133816_62133816	0.0665737	Hoxd1	ENSRNOT00000034746|LOC102555377|ENSRNOG00000026569|zinc finger protein 182-like [Source:RGD Symbol%3BAcc:7744154]
rn6_v1_chr3_+_56056925_56057043	0.0664778	Hoxd1	ENSRNOT00000088351|Klhl23|ENSRNOG00000007981|kelch-like family member 23 [Source:RGD Symbol%3BAcc:1307166]	ENSRNOT00000010508|Klhl23|ENSRNOG00000007981|kelch-like family member 23 [Source:RGD Symbol%3BAcc:1307166]
rn6_v1_chr1_+_15834779_15834878	0.0653407	Hoxd1	ENSRNOT00000079069|Bclaf1|ENSRNOG00000058050|BCL2-associated transcription factor 1 [Source:RGD Symbol%3BAcc:1309704]	ENSRNOT00000083012|Bclaf1|ENSRNOG00000058050|BCL2-associated transcription factor 1 [Source:RGD Symbol%3BAcc:1309704]
rn6_v1_chr3_-_66335869_66335869	0.0652645	Hoxd1	ENSRNOT00000079781|Cerkl|ENSRNOG00000030212|ceramide kinase-like [Source:RGD Symbol%3BAcc:1561057]	ENSRNOT00000043238|Cerkl|ENSRNOG00000030212|ceramide kinase-like [Source:RGD Symbol%3BAcc:1561057]	ENSRNOT00000073412|Cerkl|ENSRNOG00000030212|ceramide kinase-like [Source:RGD Symbol%3BAcc:1561057]	ENSRNOT00000057878|Cerkl|ENSRNOG00000030212|ceramide kinase-like [Source:RGD Symbol%3BAcc:1561057]	ENSRNOT00000079212|Cerkl|ENSRNOG00000030212|ceramide kinase-like [Source:RGD Symbol%3BAcc:1561057]
rn6_v1_chr8_-_8524643_8524643	0.0645031	Hoxd1	ENSRNOT00000009418|Cntn5|ENSRNOG00000007038|contactin 5 [Source:RGD Symbol%3BAcc:621302]
rn6_v1_chr5_-_7941822_7941822	0.0637659	Hoxd1	ENSRNOT00000079917|Prex2|ENSRNOG00000005391|phosphatidylinositol-3%2C4%2C5-trisphosphate-dependent Rac exchange factor 2 [Source:RGD Symbol%3BAcc:1307865]
rn6_v1_chr1_+_1545134_1545134	0.0635774	Hoxd1	ENSRNOT00000044523|AABR07000156.1|ENSRNOG00000029897|
rn6_v1_chr17_+_77601877_77601914	0.0635249	Hoxd1	ENSRNOT00000091554|Prpf18|ENSRNOG00000018396|pre-mRNA processing factor 18 [Source:RGD Symbol%3BAcc:708550]	ENSRNOT00000024872|Prpf18|ENSRNOG00000018396|pre-mRNA processing factor 18 [Source:RGD Symbol%3BAcc:708550]
rn6_v1_chr15_-_88670349_88670349	0.0631254	Hoxd1	ENSRNOT00000012881|Rnf219|ENSRNOG00000009690|ring finger protein 219 [Source:RGD Symbol%3BAcc:1564706]
rn6_v1_chr10_+_35870232_35870232	0.061819	Hoxd1	ENSRNOT00000078505|Hnrnph1|ENSRNOG00000003399|heterogeneous nuclear ribonucleoprotein H1 [Source:RGD Symbol%3BAcc:620840]
rn6_v1_chrX_-_65102344_65102380	0.0609031	Hoxd1	ENSRNOT00000016042|Las1l|ENSRNOG00000021748|LAS1-like%2C ribosome biogenesis factor [Source:RGD Symbol%3BAcc:1565755]	ENSRNOT00000075875|Las1l|ENSRNOG00000021748|LAS1-like%2C ribosome biogenesis factor [Source:RGD Symbol%3BAcc:1565755]
rn6_v1_chr1_-_38538987_38538987	0.0598628	Hoxd1	ENSRNOT00000090406|LOC102551340|ENSRNOG00000047145|zinc finger protein 728-like [Source:RGD Symbol%3BAcc:7697243]	ENSRNOT00000071275|LOC102551340|ENSRNOG00000047145|zinc finger protein 728-like [Source:RGD Symbol%3BAcc:7697243]
rn6_v1_chr1_+_253221812_253221813	0.0588725	Hoxd1	ENSRNOT00000085880|Kif20b|ENSRNOG00000018929|kinesin family member 20B [Source:RGD Symbol%3BAcc:1308497]	ENSRNOT00000054753|Kif20b|ENSRNOG00000018929|kinesin family member 20B [Source:RGD Symbol%3BAcc:1308497]
