rn6_v1_chr17_-_80860195_80860195	0.117386	Nkx3-1	ENSRNOT00000038651|Trdmt1|ENSRNOG00000026132|tRNA aspartic acid methyltransferase 1 [Source:RGD Symbol%3BAcc:1306292]
rn6_v1_chr3_+_176821652_176821652	0.104548	Nkx3-1	ENSRNOT00000055030|Rtel1|ENSRNOG00000027513|regulator of telomere elongation helicase 1 [Source:RGD Symbol%3BAcc:1306721]
rn6_v1_chr13_+_90723092_90723092	0.092576	Nkx3-1	ENSRNOT00000010146|Kcnj10|ENSRNOG00000007705|ATP-sensitive inward rectifier potassium channel 10  [Source:RefSeq peptide%3BAcc:NP_113790]
rn6_v1_chr2_+_43271092_43271092	0.0848222	Nkx3-1	ENSRNOT00000017571|Mier3|ENSRNOG00000013121|mesoderm induction early response 1%2C family member 3 [Source:RGD Symbol%3BAcc:1311241]
rn6_v1_chr10_-_89958805_89958805	0.0841363	Nkx3-1	ENSRNOT00000084266|Mpp3|ENSRNOG00000033653|membrane palmitoylated protein 3 [Source:RGD Symbol%3BAcc:620015]
rn6_v1_chr12_+_29266602_29266602	0.078115	Nkx3-1	ENSRNOT00000076194|Wbscr17|ENSRNOG00000024435|Williams-Beuren syndrome chromosome region 17 [Source:RGD Symbol%3BAcc:1563452]
rn6_v1_chr15_-_55209342_55209342	0.0772319	Nkx3-1	ENSRNOT00000021752|Rb1|ENSRNOG00000016029|RB transcriptional corepressor 1 [Source:RGD Symbol%3BAcc:3540]
rn6_v1_chr18_-_36513317_36513317	0.0739572	Nkx3-1	ENSRNOT00000025453|Plac8l1|ENSRNOG00000018820|PLAC8-like 1 [Source:RGD Symbol%3BAcc:1588513]
rn6_v1_chr6_+_27887797_27887797	0.0656686	Nkx3-1	ENSRNOT00000015827|Asxl2|ENSRNOG00000011908|additional sex combs like 2%2C transcriptional regulator [Source:RGD Symbol%3BAcc:1304710]
rn6_v1_chr1_+_80954858_80954858	0.0633224	Nkx3-1	ENSRNOT00000030440|Zfp112|ENSRNOG00000029022|zinc finger protein 112 [Source:RGD Symbol%3BAcc:1305757]
rn6_v1_chr2_-_49170025_49170025	0.0590258	Nkx3-1	ENSRNOT00000060595|Parp8|ENSRNOG00000010824|poly (ADP-ribose) polymerase family%2C member 8 [Source:RGD Symbol%3BAcc:1587384]
rn6_v1_chr17_-_32015071_32015071	0.0589275	Nkx3-1	ENSRNOT00000070876|LOC100911107|ENSRNOG00000048358|leukocyte elastase inhibitor A-like [Source:RGD Symbol%3BAcc:6495052]
rn6_v1_chr2_+_55747318_55747318	0.0562815	Nkx3-1	ENSRNOT00000050655|Dab2|ENSRNOG00000028930|DAB2%2C clathrin adaptor protein [Source:RGD Symbol%3BAcc:621007]
rn6_v1_chr8_+_19886382_19886382	0.0552691	Nkx3-1	ENSRNOT00000034254|Zfp317|ENSRNOG00000006684|zinc finger protein 317 [Source:RGD Symbol%3BAcc:1565419]
rn6_v1_chr8_-_118696187_118696187	0.0538364	Nkx3-1	ENSRNOT00000056141|Klhl18|ENSRNOG00000020880|kelch-like family member 18 [Source:RGD Symbol%3BAcc:1310570]
rn6_v1_chr8_-_13906355_13906355	0.0536391	Nkx3-1	ENSRNOT00000029634|Cep295|ENSRNOG00000010999|centrosomal protein 295 [Source:RGD Symbol%3BAcc:1311723]
rn6_v1_chr1_-_277939039_277939089	0.052033	Nkx3-1	ENSRNOT00000079579|Ablim1|ENSRNOG00000046333|actin-binding LIM protein 1 [Source:RGD Symbol%3BAcc:1565768]	ENSRNOT00000086726|Ablim1|ENSRNOG00000046333|actin-binding LIM protein 1 [Source:RGD Symbol%3BAcc:1565768]
rn6_v1_chr2_+_189714754_189714754	0.051702	Nkx3-1	ENSRNOT00000086285|Gatad2b|ENSRNOG00000015553|GATA zinc finger domain containing 2B [Source:RGD Symbol%3BAcc:1308533]
