rn6_v1_chr9_-_52238564_52238564	0.195018	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000005073|Col5a2|ENSRNOG00000003736|collagen type V alpha 2 chain [Source:RGD Symbol%3BAcc:70921]
rn6_v1_chr2_-_31753528_31753528	0.160757	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000075057|Pik3r1|ENSRNOG00000018903|phosphoinositide-3-kinase regulatory subunit 1 [Source:RGD Symbol%3BAcc:3329]
rn6_v1_chr19_-_22194740_22194740	0.137556	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000086187|Phkb|ENSRNOG00000024101|phosphorylase kinase regulatory subunit beta [Source:RGD Symbol%3BAcc:620186]
rn6_v1_chr6_+_146784915_146784915	0.120589	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000008362|Sp8|ENSRNOG00000005943|Sp8 transcription factor [Source:RGD Symbol%3BAcc:1307619]
rn6_v1_chr19_-_19315357_19315357	0.0986859	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000018888|Cyld|ENSRNOG00000014048|CYLD lysine 63 deubiquitinase [Source:RGD Symbol%3BAcc:1308346]
rn6_v1_chr14_+_12218553_12218553	0.0929123	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000003237|Prkg2|ENSRNOG00000002361|protein kinase%2C cGMP-dependent%2C type II [Source:RGD Symbol%3BAcc:3401]
rn6_v1_chr13_+_57243877_57243877	0.0832767	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000083693|Kcnt2|ENSRNOG00000013312|potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol%3BAcc:735074]
rn6_v1_chr2_+_143895982_143895982	0.0831259	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000080026|Supt20h|ENSRNOG00000059480|SPT20 homolog%2C SAGA complex component [Source:RGD Symbol%3BAcc:1307812]
rn6_v1_chr1_+_8310577_8310577	0.0683973	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000015131|Hivep2|ENSRNOG00000011015|human immunodeficiency virus type I enhancer binding protein 2 [Source:RGD Symbol%3BAcc:61988]
rn6_v1_chr15_-_48284548_48284548	0.0619535	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000038336|Hmbox1|ENSRNOG00000013326|homeobox containing 1 [Source:RGD Symbol%3BAcc:1306787]
rn6_v1_chr9_+_118586179_118586179	0.0587827	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000022351|Dlgap1|ENSRNOG00000016196|DLG associated protein 1 [Source:RGD Symbol%3BAcc:620223]
rn6_v1_chr13_+_90533365_90533365	0.0586869	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000082469|Dcaf8|ENSRNOG00000006785|DDB1 and CUL4 associated factor 8 [Source:RGD Symbol%3BAcc:1308513]
rn6_v1_chr3_-_105663457_105663457	0.0568036	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000067646|Zfp770|ENSRNOG00000043037|zinc finger protein 770 [Source:RGD Symbol%3BAcc:1597283]
rn6_v1_chr16_+_22361998_22361998	0.0547187	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000016193|Slc18a1|ENSRNOG00000011992|solute carrier family 18 member A1 [Source:RGD Symbol%3BAcc:3693]
rn6_v1_chr9_+_73529612_73529612	0.0534347	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000032430|Unc80|ENSRNOG00000028362|unc-80 homolog%2C NALCN activator [Source:RGD Symbol%3BAcc:1309976]
rn6_v1_chr15_-_43542939_43542939	0.051014	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000012996|Dpysl2|ENSRNOG00000009625|dihydropyrimidinase-like 2 [Source:RGD Symbol%3BAcc:2517]
rn6_v1_chr7_+_64769089_64769089	0.047687	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000088861|Grip1|ENSRNOG00000004013|glutamate receptor interacting protein 1 [Source:RGD Symbol%3BAcc:621667]
rn6_v1_chr2_-_96509424_96509424	0.0464766	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000090866|Zc2hc1a|ENSRNOG00000022356|zinc finger%2C C2HC-type containing 1A [Source:RGD Symbol%3BAcc:1311970]
rn6_v1_chr7_-_140437467_140437467	0.0459426	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000087181|Fkbp11|ENSRNOG00000054775|FK506 binding protein 11 [Source:RGD Symbol%3BAcc:1306161]
rn6_v1_chr5_-_154965027_154965171	0.0446657	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000080881|Kdm1a|ENSRNOG00000022372|lysine demethylase 1A [Source:RGD Symbol%3BAcc:1562975]	ENSRNOT00000055992|Kdm1a|ENSRNOG00000022372|lysine demethylase 1A [Source:RGD Symbol%3BAcc:1562975]
rn6_v1_chr11_-_45124423_45124423	0.0446304	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000046383|Filip1l|ENSRNOG00000001645|filamin A interacting protein 1-like [Source:RGD Symbol%3BAcc:1565927]
rn6_v1_chr6_-_91250138_91250138	0.0423672	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000052408|LOC100911256|ENSRNOG00000049104|ninein-like [Source:RGD Symbol%3BAcc:6493757]
rn6_v1_chr1_-_163554839_163554839	0.0410725	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000081509|Emsy|ENSRNOG00000015560|EMSY BRCA2-interacting transcriptional repressor [Source:RGD Symbol%3BAcc:1310712]
rn6_v1_chr4_-_155740193_155740193	0.0403205	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000043229|LOC102550396|ENSRNOG00000030870|LRRGT00188 [Source:RGD Symbol%3BAcc:7546468]
