rn6_v1_chr10_-_88670430_88670430	0.381842	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000025547|Hcrt|ENSRNOG00000018892|hypocretin neuropeptide precursor [Source:RGD Symbol%3BAcc:2786]
rn6_v1_chr6_+_8886591_8886730	0.300464	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000091510|Six3|ENSRNOG00000057031|SIX homeobox 3 [Source:RGD Symbol%3BAcc:620909]	ENSRNOT00000089174|Six3|ENSRNOG00000057031|SIX homeobox 3 [Source:RGD Symbol%3BAcc:620909]
rn6_v1_chr12_-_2174131_2174131	0.101524	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000001313|Pcp2|ENSRNOG00000000993|Purkinje cell protein 2 [Source:RGD Symbol%3BAcc:1306217]
rn6_v1_chr4_-_80395502_80395502	0.0985976	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000014437|Npvf|ENSRNOG00000010806|neuropeptide VF precursor [Source:RGD Symbol%3BAcc:61815]
rn6_v1_chr2_+_210880777_210880777	0.0916485	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000026237|Gnat2|ENSRNOG00000019296|G protein subunit alpha transducin 2 [Source:RGD Symbol%3BAcc:1309514]
rn6_v1_chr20_+_44680449_44680449	0.0738291	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000000728|Traf3ip2|ENSRNOG00000000595|Traf3 interacting protein 2 [Source:RGD Symbol%3BAcc:1593240]
rn6_v1_chr2_+_145174876_145174876	0.0706476	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000040631|Mab21l1|ENSRNOG00000032941|mab-21 like 1 [Source:RGD Symbol%3BAcc:1589984]
rn6_v1_chr3_+_5709236_5709242	0.0657343	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000061201|Dbh|ENSRNOG00000006641|dopamine beta-hydroxylase [Source:RGD Symbol%3BAcc:2489]	ENSRNOT00000070887|Dbh|ENSRNOG00000006641|dopamine beta-hydroxylase [Source:RGD Symbol%3BAcc:2489]
rn6_v1_chr15_+_44441856_44441856	0.0601944	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000018006|Gnrh1|ENSRNOG00000013441|gonadotropin releasing hormone 1 [Source:RGD Symbol%3BAcc:2720]
rn6_v1_chr2_-_235249571_235249575	0.0527281	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000093631|Rrh|ENSRNOG00000053349|retinal pigment epithelium derived rhodopsin homolog [Source:RGD Symbol%3BAcc:1308948]	ENSRNOT00000085096|Rrh|ENSRNOG00000053349|retinal pigment epithelium derived rhodopsin homolog [Source:RGD Symbol%3BAcc:1308948]
rn6_v1_chr3_-_165537940_165537940	0.0523079	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000071119|Sall4|ENSRNOG00000050035|spalt-like transcription factor 4 [Source:RGD Symbol%3BAcc:1597672]	ENSRNOT00000070964|Sall4|ENSRNOG00000050035|spalt-like transcription factor 4 [Source:RGD Symbol%3BAcc:1597672]
rn6_v1_chr5_+_50381244_50381244	0.0479494	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000012385|Cga|ENSRNOG00000009269|glycoprotein hormones%2C alpha polypeptide [Source:RGD Symbol%3BAcc:620436]
rn6_v1_chr9_+_117795132_117795132	0.0446296	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000086943|Akain1|ENSRNOG00000053805|A-kinase anchor inhibitor 1 [Source:RGD Symbol%3BAcc:2324352]
rn6_v1_chr10_-_87232723_87232723	0.0440821	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000015150|Krt25|ENSRNOG00000011196|keratin 25 [Source:RGD Symbol%3BAcc:1359097]
rn6_v1_chr15_-_95514259_95514259	0.0431746	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000038433|Slitrk6|ENSRNOG00000022337|SLIT and NTRK-like family%2C member 6 [Source:RGD Symbol%3BAcc:1306550]
rn6_v1_chrX_+_118197217_118197217	0.0403597	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000090922|Htr2c|ENSRNOG00000030877|5-hydroxytryptamine receptor 2C [Source:RGD Symbol%3BAcc:2848]
rn6_v1_chr1_+_101178104_101178104	0.0372111	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000028072|Pth2|ENSRNOG00000020681|parathyroid hormone 2 [Source:RGD Symbol%3BAcc:1559447]
rn6_v1_chr14_+_59611434_59611434	0.0362805	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000065366|Cckar|ENSRNOG00000043124|cholecystokinin A receptor [Source:RGD Symbol%3BAcc:2289]
