rn6_v1_chr13_-_86671515_86671515	0.0696757	Msx2_Hoxd4	ENSRNOT00000082869|AABR07021704.1|ENSRNOG00000058096|
rn6_v1_chr2_+_72006099_72006099	0.0644216	Msx2_Hoxd4	ENSRNOT00000034044|Cdh12|ENSRNOG00000026392|cadherin 12 [Source:RGD Symbol%3BAcc:1566350]
rn6_v1_chr6_-_76552559_76552559	0.0638075	Msx2_Hoxd4	ENSRNOT00000065230|Ralgapa1|ENSRNOG00000046256|Ral GTPase activating protein catalytic alpha subunit 1 [Source:RGD Symbol%3BAcc:620642]
rn6_v1_chr9_-_30844199_30844199	0.0604634	Msx2_Hoxd4	ENSRNOT00000017169|Col19a1|ENSRNOG00000012759|collagen type XIX alpha 1 chain [Source:RGD Symbol%3BAcc:1308920]
rn6_v1_chr2_-_31753528_31753528	0.0508048	Msx2_Hoxd4	ENSRNOT00000075057|Pik3r1|ENSRNOG00000018903|phosphoinositide-3-kinase regulatory subunit 1 [Source:RGD Symbol%3BAcc:3329]
rn6_v1_chr20_+_25990656_25990656	0.0477564	Msx2_Hoxd4	ENSRNOT00000081254|Lrrtm3|ENSRNOG00000026466|leucine rich repeat transmembrane neuronal 3 [Source:RGD Symbol%3BAcc:1304866]
rn6_v1_chr19_+_25043680_25043680	0.046974	Msx2_Hoxd4	ENSRNOT00000043971|Adgrl1|ENSRNOG00000029134|adhesion G protein-coupled receptor L1 [Source:RGD Symbol%3BAcc:620768]
rn6_v1_chr5_-_168734296_168734296	0.0451613	Msx2_Hoxd4	ENSRNOT00000066120|Camta1|ENSRNOG00000018602|calmodulin binding transcription activator 1 [Source:RGD Symbol%3BAcc:1562703]
rn6_v1_chrX_+_908044_908044	0.0437072	Msx2_Hoxd4	ENSRNOT00000072087|Zfp300|ENSRNOG00000046469|zinc finger protein 300 [Source:RGD Symbol%3BAcc:2321626]
rn6_v1_chr15_+_56666012_56666012	0.0423723	Msx2_Hoxd4	ENSRNOT00000013408|Htr2a|ENSRNOG00000010063|5-hydroxytryptamine receptor 2A [Source:RGD Symbol%3BAcc:61800]
rn6_v1_chr1_-_166912524_166912524	0.0404067	Msx2_Hoxd4	ENSRNOT00000092952|Inppl1|ENSRNOG00000019730|inositol polyphosphate phosphatase-like 1 [Source:RGD Symbol%3BAcc:68396]
rn6_v1_chr13_-_76049363_76049363	0.036399	Msx2_Hoxd4	ENSRNOT00000075865|Brinp2|ENSRNOG00000005592|BMP/retinoic acid inducible neural specific 2 [Source:RGD Symbol%3BAcc:708419]	ENSRNOT00000007455|Brinp2|ENSRNOG00000005592|BMP/retinoic acid inducible neural specific 2 [Source:RGD Symbol%3BAcc:708419]
rn6_v1_chr6_+_64789940_64790112	0.0346217	Msx2_Hoxd4	ENSRNOT00000085979|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000059739|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000051908|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000082793|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000078583|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000091677|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000093241|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]