rn6_v1_chr2_-_231409988_231409988	0.0401761	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000080637|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]	ENSRNOT00000037255|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]	ENSRNOT00000074002|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]
rn6_v1_chr10_+_77537340_77537340	0.0386644	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000003297|Tmem100|ENSRNOG00000002434|transmembrane protein 100 [Source:RGD Symbol%3BAcc:1560541]
rn6_v1_chr2_-_173087648_173087648	0.0385686	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000091079|Iqcj|ENSRNOG00000060482|IQ motif containing J [Source:MGI Symbol%3BAcc:MGI:3644166]
rn6_v1_chr10_+_71546977_71546977	0.0385098	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000041140|Acaca|ENSRNOG00000034013|acetyl-CoA carboxylase alpha [Source:RGD Symbol%3BAcc:621248]
rn6_v1_chr7_+_122433099_122433099	0.0383465	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000055447|Tmsb10|ENSRNOG00000036921|thymosin%2C beta 10 [Source:RGD Symbol%3BAcc:62022]
rn6_v1_chr3_+_47677720_47677720	0.0370255	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000065340|Tbr1|ENSRNOG00000005049|T-box%2C brain%2C 1 [Source:RGD Symbol%3BAcc:1591773]
rn6_v1_chr5_+_167141875_167141875	0.0367032	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000089314|Slc2a5|ENSRNOG00000017693|solute carrier family 2 member 5 [Source:RGD Symbol%3BAcc:68328]
rn6_v1_chr4_-_108717309_108717309	0.0348884	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000085062|AABR07061178.1|ENSRNOG00000054121|
rn6_v1_chr4_+_5644260_5644260	0.0342092	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000041876|Actr3b|ENSRNOG00000031855|ARP3 actin related protein 3 homolog B [Source:RGD Symbol%3BAcc:1565759]
rn6_v1_chr14_-_3288017_3288017	0.0337332	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000080452|LOC689986|ENSRNOG00000047876|hypothetical protein LOC689986 [Source:RGD Symbol%3BAcc:1586315]
rn6_v1_chr17_-_51912496_51912496	0.0333888	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000019272|Inhba|ENSRNOG00000014320|inhibin beta A subunit [Source:RGD Symbol%3BAcc:62074]
rn6_v1_chr10_-_58771908_58771908	0.0332069	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000018808|RGD1304728|ENSRNOG00000014027|similar to 4933427D14Rik protein [Source:RGD Symbol%3BAcc:1304728]
rn6_v1_chr15_-_106678918_106678918	0.0321875	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000034723|Stk24|ENSRNOG00000011511|serine/threonine kinase 24 [Source:RGD Symbol%3BAcc:1561742]
rn6_v1_chr8_-_49158971_49158971	0.0302594	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000020573|Kmt2a|ENSRNOG00000015133|lysine methyltransferase 2A [Source:RGD Symbol%3BAcc:1586165]
rn6_v1_chr17_-_18590536_18590536	0.0293193	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000078992|Cap2|ENSRNOG00000043350|CAP%2C adenylate cyclase-associated protein%2C 2 (yeast) [Source:RGD Symbol%3BAcc:620310]
rn6_v1_chr2_+_22910236_22910236	0.0279838	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000078266|Homer1|ENSRNOG00000047014|homer scaffolding protein 1 [Source:RGD Symbol%3BAcc:628725]
rn6_v1_chr3_+_151126591_151126591	0.0275642	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000025859|Myh7b|ENSRNOG00000018997|myosin heavy chain 7B [Source:RGD Symbol%3BAcc:1307994]
rn6_v1_chr1_-_48891130_48891130	0.0273434	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000083884|AC135026.1|ENSRNOG00000054620|
rn6_v1_chrX_-_26376467_26376467	0.0272367	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000051655|Arhgap6|ENSRNOG00000003956|Rho GTPase activating protein 6 [Source:RGD Symbol%3BAcc:2323364]	ENSRNOT00000036502|Arhgap6|ENSRNOG00000003956|Rho GTPase activating protein 6 [Source:RGD Symbol%3BAcc:2323364]
rn6_v1_chr8_+_118066988_118066988	0.0268978	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000056161|Map4|ENSRNOG00000020748|microtubule-associated protein 4 [Source:RGD Symbol%3BAcc:1564359]
rn6_v1_chr15_-_55209342_55209342	0.026624	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000021752|Rb1|ENSRNOG00000016029|RB transcriptional corepressor 1 [Source:RGD Symbol%3BAcc:3540]
rn6_v1_chr2_-_231409496_231409496	0.0264225	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000055615|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]	ENSRNOT00000015386|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]	ENSRNOT00000068415|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]
rn6_v1_chr14_+_39663421_39663421	0.0261811	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000003197|Gabra2|ENSRNOG00000002349|gamma-aminobutyric acid type A receptor alpha2 subunit [Source:RGD Symbol%3BAcc:61856]
rn6_v1_chr9_-_119818310_119818310	0.0259111	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000019359|Smchd1|ENSRNOG00000014319|structural maintenance of chromosomes flexible hinge domain containing 1 [Source:RGD Symbol%3BAcc:1307234]
rn6_v1_chr7_-_118332577_118332577	0.0227069	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000090370|Rbfox2|ENSRNOG00000004688|RNA binding protein%2C fox-1 homolog 2 [Source:RGD Symbol%3BAcc:1311838]