rn6_v1_chr8_+_99894762_99894762	0.0512874	Nkx3-1	ENSRNOT00000081768|Plscr4|ENSRNOG00000008151|phospholipid scramblase 4 [Source:RGD Symbol%3BAcc:1311693]
rn6_v1_chr1_+_13595295_13595295	0.0501835	Nkx3-1	ENSRNOT00000079250|Nhsl1|ENSRNOG00000060603|NHS-like 1 [Source:RGD Symbol%3BAcc:1308124]
rn6_v1_chr9_-_65957101_65957101	0.0496955	Nkx3-1	ENSRNOT00000014094|Mpp4|ENSRNOG00000010486|membrane palmitoylated protein 4 [Source:RGD Symbol%3BAcc:620016]
rn6_v1_chr12_+_37878653_37878653	0.0489919	Nkx3-1	ENSRNOT00000091084|Pitpnm2|ENSRNOG00000029260|phosphatidylinositol transfer protein%2C membrane-associated 2 [Source:RGD Symbol%3BAcc:1310867]
rn6_v1_chr17_-_89923423_89923423	0.0485271	Nkx3-1	ENSRNOT00000076964|Acbd5|ENSRNOG00000017642|acyl-CoA binding domain containing 5 [Source:RGD Symbol%3BAcc:1309411]
rn6_v1_chr1_+_263448633_263448633	0.0482697	Nkx3-1	ENSRNOT00000064510|Entpd7|ENSRNOG00000016883|ectonucleoside triphosphate diphosphohydrolase 7 [Source:RGD Symbol%3BAcc:1310638]
rn6_v1_chr16_-_21473808_21473808	0.0475066	Nkx3-1	ENSRNOT00000066776|Zfp964|ENSRNOG00000042504|zinc finger protein 964 [Source:RGD Symbol%3BAcc:2318713]
rn6_v1_chrX_+_15114892_15114892	0.0474722	Nkx3-1	ENSRNOT00000078168|Wdr13|ENSRNOG00000039587|WD repeat domain 13 [Source:RGD Symbol%3BAcc:1560982]
rn6_v1_chr19_+_9668186_9668186	0.0472741	Nkx3-1	ENSRNOT00000016563|Cnot1|ENSRNOG00000012271|CCR4-NOT transcription complex%2C subunit 1 [Source:RGD Symbol%3BAcc:1308009]
rn6_v1_chr5_-_166695134_166695134	0.0472416	Nkx3-1	ENSRNOT00000047763|Tmem201|ENSRNOG00000023152|transmembrane protein 201 [Source:RGD Symbol%3BAcc:1583947]
rn6_v1_chr17_-_69862110_69862110	0.0467113	Nkx3-1	ENSRNOT00000058312|Akr1cl|ENSRNOG00000021735|aldo-keto reductase family 1%2C member C-like [Source:RGD Symbol%3BAcc:1307514]
rn6_v1_chrX_+_159081445_159081445	0.0445544	Nkx3-1	ENSRNOT00000056688|AABR07042542.1|ENSRNOG00000037452|
rn6_v1_chr8_-_36388224_36388224	0.0436254	Nkx3-1	ENSRNOT00000038312|Tirap|ENSRNOG00000021420|TIR domain containing adaptor protein [Source:RGD Symbol%3BAcc:1595496]
rn6_v1_chr15_-_88670349_88670349	0.0434093	Nkx3-1	ENSRNOT00000012881|Rnf219|ENSRNOG00000009690|ring finger protein 219 [Source:RGD Symbol%3BAcc:1564706]
rn6_v1_chr14_+_108415068_108415068	0.0426335	Nkx3-1	ENSRNOT00000083763|Pus10|ENSRNOG00000054151|pseudouridylate synthase 10 [Source:RGD Symbol%3BAcc:1306402]
rn6_v1_chr3_+_112371677_112371677	0.0426311	Nkx3-1	ENSRNOT00000013316|LOC100912076|ENSRNOG00000048933|HAUS augmin-like complex subunit 2-like [Source:RGD Symbol%3BAcc:6489015]
rn6_v1_chr8_-_93390305_93390305	0.0421727	Nkx3-1	ENSRNOT00000056930|Ibtk|ENSRNOG00000027728|inhibitor of Bruton tyrosine kinase [Source:RGD Symbol%3BAcc:1311697]
rn6_v1_chr16_+_20039969_20039969	0.0420481	Nkx3-1	ENSRNOT00000024866|Colgalt1|ENSRNOG00000023317|collagen beta(1-O)galactosyltransferase 1 [Source:RGD Symbol%3BAcc:1309002]
rn6_v1_chr6_+_126874193_126874193	0.0417456	Nkx3-1	ENSRNOT00000011775|Unc79|ENSRNOG00000008728|unc-79 homolog (C. elegans) [Source:RGD Symbol%3BAcc:1311117]