rn6_v1_chr14_+_45982244_45982311	0.0579896	Hoxd1	ENSRNOT00000076881|Rell1|ENSRNOG00000002192|RELT-like 1 [Source:RGD Symbol%3BAcc:1307468]	ENSRNOT00000002984|Rell1|ENSRNOG00000002192|RELT-like 1 [Source:RGD Symbol%3BAcc:1307468]
rn6_v1_chr4_-_176606382_176606382	0.0569742	Hoxd1	ENSRNOT00000065576|Recql|ENSRNOG00000012602|RecQ like helicase [Source:RGD Symbol%3BAcc:1311071]
rn6_v1_chr12_-_24775891_24775891	0.056846	Hoxd1	ENSRNOT00000074851|Wbscr27|ENSRNOG00000046700|Williams Beuren syndrome chromosome region 27 [Source:RGD Symbol%3BAcc:1588881]
rn6_v1_chrX_-_159841072_159841072	0.0562812	Hoxd1	ENSRNOT00000001158|Arhgef6|ENSRNOG00000000869|Rac/Cdc42 guanine nucleotide exchange factor 6 [Source:RGD Symbol%3BAcc:1359674]
rn6_v1_chr4_-_62860446_62860446	0.0544085	Hoxd1	ENSRNOT00000015752|Fam180a|ENSRNOG00000011750|family with sequence similarity 180%2C member A [Source:RGD Symbol%3BAcc:1308013]
rn6_v1_chr15_+_42808897_42808897	0.0543225	Hoxd1	ENSRNOT00000023475|Chrna2|ENSRNOG00000017424|cholinergic receptor nicotinic alpha 2 subunit [Source:RGD Symbol%3BAcc:621533]
rn6_v1_chr3_-_90751055_90751055	0.0541346	Hoxd1	ENSRNOT00000040741|LOC499843|ENSRNOG00000032177|LRRGT00091 [Source:RGD Symbol%3BAcc:1560877]
rn6_v1_chr1_-_78180216_78180216	0.0532315	Hoxd1	ENSRNOT00000071576|C5ar2|ENSRNOG00000049028|complement component 5a receptor 2 [Source:RGD Symbol%3BAcc:1303027]
rn6_v1_chr2_+_122877286_122877286	0.0525469	Hoxd1	ENSRNOT00000033080|Arse|ENSRNOG00000028350|arylsulfatase E [Source:RGD Symbol%3BAcc:1304917]
rn6_v1_chr18_+_30840868_30840868	0.0518181	Hoxd1	ENSRNOT00000027026|Pcdhga5|ENSRNOG00000027299|protocadherin gamma subfamily A%2C 5 [Source:RGD Symbol%3BAcc:1311949]
rn6_v1_chr4_-_55011415_55011415	0.0514046	Hoxd1	ENSRNOT00000056996|Grm8|ENSRNOG00000021468|glutamate metabotropic receptor 8 [Source:RGD Symbol%3BAcc:619858]
rn6_v1_chr2_+_86996497_86996497	0.0508447	Hoxd1	ENSRNOT00000042058|Zfp455|ENSRNOG00000031576|zinc finger protein 455 [Source:RGD Symbol%3BAcc:628788]
rn6_v1_chr6_+_80108655_80108655	0.0503403	Hoxd1	ENSRNOT00000006137|Gemin2|ENSRNOG00000004360|gem (nuclear organelle) associated protein 2 [Source:RGD Symbol%3BAcc:620842]
rn6_v1_chr3_-_15278645_15278645	0.048529	Hoxd1	ENSRNOT00000032204|Ttll11|ENSRNOG00000019339|tubulin tyrosine ligase like11 [Source:RGD Symbol%3BAcc:1588742]
rn6_v1_chr11_+_47146308_47146308	0.0479051	Hoxd1	ENSRNOT00000002191|Cep97|ENSRNOG00000001609|centrosomal protein 97 [Source:RGD Symbol%3BAcc:1307400]
rn6_v1_chr2_-_210088949_210088949	0.0477808	Hoxd1	ENSRNOT00000070994|Rbm15|ENSRNOG00000047499|RNA binding motif protein 15 [Source:RGD Symbol%3BAcc:1592713]
rn6_v1_chr10_-_87286387_87286387	0.0476604	Hoxd1	ENSRNOT00000044206|Krt28|ENSRNOG00000011846|keratin 28 [Source:RGD Symbol%3BAcc:1309530]
rn6_v1_chr10_-_65502936_65502936	0.047551	Hoxd1	ENSRNOT00000089615|Supt6h|ENSRNOG00000012240|SPT6 homolog%2C histone chaperone [Source:RGD Symbol%3BAcc:1309290]
rn6_v1_chr1_+_101603222_101603222	0.0472765	Hoxd1	ENSRNOT00000033278|Izumo1|ENSRNOG00000024678|izumo sperm-egg fusion 1 [Source:RGD Symbol%3BAcc:1565454]
rn6_v1_chr2_+_220432037_220432037	0.0468165	Hoxd1	ENSRNOT00000021988|Frrs1|ENSRNOG00000016351|ferric-chelate reductase 1 [Source:RGD Symbol%3BAcc:1306883]
