rn6_v1_chr6_+_146784915_146784915	0.123061	Hoxd12	ENSRNOT00000008362|Sp8|ENSRNOG00000005943|Sp8 transcription factor [Source:RGD Symbol%3BAcc:1307619]
rn6_v1_chr3_+_59981959_59981959	0.109167	Hoxd12	ENSRNOT00000030460|Sp9|ENSRNOG00000028187|Sp9 transcription factor [Source:RGD Symbol%3BAcc:1559457]
rn6_v1_chr2_-_173087648_173087648	0.06824	Hoxd12	ENSRNOT00000091079|Iqcj|ENSRNOG00000060482|IQ motif containing J [Source:MGI Symbol%3BAcc:MGI:3644166]
rn6_v1_chr10_+_77537340_77537340	0.0651089	Hoxd12	ENSRNOT00000003297|Tmem100|ENSRNOG00000002434|transmembrane protein 100 [Source:RGD Symbol%3BAcc:1560541]
rn6_v1_chr2_-_31753528_31753528	0.0626329	Hoxd12	ENSRNOT00000075057|Pik3r1|ENSRNOG00000018903|phosphoinositide-3-kinase regulatory subunit 1 [Source:RGD Symbol%3BAcc:3329]
rn6_v1_chr1_+_282134981_282134981	0.0565258	Hoxd12	ENSRNOT00000036203|Nanos1|ENSRNOG00000025060|nanos C2HC-type zinc finger 1 [Source:RGD Symbol%3BAcc:1308194]
rn6_v1_chr9_-_52238564_52238564	0.0531614	Hoxd12	ENSRNOT00000005073|Col5a2|ENSRNOG00000003736|collagen type V alpha 2 chain [Source:RGD Symbol%3BAcc:70921]
rn6_v1_chr19_-_19315357_19315357	0.0491079	Hoxd12	ENSRNOT00000018888|Cyld|ENSRNOG00000014048|CYLD lysine 63 deubiquitinase [Source:RGD Symbol%3BAcc:1308346]
rn6_v1_chr13_+_57243877_57243877	0.0481266	Hoxd12	ENSRNOT00000083693|Kcnt2|ENSRNOG00000013312|potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol%3BAcc:735074]
rn6_v1_chr7_+_28654733_28654733	0.0413856	Hoxd12	ENSRNOT00000006174|Pmch|ENSRNOG00000004632|pro-melanin-concentrating hormone [Source:RGD Symbol%3BAcc:3358]
rn6_v1_chr9_+_19451630_19451630	0.040644	Hoxd12	ENSRNOT00000065048|Enpp4|ENSRNOG00000010174|ectonucleotide pyrophosphatase/phosphodiesterase 4 [Source:RGD Symbol%3BAcc:1308689]
rn6_v1_chr15_-_43542939_43542939	0.0389846	Hoxd12	ENSRNOT00000012996|Dpysl2|ENSRNOG00000009625|dihydropyrimidinase-like 2 [Source:RGD Symbol%3BAcc:2517]
rn6_v1_chr13_+_90533365_90533365	0.0370389	Hoxd12	ENSRNOT00000082469|Dcaf8|ENSRNOG00000006785|DDB1 and CUL4 associated factor 8 [Source:RGD Symbol%3BAcc:1308513]
rn6_v1_chr14_+_12218553_12218553	0.0286371	Hoxd12	ENSRNOT00000003237|Prkg2|ENSRNOG00000002361|protein kinase%2C cGMP-dependent%2C type II [Source:RGD Symbol%3BAcc:3401]
rn6_v1_chr2_+_8732932_8732932	0.0284385	Hoxd12	ENSRNOT00000072849|Arrdc3|ENSRNOG00000045649|arrestin domain containing 3 [Source:RGD Symbol%3BAcc:1359478]
rn6_v1_chr6_+_83421882_83421882	0.028344	Hoxd12	ENSRNOT00000084258|Lrfn5|ENSRNOG00000005550|leucine rich repeat and fibronectin type III domain containing 5 [Source:RGD Symbol%3BAcc:1309357]