rn6_v1_chr3_-_7796385_7796385	0.0222218	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000082489|Ntng2|ENSRNOG00000013694|netrin G2 [Source:RGD Symbol%3BAcc:1307089]
rn6_v1_chr1_-_200548317_200548317	0.0218992	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000088610|AABR07005806.1|ENSRNOG00000057653|
rn6_v1_chr10_-_88060561_88060561	0.0218601	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000019133|Krt19|ENSRNOG00000014233|keratin 19 [Source:RGD Symbol%3BAcc:619936]
rn6_v1_chr1_+_44311513_44311513	0.0217404	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000065386|Tiam2|ENSRNOG00000016728|T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol%3BAcc:2324148]
rn6_v1_chr3_+_54253949_54253949	0.0213988	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000010018|B3galt1|ENSRNOG00000007625|Beta-1%2C3-galactosyltransferase 1 [Source:RGD Symbol%3BAcc:1311898]
rn6_v1_chr7_+_34533543_34533584	0.0203054	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000007412|Ntn4|ENSRNOG00000005573|netrin 4 [Source:RGD Symbol%3BAcc:1565947]	ENSRNOT00000084185|Ntn4|ENSRNOG00000005573|netrin 4 [Source:RGD Symbol%3BAcc:1565947]
rn6_v1_chr7_-_52404774_52404774	0.0193571	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000082100|Nav3|ENSRNOG00000052157|neuron navigator 3 [Source:RGD Symbol%3BAcc:1306259]
rn6_v1_chrX_+_78042859_78042859	0.018761	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000003286|Lpar4|ENSRNOG00000002428|lysophosphatidic acid receptor 4 [Source:RGD Symbol%3BAcc:1563686]
rn6_v1_chr15_+_56666012_56666012	0.0186508	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000013408|Htr2a|ENSRNOG00000010063|5-hydroxytryptamine receptor 2A [Source:RGD Symbol%3BAcc:61800]
rn6_v1_chr2_+_206064179_206064179	0.0186184	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000025953|Syt6|ENSRNOG00000019163|synaptotagmin 6 [Source:RGD Symbol%3BAcc:62012]
rn6_v1_chr12_+_51960262_51960262	0.0185985	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000084214|Ep400|ENSRNOG00000037483|E1A binding protein p400 [Source:RGD Symbol%3BAcc:1304733]
rn6_v1_chr6_+_83421882_83421882	0.0185942	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000084258|Lrfn5|ENSRNOG00000005550|leucine rich repeat and fibronectin type III domain containing 5 [Source:RGD Symbol%3BAcc:1309357]
rn6_v1_chr7_+_130042947_130042947	0.0180856	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000089707|Panx2|ENSRNOG00000055530|pannexin 2 [Source:RGD Symbol%3BAcc:735191]
rn6_v1_chr8_-_63750531_63750531	0.0180725	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000009496|Neo1|ENSRNOG00000006490|neogenin 1 [Source:RGD Symbol%3BAcc:619837]
rn6_v1_chr3_+_48096954_48096954	0.0180719	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000068238|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]	ENSRNOT00000064344|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]	ENSRNOT00000044638|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]
rn6_v1_chr7_-_122329443_122329443	0.0176754	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000032232|Mkl1|ENSRNOG00000018803|megakaryoblastic leukemia (translocation) 1 [Source:RGD Symbol%3BAcc:1304873]
rn6_v1_chrX_-_10031167_10031167	0.0172518	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000060988|Gpr34|ENSRNOG00000039759|G protein-coupled receptor 34 [Source:RGD Symbol%3BAcc:1563681]
rn6_v1_chr6_+_107603580_107603580	0.0170103	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000036430|Dnal1|ENSRNOG00000042333|dynein%2C axonemal%2C light chain 1 [Source:RGD Symbol%3BAcc:1591349]
rn6_v1_chr7_+_142575672_142575677	0.0169531	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000080923|Scn8a|ENSRNOG00000005309|sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol%3BAcc:3638]	ENSRNOT00000008160|Scn8a|ENSRNOG00000005309|sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol%3BAcc:3638]
rn6_v1_chr5_-_50221095_50221095	0.0167934	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000012164|RGD1563056|ENSRNOG00000009178|similar to hypothetical protein [Source:RGD Symbol%3BAcc:1563056]
rn6_v1_chr4_-_178441547_178441547	0.0163927	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000087434|Sox5|ENSRNOG00000027869|SRY box 5 [Source:RGD Symbol%3BAcc:620471]	ENSRNOT00000055542|Sox5|ENSRNOG00000027869|SRY box 5 [Source:RGD Symbol%3BAcc:620471]
rn6_v1_chr3_+_43255567_43255567	0.0161159	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000044419|Gpd2|ENSRNOG00000033824|glycerol-3-phosphate dehydrogenase 2 [Source:RGD Symbol%3BAcc:2726]
rn6_v1_chr10_-_37311625_37311625	0.015442	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000043343|Jade2|ENSRNOG00000004956|jade family PHD finger 2 [Source:RGD Symbol%3BAcc:1309152]
rn6_v1_chr5_+_25725683_25725683	0.0153352	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000087602|LOC679087|ENSRNOG00000055292|similar to swan [Source:RGD Symbol%3BAcc:1593040]