rn6_v1_chr7_-_83670356_83670356	0.0467146	Hoxd1	ENSRNOT00000005584|Sybu|ENSRNOG00000004200|syntabulin [Source:RGD Symbol%3BAcc:1564335]
rn6_v1_chr13_-_89545182_89545182	0.0463231	Hoxd1	ENSRNOT00000078402|Pcp4l1|ENSRNOG00000003209|Purkinje cell protein 4-like 1 [Source:RGD Symbol%3BAcc:1593809]
rn6_v1_chr2_+_66940057_66940057	0.0454514	Hoxd1	ENSRNOT00000043050|Cdh9|ENSRNOG00000033837|cadherin 9 [Source:RGD Symbol%3BAcc:1308343]
rn6_v1_chr3_-_133122691_133122691	0.0450702	Hoxd1	ENSRNOT00000083637|Tasp1|ENSRNOG00000004493|taspase 1 [Source:RGD Symbol%3BAcc:1308591]
rn6_v1_chr12_-_46493203_46493203	0.0445841	Hoxd1	ENSRNOT00000057036|Cit|ENSRNOG00000001143|citron rho-interacting serine/threonine kinase [Source:RGD Symbol%3BAcc:70878]
rn6_v1_chrX_+_6273733_6273733	0.0444071	Hoxd1	ENSRNOT00000074275|Ndp|ENSRNOG00000046042|NDP%2C norrin cystine knot growth factor [Source:RGD Symbol%3BAcc:1563968]
rn6_v1_chr1_-_261179790_261179790	0.0437916	Hoxd1	ENSRNOT00000074420|Exosc1|ENSRNOG00000048708|exosome component 1 [Source:RGD Symbol%3BAcc:1591855]	ENSRNOT00000072073|Exosc1|ENSRNOG00000048708|exosome component 1 [Source:RGD Symbol%3BAcc:1591855]
rn6_v1_chr1_-_252808380_252808380	0.0427673	Hoxd1	ENSRNOT00000025856|Ch25h|ENSRNOG00000019141|cholesterol 25-hydroxylase [Source:RGD Symbol%3BAcc:1310575]
rn6_v1_chr1_+_260093641_260093641	0.042376	Hoxd1	ENSRNOT00000019521|Ccnj|ENSRNOG00000014551|cyclin J [Source:RGD Symbol%3BAcc:1306399]
rn6_v1_chr7_+_15422479_15422479	0.0421387	Hoxd1	ENSRNOT00000066520|Zfp563|ENSRNOG00000030273|zinc finger protein 563 [Source:RGD Symbol%3BAcc:1308729]
rn6_v1_chr6_+_104291340_104291340	0.0417707	Hoxd1	ENSRNOT00000089313|Slc39a9|ENSRNOG00000005052|solute carrier family 39%2C member 9 [Source:RGD Symbol%3BAcc:1311236]
rn6_v1_chr1_-_255976425_255976425	0.0416245	Hoxd1	ENSRNOT00000085303|Ide|ENSRNOG00000016833|insulin degrading enzyme [Source:RGD Symbol%3BAcc:2861]
rn6_v1_chr8_+_32188617_32188617	0.040872	Hoxd1	ENSRNOT00000081145|Zbtb44|ENSRNOG00000005578|zinc finger and BTB domain containing 44 [Source:RGD Symbol%3BAcc:1308984]
rn6_v1_chr4_+_2053712_2053712	0.0404524	Hoxd1	ENSRNOT00000045086|Rnf32|ENSRNOG00000005691|ring finger protein 32 [Source:RGD Symbol%3BAcc:1308287]
rn6_v1_chr2_+_248398917_248398917	0.0390336	Hoxd1	ENSRNOT00000045855|Gbp1|ENSRNOG00000023943|guanylate binding protein 1 [Source:RGD Symbol%3BAcc:1311877]
rn6_v1_chr11_+_68633160_68633160	0.0387756	Hoxd1	ENSRNOT00000063795|Sec22a|ENSRNOG00000043069|SEC22 homolog A%2C vesicle trafficking protein [Source:RGD Symbol%3BAcc:621659]
rn6_v1_chr6_-_108076186_108076186	0.0383561	Hoxd1	ENSRNOT00000014814|Fam161b|ENSRNOG00000011112|family with sequence similarity 161%2C member B [Source:RGD Symbol%3BAcc:1309058]
rn6_v1_chr1_+_224998172_224998172	0.0381904	Hoxd1	ENSRNOT00000026321|Zbtb3|ENSRNOG00000019461|zinc finger and BTB domain containing 3 [Source:RGD Symbol%3BAcc:1561140]
rn6_v1_chr5_+_6373583_6373583	0.0378015	Hoxd1	ENSRNOT00000084749|AABR07046778.1|ENSRNOG00000058589|
rn6_v1_chr6_+_8284878_8284878	0.037266	Hoxd1	ENSRNOT00000009581|Slc3a1|ENSRNOG00000007006|solute carrier family 3 member 1 [Source:RGD Symbol%3BAcc:3709]