rn6_v1_chr6_+_27887797_27887797	0.0333674	Msx2_Hoxd4	ENSRNOT00000015827|Asxl2|ENSRNOG00000011908|additional sex combs like 2%2C transcriptional regulator [Source:RGD Symbol%3BAcc:1304710]
rn6_v1_chr14_+_38192870_38192870	0.0329996	Msx2_Hoxd4	ENSRNOT00000077080|Nfxl1|ENSRNOG00000058588|nuclear transcription factor%2C X-box binding-like 1 [Source:RGD Symbol%3BAcc:1359201]
rn6_v1_chr9_+_52687868_52687868	0.0324677	Msx2_Hoxd4	ENSRNOT00000083864|Wdr75|ENSRNOG00000003825|WD repeat domain 75 [Source:RGD Symbol%3BAcc:1564869]
rn6_v1_chr19_-_22194740_22194740	0.0319487	Msx2_Hoxd4	ENSRNOT00000086187|Phkb|ENSRNOG00000024101|phosphorylase kinase regulatory subunit beta [Source:RGD Symbol%3BAcc:620186]
rn6_v1_chr1_+_47032113_47032113	0.031658	Msx2_Hoxd4	ENSRNOT00000024412|Tulp4|ENSRNOG00000018012|tubby like protein 4 [Source:RGD Symbol%3BAcc:1564487]
rn6_v1_chr11_-_29710849_29710849	0.0291583	Msx2_Hoxd4	ENSRNOT00000029345|Krtap11-1|ENSRNOG00000027478|keratin associated protein 11-1 [Source:RGD Symbol%3BAcc:2323257]
rn6_v1_chr3_-_25212049_25212049	0.0266529	Msx2_Hoxd4	ENSRNOT00000040023|Lrp1b|ENSRNOG00000039050|LDL receptor related protein 1B [Source:RGD Symbol%3BAcc:1306160]
rn6_v1_chr2_-_35104963_35104963	0.0266448	Msx2_Hoxd4	ENSRNOT00000018058|Rgs7bp|ENSRNOG00000013389|regulator of G-protein signaling 7-binding protein  [Source:RefSeq peptide%3BAcc:NP_001012347]
rn6_v1_chr18_-_1828606_1828606	0.0263482	Msx2_Hoxd4	ENSRNOT00000033312|Esco1|ENSRNOG00000014031|establishment of sister chromatid cohesion N-acetyltransferase 1 [Source:RGD Symbol%3BAcc:1596873]
rn6_v1_chr2_+_127489771_127489771	0.0263292	Msx2_Hoxd4	ENSRNOT00000093581|Intu|ENSRNOG00000010556|inturned planar cell polarity protein [Source:RGD Symbol%3BAcc:1309446]
rn6_v1_chr9_-_63641400_63641400	0.0258917	Msx2_Hoxd4	ENSRNOT00000087684|Satb2|ENSRNOG00000010188|SATB homeobox 2 [Source:RGD Symbol%3BAcc:1562369]
rn6_v1_chr15_-_71779033_71779033	0.0258518	Msx2_Hoxd4	ENSRNOT00000017765|Pcdh20|ENSRNOG00000013306|protocadherin 20 [Source:RGD Symbol%3BAcc:1306297]
rn6_v1_chrX_+_84064427_84064427	0.0253252	Msx2_Hoxd4	ENSRNOT00000046364|Zfp711|ENSRNOG00000022391|zinc finger protein 711 [Source:RGD Symbol%3BAcc:1562768]
rn6_v1_chr3_-_90751055_90751055	0.0245111	Msx2_Hoxd4	ENSRNOT00000040741|LOC499843|ENSRNOG00000032177|LRRGT00091 [Source:RGD Symbol%3BAcc:1560877]