rn6_v1_chr6_-_8344574_8344574	0.0153128	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000009660|Prepl|ENSRNOG00000007326|prolyl endopeptidase-like [Source:RGD Symbol%3BAcc:1310143]
rn6_v1_chr6_+_25076147_25076147	0.0151212	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000010419|Ehd3|ENSRNOG00000007744|EH-domain containing 3 [Source:RGD Symbol%3BAcc:621762]
rn6_v1_chr16_-_32421005_32421005	0.0149711	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000082712|Nek1|ENSRNOG00000010418|NIMA-related kinase 1 [Source:RGD Symbol%3BAcc:1309375]
rn6_v1_chr13_-_37697569_37697569	0.01455	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000045263|LOC680288|ENSRNOG00000029868|similar to NADH-ubiquinone oxidoreductase B9 subunit (Complex I-B9) (CI-B9) [Source:RGD Symbol%3BAcc:1594144]
rn6_v1_chr13_-_72744295_72744303	0.0144506	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000093366|Ier5|ENSRNOG00000059406|immediate early response 5 [Source:RGD Symbol%3BAcc:69252]	ENSRNOT00000077157|Ier5|ENSRNOG00000059406|immediate early response 5 [Source:RGD Symbol%3BAcc:69252]
rn6_v1_chr13_+_77485113_77485113	0.014106	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000080254|Tnr|ENSRNOG00000002468|tenascin R [Source:RGD Symbol%3BAcc:3886]
rn6_v1_chr3_-_7795758_7795758	0.0137179	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000045919|Ntng2|ENSRNOG00000013694|netrin G2 [Source:RGD Symbol%3BAcc:1307089]
rn6_v1_chr4_+_158243086_158243086	0.0132703	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000032112|Ano2|ENSRNOG00000023561|anoctamin 2 [Source:RGD Symbol%3BAcc:1591606]
rn6_v1_chr5_+_25253010_25253010	0.0132347	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000061333|Rbm12b|ENSRNOG00000016330|RNA binding motif protein 12B [Source:RGD Symbol%3BAcc:1307658]
rn6_v1_chrX_+_71528988_71528988	0.0124365	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000075963|Ogt|ENSRNOG00000003359|O-linked N-acetylglucosamine (GlcNAc) transferase [Source:RGD Symbol%3BAcc:62060]
rn6_v1_chr7_-_2961873_2961873	0.0124134	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000067441|Rps15-ps2|ENSRNOG00000043026|ribosomal protein S15%2C pseudogene 2 [Source:RGD Symbol%3BAcc:1587266]
rn6_v1_chr8_+_82037977_82037977	0.0123269	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000082288|Myo5a|ENSRNOG00000058866|myosin VA [Source:RGD Symbol%3BAcc:3143]
rn6_v1_chr11_-_46369577_46369577	0.0120032	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000049859|Abi3bp|ENSRNOG00000001627|ABI family member 3 binding protein [Source:RGD Symbol%3BAcc:1562717]	ENSRNOT00000047817|Abi3bp|ENSRNOG00000001627|ABI family member 3 binding protein [Source:RGD Symbol%3BAcc:1562717]	ENSRNOT00000002220|Abi3bp|ENSRNOG00000001627|ABI family member 3 binding protein [Source:RGD Symbol%3BAcc:1562717]	ENSRNOT00000002223|Abi3bp|ENSRNOG00000001627|ABI family member 3 binding protein [Source:RGD Symbol%3BAcc:1562717]	ENSRNOT00000063864|Abi3bp|ENSRNOG00000001627|ABI family member 3 binding protein [Source:RGD Symbol%3BAcc:1562717]	ENSRNOT00000070871|Abi3bp|ENSRNOG00000001627|ABI family member 3 binding protein [Source:RGD Symbol%3BAcc:1562717]	ENSRNOT00000072140|Abi3bp|ENSRNOG00000001627|ABI family member 3 binding protein [Source:RGD Symbol%3BAcc:1562717]
rn6_v1_chr9_+_16737642_16737642	0.011944	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000061430|Srf|ENSRNOG00000018232|serum response factor [Source:RGD Symbol%3BAcc:1559787]
rn6_v1_chr6_-_42002819_42002819	0.0119393	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000032417|Greb1|ENSRNOG00000024651|growth regulation by estrogen in breast cancer 1 [Source:RGD Symbol%3BAcc:1564091]
rn6_v1_chr10_-_87248572_87248632	0.0118428	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000066637|Krt26|ENSRNOG00000033617|keratin 26 [Source:RGD Symbol%3BAcc:1303322]	ENSRNOT00000085677|Krt26|ENSRNOG00000033617|keratin 26 [Source:RGD Symbol%3BAcc:1303322]
rn6_v1_chr7_-_59547174_59547174	0.0113609	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000085836|Cnot2|ENSRNOG00000004909|CCR4-NOT transcription complex%2C subunit 2 [Source:RGD Symbol%3BAcc:1311672]
rn6_v1_chr19_+_9895121_9895121	0.011265	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000033953|Prss54|ENSRNOG00000023092|protease%2C serine%2C 54 [Source:RGD Symbol%3BAcc:1307877]
rn6_v1_chr5_-_6186329_6186329	0.0109289	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000012610|Sulf1|ENSRNOG00000009037|sulfatase 1 [Source:RGD Symbol%3BAcc:708554]
rn6_v1_chr3_-_121882726_121882726	0.010825	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000006308|Il1b|ENSRNOG00000004649|interleukin 1 beta [Source:RGD Symbol%3BAcc:2891]
rn6_v1_chr8_+_103938520_103938520	0.0108098	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000067835|Gk5|ENSRNOG00000010942|glycerol kinase 5 (putative) [Source:RGD Symbol%3BAcc:1311223]
rn6_v1_chr1_+_198682230_198682230	0.0106072	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000023995|Znf48|ENSRNOG00000017837|zinc finger protein 48 [Source:RGD Symbol%3BAcc:9115869]