rn6_v1_chr13_+_44615553_44615553	0.0275878	Hoxd12	ENSRNOT00000082439|Rab3gap1|ENSRNOG00000003953|RAB3 GTPase activating protein catalytic subunit 1 [Source:RGD Symbol%3BAcc:1306487]	ENSRNOT00000005289|Rab3gap1|ENSRNOG00000003953|RAB3 GTPase activating protein catalytic subunit 1 [Source:RGD Symbol%3BAcc:1306487]
rn6_v1_chr18_+_30880020_30880020	0.0258139	Hoxd12	ENSRNOT00000060468|Pcdhgb5|ENSRNOG00000039457|protocadherin gamma subfamily B%2C 5 [Source:RGD Symbol%3BAcc:1591752]
rn6_v1_chr19_-_22194740_22194740	0.0256126	Hoxd12	ENSRNOT00000086187|Phkb|ENSRNOG00000024101|phosphorylase kinase regulatory subunit beta [Source:RGD Symbol%3BAcc:620186]
rn6_v1_chr8_-_84632817_84632817	0.0241507	Hoxd12	ENSRNOT00000076942|Mlip|ENSRNOG00000005934|muscular LMNA-interacting protein [Source:RGD Symbol%3BAcc:1590513]
rn6_v1_chr3_+_14889510_14889510	0.0235065	Hoxd12	ENSRNOT00000080760|Dab2ip|ENSRNOG00000055226|DAB2 interacting protein [Source:RGD Symbol%3BAcc:621686]
rn6_v1_chr20_+_5049496_5049505	0.0233522	Hoxd12	ENSRNOT00000088251|Ddah2|ENSRNOG00000000842|dimethylarginine dimethylaminohydrolase 2 [Source:RGD Symbol%3BAcc:1302955]	ENSRNOT00000001118|Ddah2|ENSRNOG00000000842|dimethylarginine dimethylaminohydrolase 2 [Source:RGD Symbol%3BAcc:1302955]
rn6_v1_chr9_+_73529612_73529612	0.0233291	Hoxd12	ENSRNOT00000032430|Unc80|ENSRNOG00000028362|unc-80 homolog%2C NALCN activator [Source:RGD Symbol%3BAcc:1309976]
rn6_v1_chr1_-_222242644_222242644	0.0228258	Hoxd12	ENSRNOT00000050891|Vegfb|ENSRNOG00000021156|vascular endothelial growth factor B [Source:RGD Symbol%3BAcc:619799]
rn6_v1_chrX_-_136150209_136150209	0.0220276	Hoxd12	ENSRNOT00000048498|Enox2|ENSRNOG00000030622|ecto-NOX disulfide-thiol exchanger 2 [Source:RGD Symbol%3BAcc:1563643]
rn6_v1_chr9_+_118586179_118586179	0.0215565	Hoxd12	ENSRNOT00000022351|Dlgap1|ENSRNOG00000016196|DLG associated protein 1 [Source:RGD Symbol%3BAcc:620223]
rn6_v1_chr10_-_37311625_37311625	0.021241	Hoxd12	ENSRNOT00000043343|Jade2|ENSRNOG00000004956|jade family PHD finger 2 [Source:RGD Symbol%3BAcc:1309152]
rn6_v1_chr3_+_151126591_151126591	0.0210165	Hoxd12	ENSRNOT00000025859|Myh7b|ENSRNOG00000018997|myosin heavy chain 7B [Source:RGD Symbol%3BAcc:1307994]
rn6_v1_chr9_-_30844199_30844199	0.0202298	Hoxd12	ENSRNOT00000017169|Col19a1|ENSRNOG00000012759|collagen type XIX alpha 1 chain [Source:RGD Symbol%3BAcc:1308920]
rn6_v1_chr1_-_163554839_163554839	0.0199989	Hoxd12	ENSRNOT00000081509|Emsy|ENSRNOG00000015560|EMSY BRCA2-interacting transcriptional repressor [Source:RGD Symbol%3BAcc:1310712]