rn6_v1_chr13_-_76049363_76049363	0.0370469	Hoxd1	ENSRNOT00000075865|Brinp2|ENSRNOG00000005592|BMP/retinoic acid inducible neural specific 2 [Source:RGD Symbol%3BAcc:708419]	ENSRNOT00000007455|Brinp2|ENSRNOG00000005592|BMP/retinoic acid inducible neural specific 2 [Source:RGD Symbol%3BAcc:708419]
rn6_v1_chr4_+_31229913_31229913	0.0367826	Hoxd1	ENSRNOT00000077134|Samd9l|ENSRNOG00000051922|sterile alpha motif domain containing 9-like [Source:MGI Symbol%3BAcc:MGI:1343184]	ENSRNOT00000087897|Samd9l|ENSRNOG00000051922|sterile alpha motif domain containing 9-like [Source:MGI Symbol%3BAcc:MGI:1343184]
rn6_v1_chrM_+_9870_9870	0.0367097	Hoxd1	ENSRNOT00000044582|Mt-nd4l|ENSRNOG00000031053|mitochondrially encoded NADH 4L dehydrogenase [Source:RGD Symbol%3BAcc:620494]
rn6_v1_chr5_-_50068706_50068706	0.0355613	Hoxd1	ENSRNOT00000084643|Orc3|ENSRNOG00000008314|origin recognition complex%2C subunit 3 [Source:RGD Symbol%3BAcc:1308457]
rn6_v1_chr3_+_128155069_128155117	0.035432	Hoxd1	ENSRNOT00000051184|Plcb1|ENSRNOG00000004810|phospholipase C beta 1 [Source:RGD Symbol%3BAcc:3344]	ENSRNOT00000006389|Plcb1|ENSRNOG00000004810|phospholipase C beta 1 [Source:RGD Symbol%3BAcc:3344]
rn6_v1_chr5_-_171262119_171262119	0.033965	Hoxd1	ENSRNOT00000032825|Dffb|ENSRNOG00000025030|DNA fragmentation factor subunit beta [Source:RGD Symbol%3BAcc:620335]
rn6_v1_chr10_-_78219793_78219793	0.0339553	Hoxd1	ENSRNOT00000003369|Tom1l1|ENSRNOG00000002474|target of myb1 like 1 membrane trafficking protein [Source:RGD Symbol%3BAcc:1562626]
rn6_v1_chr1_+_261180007_261180007	0.0338229	Hoxd1	ENSRNOT00000072181|Zdhhc16|ENSRNOG00000046530|zinc finger%2C DHHC-type containing 16 [Source:RGD Symbol%3BAcc:1591893]
rn6_v1_chr14_+_34446616_34446616	0.0334837	Hoxd1	ENSRNOT00000002976|Clock|ENSRNOG00000002175|clock circadian regulator [Source:RGD Symbol%3BAcc:620271]
rn6_v1_chr15_+_87722221_87722221	0.0319892	Hoxd1	ENSRNOT00000082688|Scel|ENSRNOG00000024237|sciellin [Source:RGD Symbol%3BAcc:1305102]
rn6_v1_chr10_-_110274768_110274768	0.0317943	Hoxd1	ENSRNOT00000054931|Sectm1a|ENSRNOG00000036672|secreted and transmembrane 1A [Source:RGD Symbol%3BAcc:1305973]
rn6_v1_chrX_+_88298266_88298266	0.0317326	Hoxd1	ENSRNOT00000041508|AABR07039936.1|ENSRNOG00000037770|
rn6_v1_chr1_+_101554642_101554642	0.0311464	Hoxd1	ENSRNOT00000028474|Bcat2|ENSRNOG00000020956|branched chain amino acid transaminase 2 [Source:RGD Symbol%3BAcc:68948]
rn6_v1_chr16_-_32439421_32439421	0.0311262	Hoxd1	ENSRNOT00000043100|Nek1|ENSRNOG00000010418|NIMA-related kinase 1 [Source:RGD Symbol%3BAcc:1309375]
rn6_v1_chr11_-_82893845_82893845	0.0295078	Hoxd1	ENSRNOT00000075306|LOC100912571|ENSRNOG00000049598|eukaryotic translation initiation factor 4 gamma 1-like [Source:RGD Symbol%3BAcc:6486329]
rn6_v1_chr1_-_67390141_67390141	0.0290753	Hoxd1	ENSRNOT00000025808|Sbk1|ENSRNOG00000019082|SH3 domain binding kinase 1 [Source:RGD Symbol%3BAcc:628713]
rn6_v1_chr17_-_27279260_27279260	0.0288827	Hoxd1	ENSRNOT00000018508|Snrnp48|ENSRNOG00000013756|small nuclear ribonucleoprotein U11/U12 subunit 48 [Source:RGD Symbol%3BAcc:1309020]
rn6_v1_chr18_-_26656879_26656879	0.0275374	Hoxd1	ENSRNOT00000086729|Epb41l4a|ENSRNOG00000026050|erythrocyte membrane protein band 4.1 like 4A [Source:RGD Symbol%3BAcc:1306034]