rn6_v1_chr1_+_282134981_282134981	0.0103164	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000036203|Nanos1|ENSRNOG00000025060|nanos C2HC-type zinc finger 1 [Source:RGD Symbol%3BAcc:1308194]
rn6_v1_chr4_+_6559545_6559545	0.0103102	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000067183|Prkag2|ENSRNOG00000009085|protein kinase AMP-activated non-catalytic subunit gamma 2 [Source:RGD Symbol%3BAcc:727782]
rn6_v1_chr2_+_41467064_41467064	0.0101847	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000073231|AABR07008066.2|ENSRNOG00000047236|
rn6_v1_chr7_-_134722215_134722215	0.0101206	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000036750|Prickle1|ENSRNOG00000022772|prickle planar cell polarity protein 1 [Source:RGD Symbol%3BAcc:735090]
rn6_v1_chr5_+_71742911_71742911	0.0100684	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000047225|Zfp462|ENSRNOG00000032048|zinc finger protein 462 [Source:RGD Symbol%3BAcc:1562123]
rn6_v1_chr7_+_80750725_80750725	0.00967165	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000079962|Oxr1|ENSRNOG00000056487|oxidation resistance 1 [Source:RGD Symbol%3BAcc:621857]
rn6_v1_chr3_-_60166013_60166013	0.00955352	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000024922|Wipf1|ENSRNOG00000018406|WAS/WASL interacting protein family%2C member 1 [Source:RGD Symbol%3BAcc:620887]
rn6_v1_chr3_+_113918629_113918651	0.00933454	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000078978|Ctdspl2|ENSRNOG00000022141|CTD small phosphatase like 2 [Source:RGD Symbol%3BAcc:1309219]	ENSRNOT00000037168|Ctdspl2|ENSRNOG00000022141|CTD small phosphatase like 2 [Source:RGD Symbol%3BAcc:1309219]
rn6_v1_chr7_+_64768742_64768742	0.00931404	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000005545|Grip1|ENSRNOG00000004013|glutamate receptor interacting protein 1 [Source:RGD Symbol%3BAcc:621667]
rn6_v1_chr9_+_92681078_92681078	0.00887164	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000034152|Sp100|ENSRNOG00000022769|SP100 nuclear antigen [Source:RGD Symbol%3BAcc:1359550]
rn6_v1_chr8_-_22086095_22086095	0.00847664	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000068598|Zglp1|ENSRNOG00000042601|zinc finger%2C GATA-like protein 1 [Source:RGD Symbol%3BAcc:2322460]
rn6_v1_chr10_-_16731898_16731898	0.00831178	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000028186|Crebrf|ENSRNOG00000020769|CREB3 regulatory factor [Source:RGD Symbol%3BAcc:1310862]
rn6_v1_chr3_+_9366053_9366053	0.00807082	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000073999|Fibcd1l1|ENSRNOG00000050844|fibrinogen C domain containing 1-like 1 [Source:RGD Symbol%3BAcc:9301596]
rn6_v1_chr3_+_154910626_154910626	0.00804633	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000079515|Ralgapb|ENSRNOG00000014836|Ral GTPase activating protein non-catalytic beta subunit [Source:RGD Symbol%3BAcc:1306861]
rn6_v1_chr6_-_26680284_26680284	0.00803277	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000039709|Cad|ENSRNOG00000026474|carbamoyl-phosphate synthetase 2%2C aspartate transcarbamylase%2C and dihydroorotase [Source:RGD Symbol%3BAcc:1588606]
rn6_v1_chr2_+_8732932_8732932	0.00796213	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000072849|Arrdc3|ENSRNOG00000045649|arrestin domain containing 3 [Source:RGD Symbol%3BAcc:1359478]
rn6_v1_chr10_+_45322248_45322248	0.0079005	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000047268|Trim11|ENSRNOG00000002915|tripartite motif-containing 11 [Source:RGD Symbol%3BAcc:1305448]
rn6_v1_chr9_+_100489852_100489852	0.00776537	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000022854|Ppp1r7|ENSRNOG00000016974|protein phosphatase 1%2C regulatory subunit 7 [Source:RGD Symbol%3BAcc:1308169]
rn6_v1_chr9_+_66888393_66888393	0.00765743	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000023536|Carf|ENSRNOG00000017491|calcium responsive transcription factor [Source:RGD Symbol%3BAcc:1306822]
rn6_v1_chr2_-_120316357_120316357	0.0075348	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000065469|Ccdc39|ENSRNOG00000011440|coiled-coil domain containing 39 [Source:RGD Symbol%3BAcc:1306277]
rn6_v1_chr15_-_34693034_34693034	0.0075157	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000083314|Mcpt8|ENSRNOG00000049991|mast cell protease 8 [Source:RGD Symbol%3BAcc:3067]
rn6_v1_chr6_+_73358112_73358112	0.0073881	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000041373|Arhgap5|ENSRNOG00000004696|Rho GTPase activating protein 5 [Source:RGD Symbol%3BAcc:1308507]
rn6_v1_chr18_+_17403407_17403407	0.00732625	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000045150|RGD1562608|ENSRNOG00000029466|similar to KIAA1328 protein [Source:RGD Symbol%3BAcc:1562608]
rn6_v1_chr5_+_128083118_128083118	0.00724255	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000079161|Zcchc11|ENSRNOG00000052062|zinc finger CCHC-type containing 11 [Source:RGD Symbol%3BAcc:1310138]