rn6_v1_chr8_+_103938520_103938520	0.0198166	Hoxd12	ENSRNOT00000067835|Gk5|ENSRNOG00000010942|glycerol kinase 5 (putative) [Source:RGD Symbol%3BAcc:1311223]
rn6_v1_chr4_-_179512471_179512471	0.0182567	Hoxd12	ENSRNOT00000012588|Kras|ENSRNOG00000009338|KRAS proto-oncogene%2C GTPase [Source:RGD Symbol%3BAcc:2981]
rn6_v1_chr8_-_22086095_22086095	0.0176076	Hoxd12	ENSRNOT00000068598|Zglp1|ENSRNOG00000042601|zinc finger%2C GATA-like protein 1 [Source:RGD Symbol%3BAcc:2322460]
rn6_v1_chr14_-_16903242_16903242	0.0173374	Hoxd12	ENSRNOT00000003001|Shroom3|ENSRNOG00000002208|shroom family member 3 [Source:RGD Symbol%3BAcc:1310470]
rn6_v1_chr3_-_67787990_67787990	0.0170048	Hoxd12	ENSRNOT00000064851|Nckap1|ENSRNOG00000007518|NCK-associated protein 1 [Source:RGD Symbol%3BAcc:61939]
rn6_v1_chr8_-_133128290_133128290	0.0167955	Hoxd12	ENSRNOT00000008783|Ccr1l1|ENSRNOG00000006730|chemokine (C-C motif) receptor 1-like 1 [Source:RGD Symbol%3BAcc:1308007]
rn6_v1_chr2_+_52431601_52431601	0.0162331	Hoxd12	ENSRNOT00000023554|Hmgcs1|ENSRNOG00000016552|3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:RGD Symbol%3BAcc:70970]
rn6_v1_chr15_-_48284548_48284548	0.0147588	Hoxd12	ENSRNOT00000038336|Hmbox1|ENSRNOG00000013326|homeobox containing 1 [Source:RGD Symbol%3BAcc:1306787]
rn6_v1_chr7_-_59547174_59547174	0.0131344	Hoxd12	ENSRNOT00000085836|Cnot2|ENSRNOG00000004909|CCR4-NOT transcription complex%2C subunit 2 [Source:RGD Symbol%3BAcc:1311672]
rn6_v1_chr2_+_185846232_185846232	0.0131021	Hoxd12	ENSRNOT00000023418|Lrba|ENSRNOG00000023453|LPS responsive beige-like anchor protein [Source:RGD Symbol%3BAcc:1311428]
rn6_v1_chr13_-_107886476_107886476	0.0126744	Hoxd12	ENSRNOT00000077282|Kcnk2|ENSRNOG00000002653|potassium two pore domain channel subfamily K member 2 [Source:RGD Symbol%3BAcc:621448]
rn6_v1_chr3_-_90751055_90751055	0.0126384	Hoxd12	ENSRNOT00000040741|LOC499843|ENSRNOG00000032177|LRRGT00091 [Source:RGD Symbol%3BAcc:1560877]
rn6_v1_chr5_-_50221095_50221095	0.0120482	Hoxd12	ENSRNOT00000012164|RGD1563056|ENSRNOG00000009178|similar to hypothetical protein [Source:RGD Symbol%3BAcc:1563056]
rn6_v1_chr7_-_134722215_134722215	0.0120345	Hoxd12	ENSRNOT00000036750|Prickle1|ENSRNOG00000022772|prickle planar cell polarity protein 1 [Source:RGD Symbol%3BAcc:735090]
rn6_v1_chr7_+_140829076_140829076	0.0119879	Hoxd12	ENSRNOT00000086179|Spats2|ENSRNOG00000052307|spermatogenesis associated%2C serine-rich 2 [Source:RGD Symbol%3BAcc:1304780]
rn6_v1_chr10_+_70262361_70262366	0.0118731	Hoxd12	ENSRNOT00000064625|Unc45b|ENSRNOG00000009466|unc-45 myosin chaperone B [Source:RGD Symbol%3BAcc:1305666]	ENSRNOT00000076973|Unc45b|ENSRNOG00000009466|unc-45 myosin chaperone B [Source:RGD Symbol%3BAcc:1305666]