rn6_v1_chr7_-_134482607_134482607	0.0412041	Nkx3-1	ENSRNOT00000081104|Gxylt1|ENSRNOG00000005234|glucoside xylosyltransferase 1 [Source:RGD Symbol%3BAcc:1563062]
rn6_v1_chr6_+_26390689_26390764	0.0408664	Nkx3-1	ENSRNOT00000079762|Ift172|ENSRNOG00000057813|intraflagellar transport 172 [Source:RGD Symbol%3BAcc:620744]	ENSRNOT00000091528|Ift172|ENSRNOG00000057813|intraflagellar transport 172 [Source:RGD Symbol%3BAcc:620744]
rn6_v1_chr18_+_30904498_30904498	0.0407286	Nkx3-1	ENSRNOT00000026969|Pcdhga11|ENSRNOG00000027232|protocadherin gamma subfamily A%2C 11 [Source:RGD Symbol%3BAcc:621232]
rn6_v1_chr18_-_35817117_35817127	0.0394353	Nkx3-1	ENSRNOT00000015172|Mcc|ENSRNOG00000011271|mutated in colorectal cancers [Source:RGD Symbol%3BAcc:1561988]	ENSRNOT00000085714|Mcc|ENSRNOG00000011271|mutated in colorectal cancers [Source:RGD Symbol%3BAcc:1561988]
rn6_v1_chr15_+_47455690_47455690	0.0392845	Nkx3-1	ENSRNOT00000075276|LOC100910401|ENSRNOG00000047637|serine protease 55-like [Source:RGD Symbol%3BAcc:6498506]
rn6_v1_chr6_+_2216623_2216623	0.0386114	Nkx3-1	ENSRNOT00000008045|Rmdn2|ENSRNOG00000006082|regulator of microtubule dynamics 2 [Source:RGD Symbol%3BAcc:1559836]
rn6_v1_chr16_+_53998560_53998604	0.0385647	Nkx3-1	ENSRNOT00000077188|Asah1|ENSRNOG00000010034|N-acylsphingosine amidohydrolase 1 [Source:RGD Symbol%3BAcc:621568]	ENSRNOT00000013463|Asah1|ENSRNOG00000010034|N-acylsphingosine amidohydrolase 1 [Source:RGD Symbol%3BAcc:621568]
rn6_v1_chr3_+_112385601_112385601	0.0377486	Nkx3-1	ENSRNOT00000056210|LOC691918|ENSRNOG00000046745|similar to Centrosomal protein of 27 kDa (Cep27 protein) [Source:RGD Symbol%3BAcc:1593362]
rn6_v1_chr13_+_98311827_98311827	0.0373054	Nkx3-1	ENSRNOT00000082844|Cdc42bpa|ENSRNOG00000002841|CDC42 binding protein kinase alpha [Source:RGD Symbol%3BAcc:621406]
rn6_v1_chr3_+_172155496_172155496	0.0369845	Nkx3-1	ENSRNOT00000066279|Stx16|ENSRNOG00000005281|syntaxin 16 [Source:RGD Symbol%3BAcc:1309423]
rn6_v1_chr5_+_135413275_135413275	0.0369159	Nkx3-1	ENSRNOT00000012263|Gpbp1l1|ENSRNOG00000037595|GC-rich promoter binding protein 1-like 1 [Source:RGD Symbol%3BAcc:1359562]
rn6_v1_chrX_-_40086870_40086870	0.0368253	Nkx3-1	ENSRNOT00000010027|Smpx|ENSRNOG00000007495|small muscle protein%2C X-linked [Source:RGD Symbol%3BAcc:69233]
rn6_v1_chr5_+_139783951_139783951	0.0364826	Nkx3-1	ENSRNOT00000081333|Rims3|ENSRNOG00000011171|regulating synaptic membrane exocytosis 3 [Source:RGD Symbol%3BAcc:628762]
rn6_v1_chr13_+_71110064_71110064	0.0364225	Nkx3-1	ENSRNOT00000088329|Rgs8|ENSRNOG00000002369|regulator of G-protein signaling 8 [Source:RGD Symbol%3BAcc:3571]
rn6_v1_chr13_-_26769374_26769374	0.0362545	Nkx3-1	ENSRNOT00000003768|Bcl2|ENSRNOG00000002791|BCL2%2C apoptosis regulator [Source:RGD Symbol%3BAcc:2199]
rn6_v1_chr3_-_112371664_112371664	0.0358253	Nkx3-1	ENSRNOT00000079606|LOC100910478|ENSRNOG00000048310|leucine-rich repeat-containing protein 57-like [Source:RGD Symbol%3BAcc:6498299]	ENSRNOT00000012636|LOC100910478|ENSRNOG00000048310|leucine-rich repeat-containing protein 57-like [Source:RGD Symbol%3BAcc:6498299]