rn6_v1_chr3_+_9403840_9403840	0.035852	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000071380|NEWGENE_735020|ENSRNOG00000050781|pyroglutamylated RFamide peptide [Source:RGD Symbol%3BAcc:11442301]
rn6_v1_chr15_+_11298478_11298478	0.0303753	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000007672|Lrrc3b|ENSRNOG00000005857|leucine rich repeat containing 3B [Source:RGD Symbol%3BAcc:1311897]
rn6_v1_chr9_-_85243001_85243001	0.0288917	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000020219|Scg2|ENSRNOG00000015055|secretogranin II [Source:RGD Symbol%3BAcc:3626]
rn6_v1_chr6_-_77421286_77421286	0.0265106	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000011453|Nkx2-1|ENSRNOG00000008644|NK2 homeobox 1 [Source:RGD Symbol%3BAcc:3866]
rn6_v1_chr8_+_47674321_47674354	0.0263078	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000026170|Trim29|ENSRNOG00000021771|tripartite motif-containing 29 [Source:RGD Symbol%3BAcc:1307858]	ENSRNOT00000078776|Trim29|ENSRNOG00000021771|tripartite motif-containing 29 [Source:RGD Symbol%3BAcc:1307858]
rn6_v1_chr12_-_47142852_47142852	0.0261839	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000001591|Pop5|ENSRNOG00000001199|POP5 homolog%2C ribonuclease P/MRP subunit [Source:RGD Symbol%3BAcc:1311819]
rn6_v1_chr1_-_48825364_48825364	0.0258213	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000024213|Agpat4|ENSRNOG00000017731|1-acylglycerol-3-phosphate O-acyltransferase 4 [Source:RGD Symbol%3BAcc:619916]
rn6_v1_chr8_+_71914867_71914867	0.0236476	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000023372|Dapk2|ENSRNOG00000017332|death-associated protein kinase 2 [Source:RGD Symbol%3BAcc:1304708]
rn6_v1_chr2_+_198755262_198755262	0.0185128	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000028807|Rbm8a|ENSRNOG00000021215|RNA binding motif protein 8A [Source:RGD Symbol%3BAcc:1310099]
rn6_v1_chr10_-_88172910_88172910	0.0171456	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000046956|Krt42|ENSRNOG00000034087|keratin 42 [Source:RGD Symbol%3BAcc:1359182]
rn6_v1_chr20_-_3728844_3728844	0.016355	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000074958|Psors1c2|ENSRNOG00000048579|psoriasis susceptibility 1 candidate 2 [Source:RGD Symbol%3BAcc:1591981]
rn6_v1_chr12_-_45801842_45801842	0.016136	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000078837|AABR07036513.1|ENSRNOG00000059134|
rn6_v1_chr2_-_219262901_219262901	0.0156119	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000037068|Gpr88|ENSRNOG00000026953|G-protein coupled receptor 88 [Source:RGD Symbol%3BAcc:61921]
rn6_v1_chr12_+_24978483_24978483	0.0148209	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000040069|Eln|ENSRNOG00000001469|elastin [Source:RGD Symbol%3BAcc:67394]
rn6_v1_chr14_+_76732650_76732650	0.0135072	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000088197|Clnk|ENSRNOG00000051169|cytokine-dependent hematopoietic cell linker [Source:RGD Symbol%3BAcc:1562417]
rn6_v1_chr3_+_45683993_45683993	0.0134379	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000038983|Tanc1|ENSRNOG00000025394|tetratricopeptide repeat%2C ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol%3BAcc:1302949]
rn6_v1_chr17_+_11683862_11683862	0.0133118	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000024766|Msx2|ENSRNOG00000018355|msh homeobox 2 [Source:RGD Symbol%3BAcc:3116]
rn6_v1_chr8_+_106449321_106449321	0.0131175	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000018622|Rbp1|ENSRNOG00000013794|retinol binding protein 1 [Source:RGD Symbol%3BAcc:3543]
rn6_v1_chr5_-_28131133_28131133	0.0122009	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000067331|Slc26a7|ENSRNOG00000006096|solute carrier family 26 member 7 [Source:RGD Symbol%3BAcc:1310846]
rn6_v1_chr11_-_32550539_32550539	0.0121142	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000002715|Rcan1|ENSRNOG00000001979|regulator of calcineurin 1 [Source:RGD Symbol%3BAcc:631338]