rn6_v1_chr2_+_226563050_226563050	0.0114448	Hoxd12	ENSRNOT00000065111|Bcar3|ENSRNOG00000013737|breast cancer anti-estrogen resistance 3 [Source:RGD Symbol%3BAcc:1311688]
rn6_v1_chr15_-_55209342_55209342	0.0111283	Hoxd12	ENSRNOT00000021752|Rb1|ENSRNOG00000016029|RB transcriptional corepressor 1 [Source:RGD Symbol%3BAcc:3540]
rn6_v1_chr3_+_48096954_48096954	0.0102932	Hoxd12	ENSRNOT00000068238|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]	ENSRNOT00000064344|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]	ENSRNOT00000044638|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]
rn6_v1_chr5_+_4373626_4373626	0.0102773	Hoxd12	ENSRNOT00000064946|Eya1|ENSRNOG00000007590|EYA transcriptional coactivator and phosphatase 1 [Source:RGD Symbol%3BAcc:1584849]
rn6_v1_chr8_+_106816152_106816152	0.0093201	Hoxd12	ENSRNOT00000047613|Faim|ENSRNOG00000030069|Fas apoptotic inhibitory molecule [Source:RGD Symbol%3BAcc:620572]
rn6_v1_chr17_+_78876111_78876111	0.00911268	Hoxd12	ENSRNOT00000057895|Rpl34-ps1|ENSRNOG00000038045|ribosomal protein L34%2C pseudogene 1 [Source:RGD Symbol%3BAcc:1595454]
rn6_v1_chr2_+_184230459_184230459	0.00866504	Hoxd12	ENSRNOT00000074187|AABR07012054.1|ENSRNOG00000049530|
rn6_v1_chr7_-_93280009_93280009	0.0085869	Hoxd12	ENSRNOT00000064877|Samd12|ENSRNOG00000043390|sterile alpha motif domain containing 12 [Source:RGD Symbol%3BAcc:1561402]
rn6_v1_chr5_+_64566804_64566804	0.00791328	Hoxd12	ENSRNOT00000073192|LOC103690035|ENSRNOG00000050760|TGF-beta receptor type-1-like [Source:RGD Symbol%3BAcc:9435399]
rn6_v1_chr8_+_107229832_107229832	0.00676905	Hoxd12	ENSRNOT00000045821|Faim|ENSRNOG00000030463|Fas apoptotic inhibitory molecule [Source:RGD Symbol%3BAcc:620572]
rn6_v1_chr1_+_255579474_255579474	0.00675347	Hoxd12	ENSRNOT00000024465|Btaf1|ENSRNOG00000017938|B-TFIID TATA-box binding protein associated factor 1 [Source:RGD Symbol%3BAcc:1564130]
rn6_v1_chr18_+_14756684_14756684	0.00599035	Hoxd12	ENSRNOT00000076085|Mapre2|ENSRNOG00000047261|microtubule-associated protein%2C RP/EB family%2C member 2 [Source:RGD Symbol%3BAcc:1590736]	ENSRNOT00000076129|Mapre2|ENSRNOG00000047261|microtubule-associated protein%2C RP/EB family%2C member 2 [Source:RGD Symbol%3BAcc:1590736]
rn6_v1_chr7_+_123168811_123168811	0.00594192	Hoxd12	ENSRNOT00000007091|Csdc2|ENSRNOG00000005332|cold shock domain containing C2 [Source:RGD Symbol%3BAcc:628780]
rn6_v1_chr4_-_176679815_176679815	0.00563695	Hoxd12	ENSRNOT00000090122|Gys2|ENSRNOG00000059753|glycogen synthase 2 [Source:RGD Symbol%3BAcc:2773]