rn6_v1_chr3_+_21764377_21764377	0.0273526	Hoxd1	ENSRNOT00000063938|Gpr21|ENSRNOG00000042269|G protein-coupled receptor 21 [Source:RGD Symbol%3BAcc:1586383]
rn6_v1_chr8_+_103938520_103938520	0.0272183	Hoxd1	ENSRNOT00000067835|Gk5|ENSRNOG00000010942|glycerol kinase 5 (putative) [Source:RGD Symbol%3BAcc:1311223]
rn6_v1_chr16_+_6048004_6048004	0.0270814	Hoxd1	ENSRNOT00000020750|Actr8|ENSRNOG00000015280|ARP8 actin-related protein 8 homolog [Source:RGD Symbol%3BAcc:1311878]
rn6_v1_chr3_+_129885826_129885826	0.0267569	Hoxd1	ENSRNOT00000009743|Slx4ip|ENSRNOG00000007430|SLX4 interacting protein [Source:RGD Symbol%3BAcc:1563120]
rn6_v1_chrX_+_84064427_84064427	0.026581	Hoxd1	ENSRNOT00000046364|Zfp711|ENSRNOG00000022391|zinc finger protein 711 [Source:RGD Symbol%3BAcc:1562768]
rn6_v1_chr11_-_43022565_43022565	0.0265185	Hoxd1	ENSRNOT00000002285|Riox2|ENSRNOG00000001680|ribosomal oxygenase 2 [Source:RGD Symbol%3BAcc:708521]
rn6_v1_chr1_-_197801634_197801634	0.0261224	Hoxd1	ENSRNOT00000090200|Nfatc2ip|ENSRNOG00000057384|nuclear factor of activated T-cells 2 interacting protein [Source:RGD Symbol%3BAcc:1359096]
rn6_v1_chr4_+_147832136_147832136	0.0254173	Hoxd1	ENSRNOT00000064603|Rho|ENSRNOG00000011144|rhodopsin [Source:RGD Symbol%3BAcc:3573]
rn6_v1_chr7_+_2635743_2635743	0.0253778	Hoxd1	ENSRNOT00000004223|Mip|ENSRNOG00000003132|major intrinsic protein of lens fiber [Source:RGD Symbol%3BAcc:3090]
rn6_v1_chr7_+_83564563_83564563	0.0247258	Hoxd1	ENSRNOT00000005705|Ebag9|ENSRNOG00000004220|estrogen receptor binding site associated%2C antigen%2C 9 [Source:RGD Symbol%3BAcc:1307293]
rn6_v1_chr1_+_255579474_255579474	0.0242535	Hoxd1	ENSRNOT00000024465|Btaf1|ENSRNOG00000017938|B-TFIID TATA-box binding protein associated factor 1 [Source:RGD Symbol%3BAcc:1564130]
rn6_v1_chr17_-_84247038_84247038	0.0241437	Hoxd1	ENSRNOT00000068553|Nebl|ENSRNOG00000049452|nebulette [Source:RGD Symbol%3BAcc:1308315]
rn6_v1_chr4_-_88684415_88684415	0.0239895	Hoxd1	ENSRNOT00000009001|LOC500148|ENSRNOG00000038471|similar to 40S ribosomal protein S7 (S8) [Source:RGD Symbol%3BAcc:1563162]
rn6_v1_chr1_-_198450047_198450047	0.0238781	Hoxd1	ENSRNOT00000027360|Mvp|ENSRNOG00000020182|major vault protein [Source:RGD Symbol%3BAcc:70932]
rn6_v1_chr2_+_86996798_86996798	0.0228543	Hoxd1	ENSRNOT00000070821|Zfp455|ENSRNOG00000031576|zinc finger protein 455 [Source:RGD Symbol%3BAcc:628788]
rn6_v1_chr1_-_67065797_67065797	0.0223349	Hoxd1	ENSRNOT00000048152|Vom1r46|ENSRNOG00000032817|vomeronasal 1 receptor 46 [Source:RGD Symbol%3BAcc:1359306]
rn6_v1_chr20_+_3155652_3155652	0.0223054	Hoxd1	ENSRNOT00000042882|RT1-S2|ENSRNOG00000029001|RT1 class Ib%2C locus S2 [Source:RGD Symbol%3BAcc:1595920]
rn6_v1_chr12_+_19328957_19328957	0.0220581	Hoxd1	ENSRNOT00000033288|Cnpy4|ENSRNOG00000027175|canopy FGF signaling regulator 4 [Source:RGD Symbol%3BAcc:1307636]
rn6_v1_chr2_+_93669765_93669765	0.0219217	Hoxd1	ENSRNOT00000045438|Slc10a5|ENSRNOG00000032426|solute carrier family 10%2C member 5 [Source:RGD Symbol%3BAcc:1306036]
rn6_v1_chr11_-_69316848_69316848	0.0214474	Hoxd1	ENSRNOT00000033420|Ccdc14|ENSRNOG00000021469|coiled-coil domain containing 14 [Source:RGD Symbol%3BAcc:1562189]