rn6_v1_chr2_-_33025271_33025271	0.024382	Msx2_Hoxd4	ENSRNOT00000074941|NEWGENE_1310139|ENSRNOG00000027002|microtubule associated serine/threonine kinase family member 4 [Source:RGD Symbol%3BAcc:9344213]
rn6_v1_chr13_+_46169963_46169963	0.024224	Msx2_Hoxd4	ENSRNOT00000005212|Thsd7b|ENSRNOG00000003878|thrombospondin type 1 domain containing 7B [Source:RGD Symbol%3BAcc:1306938]
rn6_v1_chr11_-_90406797_90406797	0.0236742	Msx2_Hoxd4	ENSRNOT00000073049|Snai2|ENSRNOG00000047699|snail family transcriptional repressor 2 [Source:RGD Symbol%3BAcc:3722]
rn6_v1_chr13_+_90533365_90533365	0.0233804	Msx2_Hoxd4	ENSRNOT00000082469|Dcaf8|ENSRNOG00000006785|DDB1 and CUL4 associated factor 8 [Source:RGD Symbol%3BAcc:1308513]
rn6_v1_chr8_+_70317586_70317586	0.0229394	Msx2_Hoxd4	ENSRNOT00000016260|Dennd4a|ENSRNOG00000011739|DENN domain containing 4A [Source:RGD Symbol%3BAcc:1562639]
rn6_v1_chr7_+_122818975_122818975	0.0228811	Msx2_Hoxd4	ENSRNOT00000000206|Ep300|ENSRNOG00000000190|E1A binding protein p300 [Source:RGD Symbol%3BAcc:620036]
rn6_v1_chr12_-_35979193_35979193	0.0222143	Msx2_Hoxd4	ENSRNOT00000071104|Tmem132b|ENSRNOG00000038406|transmembrane protein 132B [Source:RGD Symbol%3BAcc:1566191]
rn6_v1_chr2_-_30634243_30634243	0.0217222	Msx2_Hoxd4	ENSRNOT00000077537|Marveld2|ENSRNOG00000052167|MARVEL domain containing 2 [Source:RGD Symbol%3BAcc:1306909]
rn6_v1_chr5_+_104698040_104698040	0.0210213	Msx2_Hoxd4	ENSRNOT00000009127|Adamtsl1|ENSRNOG00000006956|ADAMTS-like 1 [Source:RGD Symbol%3BAcc:1306439]
rn6_v1_chr20_+_27975549_27975549	0.0192801	Msx2_Hoxd4	ENSRNOT00000092075|Lims1|ENSRNOG00000037765|LIM zinc finger domain containing 1 [Source:RGD Symbol%3BAcc:1560732]
rn6_v1_chr14_+_48768537_48768537	0.018697	Msx2_Hoxd4	ENSRNOT00000082599|Arap2|ENSRNOG00000056826|ArfGAP with RhoGAP domain%2C ankyrin repeat and PH domain 2 [Source:RGD Symbol%3BAcc:1306452]
rn6_v1_chr7_+_42304534_42304534	0.0186473	Msx2_Hoxd4	ENSRNOT00000085097|Kitlg|ENSRNOG00000005386|KIT ligand [Source:RGD Symbol%3BAcc:3086]
rn6_v1_chr2_+_196013799_196013799	0.0175669	Msx2_Hoxd4	ENSRNOT00000084023|Pogz|ENSRNOG00000053599|pogo transposable element with ZNF domain [Source:RGD Symbol%3BAcc:1309980]
rn6_v1_chr5_-_154363329_154363329	0.0169163	Msx2_Hoxd4	ENSRNOT00000064596|Eloa|ENSRNOG00000010902|elongin A [Source:RGD Symbol%3BAcc:3827]
rn6_v1_chr16_-_54137660_54137660	0.0161212	Msx2_Hoxd4	ENSRNOT00000085435|Pcm1|ENSRNOG00000010155|pericentriolar material 1 [Source:RGD Symbol%3BAcc:620901]
rn6_v1_chr19_+_32308236_32308236	0.0159239	Msx2_Hoxd4	ENSRNOT00000015508|Mmaa|ENSRNOG00000011618|methylmalonic aciduria (cobalamin deficiency) cblA type [Source:RGD Symbol%3BAcc:1305035]