rn6_v1_chr3_+_151688454_151688454	0.0355002	Nkx3-1	ENSRNOT00000026856|Romo1|ENSRNOG00000019823|reactive oxygen species modulator 1 [Source:RGD Symbol%3BAcc:1587111]
rn6_v1_chr3_+_80468154_80468154	0.0349583	Nkx3-1	ENSRNOT00000021837|Ckap5|ENSRNOG00000016067|cytoskeleton associated protein 5 [Source:RGD Symbol%3BAcc:1563596]
rn6_v1_chr2_+_197720259_197720259	0.0346308	Nkx3-1	ENSRNOT00000070919|Golph3l|ENSRNOG00000047620|golgi phosphoprotein 3-like [Source:RGD Symbol%3BAcc:1359281]
rn6_v1_chr6_+_86872903_86872903	0.0342517	Nkx3-1	ENSRNOT00000086894|Fancm|ENSRNOG00000056721|Fanconi anemia%2C complementation group M [Source:RGD Symbol%3BAcc:1307897]
rn6_v1_chr6_+_99625306_99625306	0.0342099	Nkx3-1	ENSRNOT00000008573|Plekhg3|ENSRNOG00000006570|pleckstrin homology and RhoGEF domain containing G3 [Source:RGD Symbol%3BAcc:1308089]
rn6_v1_chr1_+_156552328_156552328	0.0341613	Nkx3-1	ENSRNOT00000055401|Dlg2|ENSRNOG00000022635|discs large MAGUK scaffold protein 2 [Source:RGD Symbol%3BAcc:619895]
rn6_v1_chr7_+_2645196_2645196	0.0338478	Nkx3-1	ENSRNOT00000083899|Timeless|ENSRNOG00000031916|timeless circadian clock [Source:RGD Symbol%3BAcc:620939]
rn6_v1_chr16_+_54332660_54332660	0.0337793	Nkx3-1	ENSRNOT00000037685|Mtus1|ENSRNOG00000010748|microtubule associated tumor suppressor 1 [Source:RGD Symbol%3BAcc:631381]
rn6_v1_chr17_-_42226377_42226377	0.0333032	Nkx3-1	ENSRNOT00000024536|RGD1307443|ENSRNOG00000018141|similar to mKIAA0319 protein [Source:RGD Symbol%3BAcc:1307443]
rn6_v1_chr9_+_71230108_71230108	0.0325025	Nkx3-1	ENSRNOT00000018326|Creb1|ENSRNOG00000013412|cAMP responsive element binding protein 1 [Source:RGD Symbol%3BAcc:620218]
rn6_v1_chr15_+_27933211_27933211	0.032309	Nkx3-1	ENSRNOT00000013619|Rnase10|ENSRNOG00000010261|ribonuclease A family member 10 [Source:RGD Symbol%3BAcc:1310415]
rn6_v1_chr3_-_112385528_112385528	0.0306611	Nkx3-1	ENSRNOT00000049756|Lrrc57|ENSRNOG00000009143|leucine rich repeat containing 57 [Source:RGD Symbol%3BAcc:1307128]
rn6_v1_chr2_+_86914989_86914995	0.0304664	Nkx3-1	ENSRNOT00000085164|LOC100360380|ENSRNOG00000051606|zinc finger protein 457-like [Source:RGD Symbol%3BAcc:2322273]	ENSRNOT00000081966|LOC100360380|ENSRNOG00000051606|zinc finger protein 457-like [Source:RGD Symbol%3BAcc:2322273]
rn6_v1_chr2_-_54963448_54963448	0.0299854	Nkx3-1	ENSRNOT00000017886|Ptger4|ENSRNOG00000013240|prostaglandin E receptor 4 [Source:RGD Symbol%3BAcc:628641]
rn6_v1_chr9_-_81772851_81772851	0.0293965	Nkx3-1	ENSRNOT00000032719|Usp37|ENSRNOG00000022720|ubiquitin specific peptidase 37 [Source:RGD Symbol%3BAcc:2319715]
rn6_v1_chr7_-_139542461_139542461	0.0291151	Nkx3-1	ENSRNOT00000089425|Senp1|ENSRNOG00000054297|SUMO1/sentrin specific peptidase 1 [Source:RGD Symbol%3BAcc:1310275]
rn6_v1_chr14_+_106153575_106153575	0.0285408	Nkx3-1	ENSRNOT00000010264|Vps54|ENSRNOG00000007125|VPS54 GARP complex subunit [Source:RGD Symbol%3BAcc:628718]