rn6_v1_chr3_-_57607683_57607683	0.0213381	Hoxd1	ENSRNOT00000093222|Mettl8|ENSRNOG00000009382|methyltransferase like 8 [Source:RGD Symbol%3BAcc:1561059]	ENSRNOT00000058524|Mettl8|ENSRNOG00000009382|methyltransferase like 8 [Source:RGD Symbol%3BAcc:1561059]
rn6_v1_chr15_+_33885106_33885106	0.0204363	Hoxd1	ENSRNOT00000024483|Dhrs2|ENSRNOG00000018177|dehydrogenase/reductase 2 [Source:RGD Symbol%3BAcc:1583909]
rn6_v1_chr1_+_68436917_68436917	0.0202542	Hoxd1	ENSRNOT00000088586|LOC108348118|ENSRNOG00000055229|leucyl-cystinyl aminopeptidase [Source:RGD Symbol%3BAcc:11480606]
rn6_v1_chr10_-_34242985_34242985	0.0201129	Hoxd1	ENSRNOT00000046438|RGD1559575|ENSRNOG00000032396|similar to novel protein [Source:RGD Symbol%3BAcc:1559575]
rn6_v1_chr5_+_187312_187312	0.0196829	Hoxd1	ENSRNOT00000030857|LOC102557117|ENSRNOG00000047922|zinc finger protein 120-like [Source:RGD Symbol%3BAcc:7665176]
rn6_v1_chr5_-_144996431_144996431	0.0193637	Hoxd1	ENSRNOT00000016992|Zmym4|ENSRNOG00000012397|zinc finger MYM-type containing 4 [Source:RGD Symbol%3BAcc:1309545]
rn6_v1_chr8_+_117297670_117297670	0.0193349	Hoxd1	ENSRNOT00000082628|Qars|ENSRNOG00000060912|glutaminyl-tRNA synthetase [Source:RGD Symbol%3BAcc:1359448]
rn6_v1_chr16_+_23553647_23553647	0.0192981	Hoxd1	ENSRNOT00000041994|Psd3|ENSRNOG00000013884|pleckstrin and Sec7 domain containing 3 [Source:RGD Symbol%3BAcc:1559968]
rn6_v1_chr2_-_57935334_57935363	0.0190924	Hoxd1	ENSRNOT00000022319|Slc1a3|ENSRNOG00000016163|solute carrier family 1 member 3 [Source:RGD Symbol%3BAcc:3698]	ENSRNOT00000085599|Slc1a3|ENSRNOG00000016163|solute carrier family 1 member 3 [Source:RGD Symbol%3BAcc:3698]	ENSRNOT00000077790|Slc1a3|ENSRNOG00000016163|solute carrier family 1 member 3 [Source:RGD Symbol%3BAcc:3698]	ENSRNOT00000035821|Slc1a3|ENSRNOG00000016163|solute carrier family 1 member 3 [Source:RGD Symbol%3BAcc:3698]
rn6_v1_chr12_-_45116665_45116665	0.0185672	Hoxd1	ENSRNOT00000089043|Taok3|ENSRNOG00000001138|TAO kinase 3 [Source:RGD Symbol%3BAcc:1562861]
rn6_v1_chr2_+_119112513_119112513	0.0178283	Hoxd1	ENSRNOT00000015460|Actl6a|ENSRNOG00000011553|actin-like 6A [Source:RGD Symbol%3BAcc:1307747]
rn6_v1_chr1_+_68436593_68436593	0.0164585	Hoxd1	ENSRNOT00000080325|LOC108348118|ENSRNOG00000055229|leucyl-cystinyl aminopeptidase [Source:RGD Symbol%3BAcc:11480606]
rn6_v1_chr7_+_91384187_91384187	0.0160945	Hoxd1	ENSRNOT00000005828|Utp23|ENSRNOG00000004387|UTP23%2C small subunit processome component [Source:RGD Symbol%3BAcc:1307179]
rn6_v1_chr16_+_71738718_71738718	0.0158596	Hoxd1	ENSRNOT00000022097|Plekha2|ENSRNOG00000038365|pleckstrin homology domain containing A2 [Source:RGD Symbol%3BAcc:1586710]
rn6_v1_chr5_+_58995249_58995249	0.0157692	Hoxd1	ENSRNOT00000023411|Ccdc107|ENSRNOG00000017253|coiled-coil domain containing 107 [Source:RGD Symbol%3BAcc:1560252]
rn6_v1_chr16_-_19308842_19308842	0.0151707	Hoxd1	ENSRNOT00000019556|Fam32a|ENSRNOG00000039528|family with sequence similarity 32%2C member A [Source:RGD Symbol%3BAcc:1561287]