rn6_v1_chr2_-_196377883_196377883	0.0153815	Msx2_Hoxd4	ENSRNOT00000028661|Gabpb2|ENSRNOG00000021105|GA binding protein transcription factor%2C beta subunit 2 [Source:RGD Symbol%3BAcc:1565234]
rn6_v1_chr19_+_43163129_43163129	0.0143442	Msx2_Hoxd4	ENSRNOT00000073721|Clec18a|ENSRNOG00000022721|C-type lectin domain family 18%2C member A [Source:RGD Symbol%3BAcc:1559899]
rn6_v1_chr8_-_96266342_96266342	0.0140191	Msx2_Hoxd4	ENSRNOT00000078891|Syncrip|ENSRNOG00000000204|synaptotagmin binding%2C cytoplasmic RNA interacting protein [Source:RGD Symbol%3BAcc:1305683]
rn6_v1_chr6_-_94834908_94834908	0.011995	Msx2_Hoxd4	ENSRNOT00000006284|L3hypdh|ENSRNOG00000004503|trans-L-3-hydroxyproline dehydratase [Source:RGD Symbol%3BAcc:1305721]
rn6_v1_chr6_+_69971227_69971227	0.0119426	Msx2_Hoxd4	ENSRNOT00000075349|Foxg1|ENSRNOG00000047891|forkhead box G1 [Source:RGD Symbol%3BAcc:2619]
rn6_v1_chr10_-_90940118_90940118	0.011939	Msx2_Hoxd4	ENSRNOT00000093143|Eftud2|ENSRNOG00000002818|elongation factor Tu GTP binding domain containing 2 [Source:RGD Symbol%3BAcc:1560116]
rn6_v1_chr11_-_782954_782954	0.0118216	Msx2_Hoxd4	ENSRNOT00000040065|Epha3|ENSRNOG00000030285|Eph receptor A3 [Source:RGD Symbol%3BAcc:68389]
rn6_v1_chr3_-_52447622_52447622	0.0111336	Msx2_Hoxd4	ENSRNOT00000083552|Scn1a|ENSRNOG00000053122|sodium voltage-gated channel alpha subunit 1 [Source:RGD Symbol%3BAcc:69364]
rn6_v1_chr5_-_48436531_48436531	0.010601	Msx2_Hoxd4	ENSRNOT00000060914|Pm20d2|ENSRNOG00000007755|peptidase M20 domain containing 2 [Source:RGD Symbol%3BAcc:1307853]
rn6_v1_chr17_-_53713408_53713408	0.010192	Msx2_Hoxd4	ENSRNOT00000022445|LOC100912163|ENSRNOG00000016391|AT-rich interactive domain-containing protein 4B-like [Source:RGD Symbol%3BAcc:6488837]
rn6_v1_chrX_-_106607352_106607352	0.00907408	Msx2_Hoxd4	ENSRNOT00000082858|AABR07040624.1|ENSRNOG00000058183|
rn6_v1_chrM_+_8599_8599	0.00871244	Msx2_Hoxd4	ENSRNOT00000049683|Mt-cox3|ENSRNOG00000030700|mitochondrially encoded cytochrome C oxidase III [Source:RGD Symbol%3BAcc:621873]
rn6_v1_chr14_-_45859908_45859908	0.00851528	Msx2_Hoxd4	ENSRNOT00000086994|Pgm2|ENSRNOG00000002185|phosphoglucomutase 2 [Source:RGD Symbol%3BAcc:1306061]
rn6_v1_chr2_-_181531978_181531978	0.00732167	Msx2_Hoxd4	ENSRNOT00000072029|Npy2r|ENSRNOG00000049213|neuropeptide Y receptor Y2 [Source:RGD Symbol%3BAcc:620475]
rn6_v1_chr4_-_129619142_129619142	0.00677204	Msx2_Hoxd4	ENSRNOT00000047453|Lmod3|ENSRNOG00000032443|leiomodin 3 [Source:RGD Symbol%3BAcc:1564924]