rn6_v1_chr4_+_160020472_160020472	0.0282565	Nkx3-1	ENSRNOT00000078802|Parp11|ENSRNOG00000060689|poly (ADP-ribose) polymerase family%2C member 11 [Source:RGD Symbol%3BAcc:1561791]
rn6_v1_chr1_-_67134827_67134827	0.0282346	Nkx3-1	ENSRNOT00000045214|Vom1r45|ENSRNOG00000028882|vomeronasal 1 receptor 45 [Source:RGD Symbol%3BAcc:1359121]
rn6_v1_chr10_-_36419926_36419926	0.0281714	Nkx3-1	ENSRNOT00000004902|Znf354b|ENSRNOG00000029678|zinc finger protein 354B [Source:RGD Symbol%3BAcc:7562538]
rn6_v1_chr16_-_9658484_9658484	0.0274888	Nkx3-1	ENSRNOT00000065216|Mapk8|ENSRNOG00000020155|mitogen-activated protein kinase 8 [Source:RGD Symbol%3BAcc:621506]
rn6_v1_chr7_+_54031316_54031316	0.0273249	Nkx3-1	ENSRNOT00000039096|Bbs10|ENSRNOG00000026913|Bardet-Biedl syndrome 10 [Source:RGD Symbol%3BAcc:1560748]
rn6_v1_chr3_-_1868015_1868015	0.027259	Nkx3-1	ENSRNOT00000048945|Cacna1b|ENSRNOG00000004560|calcium voltage-gated channel subunit alpha1 B [Source:RGD Symbol%3BAcc:628852]
rn6_v1_chr14_+_77322012_77322040	0.0265359	Nkx3-1	ENSRNOT00000088600|Zbtb49|ENSRNOG00000005633|zinc finger and BTB domain containing 49 [Source:RGD Symbol%3BAcc:1306733]	ENSRNOT00000041639|Zbtb49|ENSRNOG00000005633|zinc finger and BTB domain containing 49 [Source:RGD Symbol%3BAcc:1306733]
rn6_v1_chr5_-_159293673_159293673	0.0263487	Nkx3-1	ENSRNOT00000009081|Padi4|ENSRNOG00000006855|peptidyl arginine deiminase 4 [Source:RGD Symbol%3BAcc:3290]
rn6_v1_chr5_+_6373583_6373583	0.0258924	Nkx3-1	ENSRNOT00000084749|AABR07046778.1|ENSRNOG00000058589|
rn6_v1_chr4_-_176596591_176596591	0.0258674	Nkx3-1	ENSRNOT00000086365|Recql|ENSRNOG00000012602|RecQ like helicase [Source:RGD Symbol%3BAcc:1311071]
rn6_v1_chr13_+_105684420_105684420	0.025615	Nkx3-1	ENSRNOT00000040543|Gpatch2|ENSRNOG00000002512|G patch domain containing 2 [Source:RGD Symbol%3BAcc:1308865]
rn6_v1_chr19_+_46455761_46455859	0.0252582	Nkx3-1	ENSRNOT00000034012|Nudt7|ENSRNOG00000011976|nudix hydrolase 7 [Source:RGD Symbol%3BAcc:1306719]	ENSRNOT00000093392|Nudt7|ENSRNOG00000011976|nudix hydrolase 7 [Source:RGD Symbol%3BAcc:1306719]
rn6_v1_chr13_+_89524329_89524329	0.0247196	Nkx3-1	ENSRNOT00000004279|Mpz|ENSRNOG00000003171|myelin protein zero [Source:RGD Symbol%3BAcc:3109]
rn6_v1_chr2_+_143895982_143895982	0.0239687	Nkx3-1	ENSRNOT00000080026|Supt20h|ENSRNOG00000059480|SPT20 homolog%2C SAGA complex component [Source:RGD Symbol%3BAcc:1307812]
rn6_v1_chr3_-_64554953_64554953	0.0238215	Nkx3-1	ENSRNOT00000067452|LOC102553814|ENSRNOG00000042321|serine/arginine repetitive matrix protein 1-like [Source:RGD Symbol%3BAcc:7718479]
rn6_v1_chr11_+_87224421_87224421	0.0233603	Nkx3-1	ENSRNOT00000000308|Dgcr14|ENSRNOG00000000283|DiGeorge syndrome critical region gene 14 [Source:RGD Symbol%3BAcc:1308218]
rn6_v1_chr2_-_231648122_231648122	0.0232008	Nkx3-1	ENSRNOT00000014962|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]
rn6_v1_chr10_+_13145099_13145099	0.0230782	Nkx3-1	ENSRNOT00000091287|Srrm2|ENSRNOG00000058561|serine/arginine repetitive matrix 2 [Source:RGD Symbol%3BAcc:1310163]