rn6_v1_chr5_+_64566804_64566804	0.00712648	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000073192|LOC103690035|ENSRNOG00000050760|TGF-beta receptor type-1-like [Source:RGD Symbol%3BAcc:9435399]
rn6_v1_chr10_-_109802739_109802739	0.00706318	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000054951|Sirt7|ENSRNOG00000036683|sirtuin 7 [Source:RGD Symbol%3BAcc:1305876]
rn6_v1_chr1_+_167522895_167522895	0.00701117	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000092987|Stim1|ENSRNOG00000020425|stromal interaction molecule 1 [Source:RGD Symbol%3BAcc:1306831]
rn6_v1_chr12_-_11175917_11175917	0.00699559	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000079573|Zkscan5|ENSRNOG00000059552|zinc finger with KRAB and SCAN domains 5 [Source:RGD Symbol%3BAcc:1311175]
rn6_v1_chr1_+_266844480_266844480	0.00695548	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000027482|Taf5|ENSRNOG00000020274|TATA-box binding protein associated factor 5 [Source:RGD Symbol%3BAcc:1311332]
rn6_v1_chrX_+_65040775_65040775	0.00669835	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000081354|Zc3h12b|ENSRNOG00000011508|zinc finger CCCH-type containing 12B [Source:RGD Symbol%3BAcc:1560891]
rn6_v1_chrX_+_33884499_33884499	0.00654178	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000090041|Reps2|ENSRNOG00000061508|RALBP1 associated Eps domain containing protein 2 [Source:MGI Symbol%3BAcc:MGI:2663511]
rn6_v1_chr9_-_11027506_11027506	0.0065054	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000071107|Chaf1a|ENSRNOG00000046479|chromatin assembly factor 1 subunit A [Source:RGD Symbol%3BAcc:1590865]
rn6_v1_chr1_+_64928503_64928503	0.0064032	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000086274|Vom2r80|ENSRNOG00000055298|vomeronasal 2 receptor%2C 80 [Source:RGD Symbol%3BAcc:1559687]
rn6_v1_chr4_-_173640684_173640684	0.00606565	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000010728|Rergl|ENSRNOG00000008130|RERG like [Source:RGD Symbol%3BAcc:1560090]
rn6_v1_chr1_+_42169501_42169501	0.0058468	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000025477|Vip|ENSRNOG00000018808|vasoactive intestinal peptide [Source:RGD Symbol%3BAcc:621647]	ENSRNOT00000092791|Vip|ENSRNOG00000018808|vasoactive intestinal peptide [Source:RGD Symbol%3BAcc:621647]
rn6_v1_chr1_-_126211439_126211439	0.00576561	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000014988|Tjp1|ENSRNOG00000011077|tight junction protein 1 [Source:RGD Symbol%3BAcc:1306305]
rn6_v1_chr15_-_100303807_100303807	0.00569769	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000041344|LOC102548369|ENSRNOG00000031960|40S ribosomal protein S16-like [Source:RGD Symbol%3BAcc:7517571]
rn6_v1_chr14_-_20920286_20920286	0.00555895	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000004391|Slc4a4|ENSRNOG00000003134|solute carrier family 4 member 4 [Source:RGD Symbol%3BAcc:68936]
rn6_v1_chr7_+_66742987_66742987	0.00546108	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000045130|Mon2|ENSRNOG00000004185|MON2 homolog%2C regulator of endosome-to-Golgi trafficking [Source:RGD Symbol%3BAcc:1308808]
rn6_v1_chr8_-_52828134_52828134	0.00526655	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000007736|Rbm7|ENSRNOG00000005710|RNA binding motif protein 7 [Source:RGD Symbol%3BAcc:1308017]
rn6_v1_chr15_+_4240203_4240203	0.00521619	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000010178|Mss51|ENSRNOG00000007632|MSS51 mitochondrial translational activator [Source:RGD Symbol%3BAcc:1309408]
rn6_v1_chr6_+_8218696_8218696	0.00508029	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000083470|Ppm1b|ENSRNOG00000030667|protein phosphatase%2C Mg2+/Mn2+ dependent%2C 1B [Source:RGD Symbol%3BAcc:3374]
rn6_v1_chr7_+_140829076_140829076	0.00503418	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000086179|Spats2|ENSRNOG00000052307|spermatogenesis associated%2C serine-rich 2 [Source:RGD Symbol%3BAcc:1304780]
rn6_v1_chr5_+_167142182_167142182	0.00489589	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000024054|Slc2a5|ENSRNOG00000017693|solute carrier family 2 member 5 [Source:RGD Symbol%3BAcc:68328]
rn6_v1_chr13_-_94289333_94289333	0.00477567	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000078195|Pld5|ENSRNOG00000003997|phospholipase D family%2C member 5 [Source:RGD Symbol%3BAcc:1562609]
rn6_v1_chr3_-_14643897_14643904	0.00468504	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000082008|Ggta1|ENSRNOG00000019179|glycoprotein%2C alpha-galactosyltransferase 1 [Source:RGD Symbol%3BAcc:629476]	ENSRNOT00000025983|Ggta1|ENSRNOG00000019179|glycoprotein%2C alpha-galactosyltransferase 1 [Source:RGD Symbol%3BAcc:629476]
rn6_v1_chr17_-_43770561_43770561	0.00459485	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000088408|RGD1562378|ENSRNOG00000051891|histone H4 variant H4-v.1 [Source:RGD Symbol%3BAcc:1562378]
rn6_v1_chr4_+_158088505_158088505	0.00456068	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000026643|Vwf|ENSRNOG00000019689|von Willebrand factor [Source:RGD Symbol%3BAcc:621759]