rn6_v1_chr11_+_61605937_61606006	0.00669955	Msx2_Hoxd4	ENSRNOT00000093455|Gramd1c|ENSRNOG00000053406|GRAM domain containing 1C [Source:RGD Symbol%3BAcc:1305433]	ENSRNOT00000093242|Gramd1c|ENSRNOG00000053406|GRAM domain containing 1C [Source:RGD Symbol%3BAcc:1305433]
rn6_v1_chr2_+_165805144_165805144	0.00668255	Msx2_Hoxd4	ENSRNOT00000073716|Rabif|ENSRNOG00000045814|RAB interacting factor [Source:RGD Symbol%3BAcc:1359331]
rn6_v1_chr2_-_210766501_210766501	0.00632031	Msx2_Hoxd4	ENSRNOT00000025800|Gstm3|ENSRNOG00000019058|glutathione S-transferase mu 3 [Source:RGD Symbol%3BAcc:620381]
rn6_v1_chr20_+_9948908_9948908	0.00596064	Msx2_Hoxd4	ENSRNOT00000001541|Ubash3a|ENSRNOG00000001167|ubiquitin associated and SH3 domain containing%2C A [Source:RGD Symbol%3BAcc:1310305]
rn6_v1_chr2_-_219262901_219262901	0.00444698	Msx2_Hoxd4	ENSRNOT00000037068|Gpr88|ENSRNOG00000026953|G-protein coupled receptor 88 [Source:RGD Symbol%3BAcc:61921]
rn6_v1_chr10_-_87521514_87521572	0.00375721	Msx2_Hoxd4	ENSRNOT00000084668|Krtap2-4l|ENSRNOG00000056967|keratin associated protein 2-4-like [Source:RGD Symbol%3BAcc:1595488]	ENSRNOT00000071705|Krtap2-4l|ENSRNOG00000056967|keratin associated protein 2-4-like [Source:RGD Symbol%3BAcc:1595488]
rn6_v1_chr5_-_12172009_12172009	0.00348406	Msx2_Hoxd4	ENSRNOT00000061903|Pcmtd1|ENSRNOG00000005730|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 [Source:RGD Symbol%3BAcc:1586096]
rn6_v1_chr16_+_50049828_50049828	0.00340804	Msx2_Hoxd4	ENSRNOT00000034448|Fam149a|ENSRNOG00000021693|family with sequence similarity 149%2C member A [Source:RGD Symbol%3BAcc:1586153]
rn6_v1_chr2_+_54466280_54466280	0.00308784	Msx2_Hoxd4	ENSRNOT00000033112|C6|ENSRNOG00000024115|complement C6 [Source:RGD Symbol%3BAcc:2238]
rn6_v1_chrM_+_7006_7006	0.00232527	Msx2_Hoxd4	ENSRNOT00000043693|Mt-co2|ENSRNOG00000030371|mitochondrially encoded cytochrome c oxidase II [Source:RGD Symbol%3BAcc:621872]
rn6_v1_chr10_+_65733991_65733991	0.00180884	Msx2_Hoxd4	ENSRNOT00000013698|Slc46a1|ENSRNOG00000010291|solute carrier family 46 member 1 [Source:RGD Symbol%3BAcc:1309472]
rn6_v1_chrM_+_7919_7919	0.00167626	Msx2_Hoxd4	ENSRNOT00000046108|Mt-atp6|ENSRNOG00000031979|mitochondrially encoded ATP synthase 6 [Source:RGD Symbol%3BAcc:621239]
rn6_v1_chr1_+_22364551_22364551	0.00098289	Msx2_Hoxd4	ENSRNOT00000043157|LOC108348200|ENSRNOG00000048934|trace amine-associated receptor 8a [Source:RGD Symbol%3BAcc:11501093]
rn6_v1_chr16_+_61926586_61926586	0.000153255	Msx2_Hoxd4	ENSRNOT00000058884|AABR07026059.1|ENSRNOG00000031959|