rn6_v1_chr4_+_6827429_6827429	0.0117265	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000071737|Rheb|ENSRNOG00000050578|Ras homolog enriched in brain [Source:RGD Symbol%3BAcc:621840]
rn6_v1_chr1_+_185863043_185863043	0.0116812	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000079072|Sox6|ENSRNOG00000020514|SRY box 6 [Source:RGD Symbol%3BAcc:1309000]
rn6_v1_chr16_+_63958645_63958645	0.0112889	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000081522|Nrg1|ENSRNOG00000010392|neuregulin 1 [Source:RGD Symbol%3BAcc:621341]	ENSRNOT00000082355|Nrg1|ENSRNOG00000010392|neuregulin 1 [Source:RGD Symbol%3BAcc:621341]	ENSRNOT00000013991|Nrg1|ENSRNOG00000010392|neuregulin 1 [Source:RGD Symbol%3BAcc:621341]
rn6_v1_chr6_-_125723732_125723732	0.0109377	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000084815|Fbln5|ENSRNOG00000050539|fibulin 5 [Source:RGD Symbol%3BAcc:2594]
rn6_v1_chr1_-_279277339_279277339	0.0105794	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000023667|Gfra1|ENSRNOG00000017438|GDNF family receptor alpha 1 [Source:RGD Symbol%3BAcc:2681]
rn6_v1_chr3_+_122544788_122544788	0.00961004	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000063828|Tgm3|ENSRNOG00000006753|transglutaminase 3 [Source:RGD Symbol%3BAcc:1561831]
rn6_v1_chr3_-_171342646_171342646	0.00949655	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000071853|Pmepa1|ENSRNOG00000050404|prostate transmembrane protein%2C androgen induced 1 [Source:RGD Symbol%3BAcc:1308255]
rn6_v1_chr4_-_67610710_67610710	0.00941351	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000039067|Mrps33|ENSRNOG00000026528|mitochondrial ribosomal protein S33 [Source:RGD Symbol%3BAcc:1309217]
rn6_v1_chr9_+_40817654_40817654	0.00928198	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000037392|AABR07067339.1|ENSRNOG00000022456|
rn6_v1_chr4_+_61924013_61924013	0.00909592	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000090717|Bpgm|ENSRNOG00000010133|bisphosphoglycerate mutase [Source:RGD Symbol%3BAcc:735018]
rn6_v1_chr5_-_28130803_28130803	0.00881373	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000093186|Slc26a7|ENSRNOG00000006096|solute carrier family 26 member 7 [Source:RGD Symbol%3BAcc:1310846]
rn6_v1_chrX_+_6273733_6273733	0.00872328	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000074275|Ndp|ENSRNOG00000046042|NDP%2C norrin cystine knot growth factor [Source:RGD Symbol%3BAcc:1563968]
rn6_v1_chr1_+_105284753_105284753	0.0086919	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000041950|Slc6a5|ENSRNOG00000031662|solute carrier family 6 member 5 [Source:RGD Symbol%3BAcc:621824]
rn6_v1_chr2_+_158097843_158097843	0.00868774	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000016541|Ptx3|ENSRNOG00000012280|pentraxin 3 [Source:RGD Symbol%3BAcc:1593476]
rn6_v1_chr18_-_31109025_31109025	0.00806709	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000026381|Fchsd1|ENSRNOG00000039415|FCH and double SH3 domains 1 [Source:RGD Symbol%3BAcc:1308240]
rn6_v1_chr7_-_143228060_143228060	0.00768168	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000088923|Krt75|ENSRNOG00000043203|keratin 75 [Source:RGD Symbol%3BAcc:1359576]	ENSRNOT00000012640|Krt75|ENSRNOG00000043203|keratin 75 [Source:RGD Symbol%3BAcc:1359576]
rn6_v1_chr20_-_25826658_25826658	0.00729798	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000057950|Ctnna3|ENSRNOG00000000373|catenin alpha 3 [Source:RGD Symbol%3BAcc:1562230]	ENSRNOT00000084660|Ctnna3|ENSRNOG00000000373|catenin alpha 3 [Source:RGD Symbol%3BAcc:1562230]
rn6_v1_chr2_+_239415046_239415046	0.00724958	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000072196|Cxxc4|ENSRNOG00000045764|CXXC finger protein 4 [Source:RGD Symbol%3BAcc:69228]