rn6_v1_chr7_+_40217991_40217991	0.0228906	Nkx3-1	ENSRNOT00000085684|Cep290|ENSRNOG00000056458|centrosomal protein 290 [Source:RGD Symbol%3BAcc:1311640]
rn6_v1_chr3_-_71798531_71798531	0.0227889	Nkx3-1	ENSRNOT00000088170|Calcrl|ENSRNOG00000054695|calcitonin receptor like receptor [Source:RGD Symbol%3BAcc:2255]
rn6_v1_chr13_-_82295123_82295123	0.0225551	Nkx3-1	ENSRNOT00000090120|LOC498265|ENSRNOG00000059276|similar to hypothetical protein FLJ10706 [Source:RGD Symbol%3BAcc:1563470]
rn6_v1_chrX_+_9436707_9436707	0.0225011	Nkx3-1	ENSRNOT00000004187|Cask|ENSRNOG00000003054|calcium/calmodulin dependent serine protein kinase [Source:RGD Symbol%3BAcc:62004]
rn6_v1_chr2_-_39007976_39007976	0.0223824	Nkx3-1	ENSRNOT00000064292|Zswim6|ENSRNOG00000014528|zinc finger%2C SWIM-type containing 6 [Source:RGD Symbol%3BAcc:1306624]
rn6_v1_chr14_+_81858737_81858743	0.0220964	Nkx3-1	ENSRNOT00000029784|Poln|ENSRNOG00000027929|DNA polymerase nu [Source:RGD Symbol%3BAcc:7675413]	ENSRNOT00000058068|Poln|ENSRNOG00000027929|DNA polymerase nu [Source:RGD Symbol%3BAcc:7675413]	ENSRNOT00000058067|Poln|ENSRNOG00000027929|DNA polymerase nu [Source:RGD Symbol%3BAcc:7675413]
rn6_v1_chr8_-_78397123_78397210	0.0220885	Nkx3-1	ENSRNOT00000087270|Tcf12|ENSRNOG00000057754|transcription factor 12 [Source:RGD Symbol%3BAcc:3829]	ENSRNOT00000084925|Tcf12|ENSRNOG00000057754|transcription factor 12 [Source:RGD Symbol%3BAcc:3829]
rn6_v1_chr5_+_104394119_104394119	0.0219868	Nkx3-1	ENSRNOT00000093557|Adamtsl1|ENSRNOG00000006956|ADAMTS-like 1 [Source:RGD Symbol%3BAcc:1306439]	ENSRNOT00000093462|Adamtsl1|ENSRNOG00000006956|ADAMTS-like 1 [Source:RGD Symbol%3BAcc:1306439]
rn6_v1_chr6_-_42302254_42302254	0.0213207	Nkx3-1	ENSRNOT00000007071|Pqlc3|ENSRNOG00000005126|PQ loop repeat containing 3 [Source:RGD Symbol%3BAcc:1306818]
rn6_v1_chr17_-_58301260_58301260	0.021005	Nkx3-1	ENSRNOT00000083331|Adarb2|ENSRNOG00000030775|adenosine deaminase%2C RNA-specific%2C B2 [Source:RGD Symbol%3BAcc:621519]
rn6_v1_chr10_-_70181708_70181708	0.0209053	Nkx3-1	ENSRNOT00000076598|Rffl|ENSRNOG00000007596|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:727916]
rn6_v1_chr14_+_48726045_48726045	0.0208606	Nkx3-1	ENSRNOT00000086646|Arap2|ENSRNOG00000056826|ArfGAP with RhoGAP domain%2C ankyrin repeat and PH domain 2 [Source:RGD Symbol%3BAcc:1306452]
rn6_v1_chr1_-_73399579_73399579	0.0204387	Nkx3-1	ENSRNOT00000077186|Lilrb4|ENSRNOG00000027811|leukocyte immunoglobulin like receptor B4 [Source:RGD Symbol%3BAcc:1359090]
rn6_v1_chr8_+_116826680_116826680	0.0203955	Nkx3-1	ENSRNOT00000026854|Gmppb|ENSRNOG00000037229|GDP-mannose pyrophosphorylase B [Source:RGD Symbol%3BAcc:1560458]
rn6_v1_chr3_-_111266542_111266542	0.0203918	Nkx3-1	ENSRNOT00000031672|Ino80|ENSRNOG00000014483|INO80 complex subunit [Source:RGD Symbol%3BAcc:1310969]
rn6_v1_chr1_+_253221812_253221813	0.0202903	Nkx3-1	ENSRNOT00000085880|Kif20b|ENSRNOG00000018929|kinesin family member 20B [Source:RGD Symbol%3BAcc:1308497]	ENSRNOT00000054753|Kif20b|ENSRNOG00000018929|kinesin family member 20B [Source:RGD Symbol%3BAcc:1308497]