rn6_v1_chr6_-_111417813_111417954	0.0148209	Hoxd1	ENSRNOT00000016324|Sptlc2|ENSRNOG00000012210|serine palmitoyltransferase%2C long chain base subunit 2 [Source:RGD Symbol%3BAcc:1305447]	ENSRNOT00000085458|Sptlc2|ENSRNOG00000012210|serine palmitoyltransferase%2C long chain base subunit 2 [Source:RGD Symbol%3BAcc:1305447]
rn6_v1_chr19_+_39229754_39229754	0.014293	Hoxd1	ENSRNOT00000050612|Vps4a|ENSRNOG00000020351|vacuolar protein sorting 4 homolog A [Source:RGD Symbol%3BAcc:628810]
rn6_v1_chr8_+_107495366_107495366	0.0137852	Hoxd1	ENSRNOT00000056590|Cep70|ENSRNOG00000022845|centrosomal protein 70 [Source:RGD Symbol%3BAcc:1561486]
rn6_v1_chr10_+_1834518_1834518	0.0118728	Hoxd1	ENSRNOT00000061709|Gm1758|ENSRNOG00000040121|predicted gene 1758 [Source:MGI Symbol%3BAcc:MGI:2686604]
rn6_v1_chr1_-_233145924_233145941	0.0118102	Hoxd1	ENSRNOT00000018763|Psat1|ENSRNOG00000013971|phosphoserine aminotransferase 1 [Source:RGD Symbol%3BAcc:735170]	ENSRNOT00000082442|Psat1|ENSRNOG00000013971|phosphoserine aminotransferase 1 [Source:RGD Symbol%3BAcc:735170]
rn6_v1_chr10_+_35870682_35870682	0.0115248	Hoxd1	ENSRNOT00000067188|Hnrnph1|ENSRNOG00000003399|heterogeneous nuclear ribonucleoprotein H1 [Source:RGD Symbol%3BAcc:620840]
rn6_v1_chr2_-_60657712_60657712	0.011408	Hoxd1	ENSRNOT00000040348|Rai14|ENSRNOG00000028872|retinoic acid induced 14 [Source:RGD Symbol%3BAcc:1305942]
rn6_v1_chr10_-_65437143_65437143	0.0113003	Hoxd1	ENSRNOT00000017264|Nek8|ENSRNOG00000012866|NIMA-related kinase 8 [Source:RGD Symbol%3BAcc:1306897]
rn6_v1_chr8_-_96547568_96547568	0.0107997	Hoxd1	ENSRNOT00000078343|RGD1560775|ENSRNOG00000042726|similar to RIKEN cDNA 4930579C12 gene [Source:RGD Symbol%3BAcc:1560775]
rn6_v1_chr2_+_195684210_195684210	0.0104958	Hoxd1	ENSRNOT00000028316|mrpl9|ENSRNOG00000020869|mitochondrial ribosomal protein L9 [Source:RGD Symbol%3BAcc:1359171]
rn6_v1_chr9_-_30844199_30844199	0.0104046	Hoxd1	ENSRNOT00000017169|Col19a1|ENSRNOG00000012759|collagen type XIX alpha 1 chain [Source:RGD Symbol%3BAcc:1308920]
rn6_v1_chr13_-_90405591_90405591	0.0091794	Hoxd1	ENSRNOT00000006849|Vangl2|ENSRNOG00000004889|VANGL planar cell polarity protein 2 [Source:RGD Symbol%3BAcc:1309442]
rn6_v1_chr2_+_195651930_195651930	0.0087296	Hoxd1	ENSRNOT00000028299|Tdrkh|ENSRNOG00000020860|tudor and KH domain containing [Source:RGD Symbol%3BAcc:1311196]
rn6_v1_chr8_-_83421612_83421612	0.00869692	Hoxd1	ENSRNOT00000015824|Hcrtr2|ENSRNOG00000011251|hypocretin receptor 2 [Source:RGD Symbol%3BAcc:2788]
rn6_v1_chr16_+_74785281_74785281	0.00829058	Hoxd1	ENSRNOT00000064316|Nek3|ENSRNOG00000012757|NIMA-related kinase 3 [Source:RGD Symbol%3BAcc:1307419]	ENSRNOT00000017106|Nek3|ENSRNOG00000012757|NIMA-related kinase 3 [Source:RGD Symbol%3BAcc:1307419]	ENSRNOT00000090646|Nek3|ENSRNOG00000012757|NIMA-related kinase 3 [Source:RGD Symbol%3BAcc:1307419]
rn6_v1_chr5_+_36566783_36566783	0.008247	Hoxd1	ENSRNOT00000077650|Fbxl4|ENSRNOG00000005641|F-box and leucine-rich repeat protein 4 [Source:RGD Symbol%3BAcc:1305724]
rn6_v1_chr8_+_113936991_113936991	0.00738662	Hoxd1	ENSRNOT00000017743|Aste1|ENSRNOG00000013059|asteroid homolog 1 (Drosophila) [Source:RGD Symbol%3BAcc:1304643]
rn6_v1_chr20_-_3344286_3344286	0.00704871	Hoxd1	ENSRNOT00000091505|Ppp1r10|ENSRNOG00000059268|protein phosphatase 1%2C regulatory subunit 10 [Source:RGD Symbol%3BAcc:620079]