rn6_v1_chr1_+_78546012_78546012	0.0055345	Hoxd12	ENSRNOT00000058172|Gng5|ENSRNOG00000038205|G protein subunit gamma 5 [Source:RGD Symbol%3BAcc:620807]
rn6_v1_chr10_-_87248572_87248632	0.00540483	Hoxd12	ENSRNOT00000066637|Krt26|ENSRNOG00000033617|keratin 26 [Source:RGD Symbol%3BAcc:1303322]	ENSRNOT00000085677|Krt26|ENSRNOG00000033617|keratin 26 [Source:RGD Symbol%3BAcc:1303322]
rn6_v1_chr16_+_22361998_22361998	0.00505485	Hoxd12	ENSRNOT00000016193|Slc18a1|ENSRNOG00000011992|solute carrier family 18 member A1 [Source:RGD Symbol%3BAcc:3693]
rn6_v1_chr8_-_6235967_6235967	0.0046976	Hoxd12	ENSRNOT00000068290|LOC654482|ENSRNOG00000043410|hypothetical protein LOC654482 [Source:RGD Symbol%3BAcc:1591894]
rn6_v1_chr9_+_66058047_66058047	0.00466744	Hoxd12	ENSRNOT00000071819|Cdk15|ENSRNOG00000022899|cyclin-dependent kinase 15 [Source:RGD Symbol%3BAcc:1306205]
rn6_v1_chr8_+_59507990_59507990	0.00377812	Hoxd12	ENSRNOT00000018003|Hykk|ENSRNOG00000013419|hydroxylysine kinase [Source:RGD Symbol%3BAcc:1308677]
rn6_v1_chr5_-_154965027_154965171	0.00304064	Hoxd12	ENSRNOT00000080881|Kdm1a|ENSRNOG00000022372|lysine demethylase 1A [Source:RGD Symbol%3BAcc:1562975]	ENSRNOT00000055992|Kdm1a|ENSRNOG00000022372|lysine demethylase 1A [Source:RGD Symbol%3BAcc:1562975]
rn6_v1_chr3_-_105663457_105663457	0.00294998	Hoxd12	ENSRNOT00000067646|Zfp770|ENSRNOG00000043037|zinc finger protein 770 [Source:RGD Symbol%3BAcc:1597283]
rn6_v1_chr1_+_143036218_143036218	0.00273814	Hoxd12	ENSRNOT00000025797|Pde8a|ENSRNOG00000019005|phosphodiesterase 8A [Source:RGD Symbol%3BAcc:735125]
rn6_v1_chr5_-_115387377_115387413	0.00203884	Hoxd12	ENSRNOT00000036030|RGD1560146|ENSRNOG00000026169|similar to hypothetical protein MGC34837 [Source:RGD Symbol%3BAcc:1560146]	ENSRNOT00000077492|RGD1560146|ENSRNOG00000026169|similar to hypothetical protein MGC34837 [Source:RGD Symbol%3BAcc:1560146]
rn6_v1_chr1_-_93949187_93949187	0.00168814	Hoxd12	ENSRNOT00000018956|Zfp536|ENSRNOG00000014163|zinc finger protein 536 [Source:RGD Symbol%3BAcc:1563363]
rn6_v1_chr13_+_77485113_77485113	0.00153914	Hoxd12	ENSRNOT00000080254|Tnr|ENSRNOG00000002468|tenascin R [Source:RGD Symbol%3BAcc:3886]
rn6_v1_chr2_+_188745503_188745503	0.00106797	Hoxd12	ENSRNOT00000056652|Shc1|ENSRNOG00000020657|SHC adaptor protein 1 [Source:RGD Symbol%3BAcc:620446]
rn6_v1_chr1_+_99616447_99616447	0.00104426	Hoxd12	ENSRNOT00000029197|Klk14|ENSRNOG00000033706|kallikrein related-peptidase 14 [Source:RGD Symbol%3BAcc:1308606]
rn6_v1_chr14_+_104480662_104480662	0.000515962	Hoxd12	ENSRNOT00000078710|Rab1a|ENSRNOG00000004992|RAB1A%2C member RAS oncogene family [Source:RGD Symbol%3BAcc:619736]