rn6_v1_chr9_-_7891514_7891514	0.00452681	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000072684|Pot1b|ENSRNOG00000047439|protection of telomeres 1B [Source:RGD Symbol%3BAcc:1582873]
rn6_v1_chr2_+_188745503_188745503	0.00444306	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000056652|Shc1|ENSRNOG00000020657|SHC adaptor protein 1 [Source:RGD Symbol%3BAcc:620446]
rn6_v1_chr2_-_35104963_35104963	0.00442414	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000018058|Rgs7bp|ENSRNOG00000013389|regulator of G-protein signaling 7-binding protein  [Source:RefSeq peptide%3BAcc:NP_001012347]
rn6_v1_chr4_+_127164453_127164453	0.0043008	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000017889|Kbtbd8|ENSRNOG00000013390|kelch repeat and BTB domain containing 8 [Source:RGD Symbol%3BAcc:1563166]
rn6_v1_chr4_-_6978073_6978073	0.00414649	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000045311|Nub1|ENSRNOG00000009282|negative regulator of ubiquitin-like proteins 1 [Source:RGD Symbol%3BAcc:1359489]
rn6_v1_chr1_+_277355619_277355619	0.00405974	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000022788|Nhlrc2|ENSRNOG00000016948|NHL repeat containing 2 [Source:RGD Symbol%3BAcc:1307348]
rn6_v1_chrX_+_104734082_104734082	0.00402921	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000005020|Srpx2|ENSRNOG00000003715|sushi-repeat-containing protein%2C X-linked 2 [Source:RGD Symbol%3BAcc:1562444]
rn6_v1_chr7_+_58814805_58814805	0.00395698	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000005909|Tspan8|ENSRNOG00000004411|tetraspanin 8 [Source:RGD Symbol%3BAcc:621783]
rn6_v1_chr15_-_93748742_93748742	0.00377403	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000093370|Mycbp2|ENSRNOG00000010479|MYC binding protein 2%2C E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:1312048]
rn6_v1_chr4_-_157486844_157486914	0.00375294	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000038281|Cops7a|ENSRNOG00000016778|COP9 signalosome subunit 7A [Source:RGD Symbol%3BAcc:1310070]	ENSRNOT00000022874|Cops7a|ENSRNOG00000016778|COP9 signalosome subunit 7A [Source:RGD Symbol%3BAcc:1310070]
rn6_v1_chr2_-_188745144_188745144	0.00371328	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000055533|Cks1b|ENSRNOG00000042561|CDC28 protein kinase regulatory subunit 1B [Source:RGD Symbol%3BAcc:1561797]
rn6_v1_chr10_-_107386072_107386072	0.00344822	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000004290|Timp2|ENSRNOG00000003148|TIMP metallopeptidase inhibitor 2 [Source:RGD Symbol%3BAcc:61312]
rn6_v1_chr7_+_132378273_132378273	0.00322805	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000010990|LOC690142|ENSRNOG00000025898|hypothetical protein LOC690142 [Source:RGD Symbol%3BAcc:1584027]
rn6_v1_chr2_+_54466280_54466280	0.00320468	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000033112|C6|ENSRNOG00000024115|complement C6 [Source:RGD Symbol%3BAcc:2238]
rn6_v1_chr6_+_52459946_52459962	0.00314608	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000073277|Atxn7l1|ENSRNOG00000010415|ataxin 7-like 1 [Source:RGD Symbol%3BAcc:1305730]	ENSRNOT00000013474|Atxn7l1|ENSRNOG00000010415|ataxin 7-like 1 [Source:RGD Symbol%3BAcc:1305730]
rn6_v1_chr18_+_29999290_29999290	0.00278105	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000027372|Pcdha4|ENSRNOG00000020119|protocadherin alpha 4 [Source:RGD Symbol%3BAcc:620337]
rn6_v1_chr14_-_115391652_115391652	0.00270302	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000002094|Chac2|ENSRNOG00000001531|ChaC cation transport regulator 2 [Source:RGD Symbol%3BAcc:1309120]
rn6_v1_chr6_+_37144787_37144787	0.00250139	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000075503|Rad51ap2|ENSRNOG00000049271|RAD51 associated protein 2 [Source:RGD Symbol%3BAcc:2322652]
rn6_v1_chr2_+_200572502_200572502	0.00241585	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000074666|Zfp697|ENSRNOG00000048181|zinc finger protein 697 [Source:RGD Symbol%3BAcc:1308711]
rn6_v1_chr3_+_154905141_154905149	0.00238378	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000088748|Ralgapb|ENSRNOG00000014836|Ral GTPase activating protein non-catalytic beta subunit [Source:RGD Symbol%3BAcc:1306861]	ENSRNOT00000020556|Ralgapb|ENSRNOG00000014836|Ral GTPase activating protein non-catalytic beta subunit [Source:RGD Symbol%3BAcc:1306861]
rn6_v1_chrX_+_106306795_106306795	0.00219744	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000073661|Gprasp1|ENSRNOG00000049985|G protein-coupled receptor associated sorting protein 1 [Source:RGD Symbol%3BAcc:621343]
rn6_v1_chr2_-_79078258_79078258	0.00208567	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000031170|Fbxl7|ENSRNOG00000024433|F-box and leucine-rich repeat protein 7 [Source:RGD Symbol%3BAcc:1305813]
rn6_v1_chr1_-_198652674_198652674	0.00208509	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000023706|Tbc1d10b|ENSRNOG00000017349|TBC1 domain family%2C member 10b [Source:RGD Symbol%3BAcc:1309191]