rn6_v1_chr11_+_42936028_42936028	0.0200415	Nkx3-1	ENSRNOT00000074653|AABR07033887.1|ENSRNOG00000045728|
rn6_v1_chr7_+_74350479_74350479	0.0199115	Nkx3-1	ENSRNOT00000089034|AABR07057495.1|ENSRNOG00000058166|
rn6_v1_chr10_-_70681672_70681672	0.0196838	Nkx3-1	ENSRNOT00000013836|Mmp28|ENSRNOG00000047940|matrix metallopeptidase 28 [Source:RGD Symbol%3BAcc:1311573]
rn6_v1_chr14_+_66631690_66631690	0.0195419	Nkx3-1	ENSRNOT00000079658|Kcnip4|ENSRNOG00000032350|potassium voltage-gated channel interacting protein 4 [Source:RGD Symbol%3BAcc:708539]
rn6_v1_chr18_+_30820321_30820321	0.0192517	Nkx3-1	ENSRNOT00000060472|Pcdhga3|ENSRNOG00000039461|protocadherin gamma subfamily A%2C 3 [Source:RGD Symbol%3BAcc:1598664]
rn6_v1_chr8_+_111210811_111210811	0.0191393	Nkx3-1	ENSRNOT00000011347|Amotl2|ENSRNOG00000008487|angiomotin like 2 [Source:RGD Symbol%3BAcc:70977]
rn6_v1_chr6_+_110410141_110410141	0.0188454	Nkx3-1	ENSRNOT00000013867|Esrrb|ENSRNOG00000010259|estrogen-related receptor beta [Source:RGD Symbol%3BAcc:1359557]
rn6_v1_chr8_-_63750531_63750531	0.018752	Nkx3-1	ENSRNOT00000009496|Neo1|ENSRNOG00000006490|neogenin 1 [Source:RGD Symbol%3BAcc:619837]
rn6_v1_chr10_-_65502936_65502936	0.0187419	Nkx3-1	ENSRNOT00000089615|Supt6h|ENSRNOG00000012240|SPT6 homolog%2C histone chaperone [Source:RGD Symbol%3BAcc:1309290]
rn6_v1_chr4_-_16669368_16669368	0.0185222	Nkx3-1	ENSRNOT00000007608|Pclo|ENSRNOG00000005726|piccolo (presynaptic cytomatrix protein) [Source:RGD Symbol%3BAcc:69406]
rn6_v1_chr4_+_142780987_142780987	0.0183704	Nkx3-1	ENSRNOT00000056570|Grm7|ENSRNOG00000005662|glutamate metabotropic receptor 7 [Source:RGD Symbol%3BAcc:619857]
rn6_v1_chr2_-_184951950_184951950	0.0183304	Nkx3-1	ENSRNOT00000093486|Fam160a1|ENSRNOG00000048256|family with sequence similarity 160%2C member A1 [Source:RGD Symbol%3BAcc:1565007]
rn6_v1_chr5_-_134776247_134776247	0.0182508	Nkx3-1	ENSRNOT00000057055|Dmbx1|ENSRNOG00000010835|diencephalon/mesencephalon homeobox 1 [Source:RGD Symbol%3BAcc:1308265]
rn6_v1_chr2_-_203413124_203413125	0.0182275	Nkx3-1	ENSRNOT00000077898|Cd101|ENSRNOG00000037190|CD101 molecule [Source:RGD Symbol%3BAcc:1311453]	ENSRNOT00000056140|Cd101|ENSRNOG00000037190|CD101 molecule [Source:RGD Symbol%3BAcc:1311453]
rn6_v1_chr6_-_2316717_2316722	0.0181732	Nkx3-1	ENSRNOT00000082017|Cyp1b1|ENSRNOG00000040287|cytochrome P450%2C family 1%2C subfamily b%2C polypeptide 1 [Source:RGD Symbol%3BAcc:2460]	ENSRNOT00000066363|Cyp1b1|ENSRNOG00000040287|cytochrome P450%2C family 1%2C subfamily b%2C polypeptide 1 [Source:RGD Symbol%3BAcc:2460]
rn6_v1_chr1_+_84758233_84758233	0.0181392	Nkx3-1	ENSRNOT00000072734|AABR07002775.1|ENSRNOG00000048489|
rn6_v1_chr1_+_30863217_30863217	0.0179747	Nkx3-1	ENSRNOT00000015421|Rnf146|ENSRNOG00000011588|ring finger protein 146 [Source:RGD Symbol%3BAcc:1306482]
rn6_v1_chr6_+_102477036_102477036	0.0176866	Nkx3-1	ENSRNOT00000087132|Rad51b|ENSRNOG00000059245|RAD51 paralog B [Source:MGI Symbol%3BAcc:MGI:1099436]