rn6_v1_chr4_-_129619142_129619142	0.00697793	Hoxd1	ENSRNOT00000047453|Lmod3|ENSRNOG00000032443|leiomodin 3 [Source:RGD Symbol%3BAcc:1564924]
rn6_v1_chr5_+_153976535_153976535	0.00603459	Hoxd1	ENSRNOT00000030881|LOC500567|ENSRNOG00000026676|similar to RIKEN cDNA 1700029M20 [Source:RGD Symbol%3BAcc:1566032]
rn6_v1_chr2_-_192027225_192027225	0.00600288	Hoxd1	ENSRNOT00000016430|Prr9|ENSRNOG00000012312|proline rich 9 [Source:RGD Symbol%3BAcc:2320351]
rn6_v1_chr5_+_148577332_148577332	0.0053529	Hoxd1	ENSRNOT00000016325|Snrnp40|ENSRNOG00000012219|small nuclear ribonucleoprotein U5 subunit 40 [Source:RGD Symbol%3BAcc:1309198]
rn6_v1_chr10_-_82117109_82117109	0.0052497	Hoxd1	ENSRNOT00000079711|Abcc3|ENSRNOG00000002948|ATP binding cassette subfamily C member 3 [Source:RGD Symbol%3BAcc:71101]
rn6_v1_chr4_+_176606649_176606649	0.00512966	Hoxd1	ENSRNOT00000084700|Golt1b|ENSRNOG00000058386|golgi transport 1B [Source:RGD Symbol%3BAcc:1310691]
rn6_v1_chr1_+_226258417_226258417	0.00429603	Hoxd1	ENSRNOT00000081839|AABR07006258.2|ENSRNOG00000055023|
rn6_v1_chr6_+_2216623_2216623	0.00421013	Hoxd1	ENSRNOT00000008045|Rmdn2|ENSRNOG00000006082|regulator of microtubule dynamics 2 [Source:RGD Symbol%3BAcc:1559836]
rn6_v1_chr18_+_4084228_4084228	0.00323933	Hoxd1	ENSRNOT00000071392|Cabyr|ENSRNOG00000047436|calcium binding tyrosine phosphorylation regulated [Source:RGD Symbol%3BAcc:1585413]
rn6_v1_chr1_-_267463694_267463705	0.00256365	Hoxd1	ENSRNOT00000084851|Col17a1|ENSRNOG00000012110|collagen type XVII alpha 1 chain [Source:RGD Symbol%3BAcc:1311130]	ENSRNOT00000016645|Col17a1|ENSRNOG00000012110|collagen type XVII alpha 1 chain [Source:RGD Symbol%3BAcc:1311130]
rn6_v1_chr13_-_78885464_78885464	0.00217943	Hoxd1	ENSRNOT00000003828|Dars2|ENSRNOG00000002813|aspartyl-tRNA synthetase 2 (mitochondrial) [Source:RGD Symbol%3BAcc:1308286]
rn6_v1_chr3_-_45169118_45169118	0.00196908	Hoxd1	ENSRNOT00000086371|Ccdc148|ENSRNOG00000057740|coiled-coil domain containing 148 [Source:RGD Symbol%3BAcc:1561169]
rn6_v1_chr4_+_139670092_139670092	0.00196868	Hoxd1	ENSRNOT00000008879|Lrrn1|ENSRNOG00000006802|leucine rich repeat neuronal 1 [Source:RGD Symbol%3BAcc:1564145]
rn6_v1_chr3_-_153114520_153114520	0.00194636	Hoxd1	ENSRNOT00000008254|Dsn1|ENSRNOG00000006236|DSN1 homolog%2C MIS12 kinetochore complex component [Source:RGD Symbol%3BAcc:1565179]
rn6_v1_chr16_+_60307148_60307148	0.00183873	Hoxd1	ENSRNOT00000015239|Eri1|ENSRNOG00000011448|exoribonuclease 1 [Source:RGD Symbol%3BAcc:1308378]
rn6_v1_chr15_-_52214616_52214616	0.00131231	Hoxd1	ENSRNOT00000015035|Sftpc|ENSRNOG00000011177|surfactant protein C [Source:RGD Symbol%3BAcc:3666]
rn6_v1_chr14_-_2032593_2032593	0.00111593	Hoxd1	ENSRNOT00000000037|Fgfrl1|ENSRNOG00000024207|fibroblast growth factor receptor-like 1 [Source:RGD Symbol%3BAcc:735156]
rn6_v1_chr4_-_176909075_176909075	0.000786891	Hoxd1	ENSRNOT00000067489|Abcc9|ENSRNOG00000036960|ATP binding cassette subfamily C member 9 [Source:RGD Symbol%3BAcc:3787]
rn6_v1_chr6_+_101532518_101532518	0.000676617	Hoxd1	ENSRNOT00000075054|Gphn|ENSRNOG00000028366|gephyrin [Source:RGD Symbol%3BAcc:69194]