rn6_v1_chr2_-_140334912_140334912	0.00206909	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000015067|Elf2|ENSRNOG00000010815|E74-like factor 2 [Source:RGD Symbol%3BAcc:1310585]
rn6_v1_chr9_+_52023295_52023295	0.00193898	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000004956|Col3a1|ENSRNOG00000003357|collagen type III alpha 1 chain [Source:RGD Symbol%3BAcc:71029]
rn6_v1_chr12_-_40590361_40590361	0.00191608	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000067503|Tmem116|ENSRNOG00000027480|transmembrane protein 116 [Source:RGD Symbol%3BAcc:1596066]
rn6_v1_chr17_+_2690062_2690062	0.00191101	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000024937|Olr1653|ENSRNOG00000018489|olfactory receptor 1653 [Source:RGD Symbol%3BAcc:1334058]
rn6_v1_chr15_-_39705208_39705208	0.00189973	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000015412|Phf11|ENSRNOG00000053915|PHD finger protein 11 [Source:RGD Symbol%3BAcc:1310853]
rn6_v1_chr16_+_50152008_50152008	0.00176691	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000019237|Klkb1|ENSRNOG00000014118|kallikrein B1 [Source:RGD Symbol%3BAcc:67382]
rn6_v1_chr6_-_26314844_26314844	0.00171096	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000006658|Zfp512|ENSRNOG00000039815|zinc finger protein 512 [Source:RGD Symbol%3BAcc:1561526]
rn6_v1_chr4_+_56981283_56981283	0.00155818	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000010989|Tspan33|ENSRNOG00000007900|tetraspanin 33 [Source:RGD Symbol%3BAcc:1560915]
rn6_v1_chr2_+_206064394_206064394	0.00141202	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000077739|Syt6|ENSRNOG00000019163|synaptotagmin 6 [Source:RGD Symbol%3BAcc:62012]
rn6_v1_chr11_-_4397361_4397361	0.00135361	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000046370|Cadm2|ENSRNOG00000030840|cell adhesion molecule 2 [Source:RGD Symbol%3BAcc:1305678]
rn6_v1_chr8_+_1459526_1459526	0.00108326	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000034503|Kbtbd3|ENSRNOG00000022252|kelch repeat and BTB domain containing 3 [Source:RGD Symbol%3BAcc:1310895]
rn6_v1_chr8_+_106816152_106816152	0.00102978	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000047613|Faim|ENSRNOG00000030069|Fas apoptotic inhibitory molecule [Source:RGD Symbol%3BAcc:620572]
rn6_v1_chr3_+_44025300_44025300	0.00101631	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000006319|Galnt5|ENSRNOG00000004645|polypeptide N-acetylgalactosaminyltransferase 5 [Source:RGD Symbol%3BAcc:620361]
rn6_v1_chr12_+_13715843_13715843	0.000899572	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000042459|Actb|ENSRNOG00000034254|actin%2C beta [Source:RGD Symbol%3BAcc:628837]
rn6_v1_chr10_-_84920886_84920886	0.000741191	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000068083|Sp2|ENSRNOG00000010492|Sp2 transcription factor [Source:RGD Symbol%3BAcc:1592078]
rn6_v1_chr8_-_60570058_60570058	0.000673017	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000009169|Scaper|ENSRNOG00000006864|S-phase cyclin A-associated protein in the ER [Source:RGD Symbol%3BAcc:621585]
rn6_v1_chr10_-_70337532_70337532	0.000622431	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000055963|Slfn13|ENSRNOG00000021412|schlafen family member 13 [Source:RGD Symbol%3BAcc:1359139]
rn6_v1_chr4_+_182483194_182483194	0.00059202	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000002528|Far2|ENSRNOG00000001851|fatty acyl CoA reductase 2 [Source:RGD Symbol%3BAcc:1565966]
rn6_v1_chr2_+_52431601_52431601	0.000552864	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000023554|Hmgcs1|ENSRNOG00000016552|3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:RGD Symbol%3BAcc:70970]
rn6_v1_chr14_-_66978499_66978499	0.000509474	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000081601|Slit2|ENSRNOG00000003840|slit guidance ligand 2 [Source:RGD Symbol%3BAcc:69310]
rn6_v1_chr3_+_67538289_67538289	0.000335337	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000009839|Dnajc10|ENSRNOG00000006803|DnaJ heat shock protein family (Hsp40) member C10 [Source:RGD Symbol%3BAcc:1307813]
rn6_v1_chr14_-_21553949_21553949	0.000260468	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000031642|Smr3b|ENSRNOG00000001942|submaxillary gland androgen regulated protein 3B [Source:RGD Symbol%3BAcc:3953]
rn6_v1_chr17_+_78876111_78876111	0.000184334	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000057895|Rpl34-ps1|ENSRNOG00000038045|ribosomal protein L34%2C pseudogene 1 [Source:RGD Symbol%3BAcc:1595454]
rn6_v1_chr9_+_81689802_81689802	0.000154955	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000021432|Vil1|ENSRNOG00000015408|villin 1 [Source:RGD Symbol%3BAcc:1307048]
rn6_v1_chr2_-_250805445_250805445	0.000127665	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000055362|Clca4l|ENSRNOG00000036877|chloride channel calcium activated 4-like [Source:RGD Symbol%3BAcc:1591945]
rn6_v1_chr8_+_130581062_130581062	3.48384e-05	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000014323|Fam198a|ENSRNOG00000025676|family with sequence similarity 198%2C member A [Source:RGD Symbol%3BAcc:1305157]