rn6_v1_chr1_-_134871167_134871167	0.00708252	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000076300|Chd2|ENSRNOG00000012716|chromodomain helicase DNA binding protein 2 [Source:RGD Symbol%3BAcc:1310056]
rn6_v1_chr2_-_170301348_170301348	0.00632424	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000088131|Si|ENSRNOG00000031067|sucrase-isomaltase [Source:RGD Symbol%3BAcc:3675]
rn6_v1_chrM_+_7006_7006	0.00587566	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000043693|Mt-co2|ENSRNOG00000030371|mitochondrially encoded cytochrome c oxidase II [Source:RGD Symbol%3BAcc:621872]
rn6_v1_chr3_+_56766475_56766475	0.00514727	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000078819|Sp5|ENSRNOG00000054086|Sp5 transcription factor [Source:RGD Symbol%3BAcc:1308499]
rn6_v1_chr7_+_35773928_35773928	0.00510065	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000034639|Cep83|ENSRNOG00000007859|centrosomal protein 83 [Source:RGD Symbol%3BAcc:1359593]
rn6_v1_chr18_+_81694808_81694808	0.00481389	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000020446|Cyb5a|ENSRNOG00000015205|cytochrome b5 type A [Source:RGD Symbol%3BAcc:620558]
rn6_v1_chr4_+_158088505_158088505	0.00393314	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000026643|Vwf|ENSRNOG00000019689|von Willebrand factor [Source:RGD Symbol%3BAcc:621759]
rn6_v1_chr8_-_40137390_40137390	0.00322117	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000042717|Panx3|ENSRNOG00000031675|pannexin 3 [Source:RGD Symbol%3BAcc:735137]
rn6_v1_chr10_+_53740841_53740841	0.00300156	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000004295|Myh2|ENSRNOG00000049695|myosin heavy chain 2 [Source:RGD Symbol%3BAcc:620354]
rn6_v1_chr13_+_49005405_49005413	0.00208174	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000092560|Lemd1|ENSRNOG00000051244|LEM domain containing 1 [Source:RGD Symbol%3BAcc:2322707]	ENSRNOT00000076457|Lemd1|ENSRNOG00000051244|LEM domain containing 1 [Source:RGD Symbol%3BAcc:2322707]
rn6_v1_chr4_-_4473307_4473307	0.0014244	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000045773|Dpp6|ENSRNOG00000030547|dipeptidyl peptidase like 6 [Source:RGD Symbol%3BAcc:68402]
rn6_v1_chr16_-_39476384_39476384	0.0010496	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000092968|Gpm6a|ENSRNOG00000010731|glycoprotein m6a [Source:RGD Symbol%3BAcc:631368]
rn6_v1_chr1_-_151106802_151106802	0.000869779	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000021971|Tyr|ENSRNOG00000016421|tyrosinase [Source:RGD Symbol%3BAcc:1589755]
rn6_v1_chr6_-_71199110_71199110	0.000824713	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000081883|Prkd1|ENSRNOG00000004165|protein kinase D1 [Source:RGD Symbol%3BAcc:620964]
rn6_v1_chr5_-_12526962_12526962	0.000624037	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000092104|St18|ENSRNOG00000006200|suppression of tumorigenicity 18 [Source:RGD Symbol%3BAcc:708566]
rn6_v1_chr13_+_79378733_79378733	0.000584654	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000039221|Tnfsf18|ENSRNOG00000026607|tumor necrosis factor superfamily member 18 [Source:RGD Symbol%3BAcc:1305066]
rn6_v1_chr1_-_101819478_101819478	0.000551392	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000056181|Grwd1|ENSRNOG00000021058|glutamate-rich WD repeat containing 1 [Source:RGD Symbol%3BAcc:1310649]
rn6_v1_chr2_+_240642847_240642847	0.000402164	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000079694|Ube2d3|ENSRNOG00000013741|ubiquitin-conjugating enzyme E2D 3 [Source:RGD Symbol%3BAcc:619912]
rn6_v1_chr4_+_119225040_119225040	0.000239449	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000012365|Bmp10|ENSRNOG00000009316|bone morphogenetic protein 10 [Source:RGD Symbol%3BAcc:1562986]
rn6_v1_chr11_-_60679555_60679555	0.000176081	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSRNOT00000059735|Ccdc80|ENSRNOG00000002052|coiled-coil domain containing 80 [Source:RGD Symbol%3BAcc:69421]