rn6_v1_chrX_+_113510621_113510621	0.0176726	Nkx3-1	ENSRNOT00000025912|Nxt2|ENSRNOG00000019168|nuclear transport factor 2-like export factor 2 [Source:RGD Symbol%3BAcc:1560204]
rn6_v1_chrX_-_158261717_158261717	0.0176615	Nkx3-1	ENSRNOT00000086804|RGD1561558|ENSRNOG00000053609|similar to RIKEN cDNA 1700001F22 [Source:RGD Symbol%3BAcc:1561558]
rn6_v1_chr14_+_3204390_3204390	0.0174078	Nkx3-1	ENSRNOT00000088078|Glmn|ENSRNOG00000002054|glomulin%2C FKBP associated protein [Source:RGD Symbol%3BAcc:1588600]
rn6_v1_chr13_-_95348913_95348913	0.017341	Nkx3-1	ENSRNOT00000057879|Akt3|ENSRNOG00000021497|AKT serine/threonine kinase 3 [Source:RGD Symbol%3BAcc:62390]
rn6_v1_chr2_-_165591110_165591110	0.0173145	Nkx3-1	ENSRNOT00000091140|Ift80|ENSRNOG00000009808|intraflagellar transport 80 [Source:RGD Symbol%3BAcc:1312006]
rn6_v1_chr8_-_39201588_39201588	0.017265	Nkx3-1	ENSRNOT00000011226|Stt3a|ENSRNOG00000031896|STT3A%2C catalytic subunit of the oligosaccharyltransferase complex [Source:RGD Symbol%3BAcc:1565793]
rn6_v1_chr8_+_117600749_117600749	0.0171161	Nkx3-1	ENSRNOT00000047482|Nckipsd|ENSRNOG00000031816|NCK interacting protein with SH3 domain [Source:RGD Symbol%3BAcc:1311323]
rn6_v1_chr1_+_255564409_255564409	0.0168797	Nkx3-1	ENSRNOT00000081786|Btaf1|ENSRNOG00000017938|B-TFIID TATA-box binding protein associated factor 1 [Source:RGD Symbol%3BAcc:1564130]
rn6_v1_chr4_+_22898527_22898527	0.0166732	Nkx3-1	ENSRNOT00000072455|Dbf4|ENSRNOG00000050482|DBF4 zinc finger [Source:RGD Symbol%3BAcc:1305854]	ENSRNOT00000076123|Dbf4|ENSRNOG00000050482|DBF4 zinc finger [Source:RGD Symbol%3BAcc:1305854]
rn6_v1_chr19_+_38162515_38162515	0.0164818	Nkx3-1	ENSRNOT00000027117|Slc7a6|ENSRNOG00000019943|solute carrier family 7 member 6 [Source:RGD Symbol%3BAcc:1309193]
rn6_v1_chr3_-_21609853_21609853	0.0157019	Nkx3-1	ENSRNOT00000012160|Pdcl|ENSRNOG00000008484|phosducin-like [Source:RGD Symbol%3BAcc:621135]
rn6_v1_chr13_-_15395617_15395617	0.0155666	Nkx3-1	ENSRNOT00000046060|LOC304725|ENSRNOG00000029556|similar to contactin associated protein-like 5 isoform 1 [Source:RGD Symbol%3BAcc:1592077]
rn6_v1_chr9_-_23352668_23352668	0.0153365	Nkx3-1	ENSRNOT00000075279|Mut|ENSRNOG00000050843|methylmalonyl CoA mutase [Source:RGD Symbol%3BAcc:1587662]
rn6_v1_chrM_+_9870_9870	0.0153349	Nkx3-1	ENSRNOT00000044582|Mt-nd4l|ENSRNOG00000031053|mitochondrially encoded NADH 4L dehydrogenase [Source:RGD Symbol%3BAcc:620494]
rn6_v1_chr4_+_117743710_117743710	0.0152338	Nkx3-1	ENSRNOT00000021491|Add2|ENSRNOG00000015903|adducin 2 [Source:RGD Symbol%3BAcc:2042]
rn6_v1_chrX_+_157759624_157759624	0.0151974	Nkx3-1	ENSRNOT00000003192|LOC686087|ENSRNOG00000002332|similar to motile sperm domain containing 1 [Source:RGD Symbol%3BAcc:1586609]
rn6_v1_chr12_+_12859661_12859661	0.0150128	Nkx3-1	ENSRNOT00000001404|Usp42|ENSRNOG00000001059|ubiquitin specific peptidase 42 [Source:RGD Symbol%3BAcc:1305231]
rn6_v1_chr8_+_111209908_111209908	0.0146341	Nkx3-1	ENSRNOT00000090221|Amotl2|ENSRNOG00000008487|angiomotin like 2 [Source:RGD Symbol%3BAcc:70977]
rn6_v1_chr18_+_3163214_3163214	0.0145336	Nkx3-1	ENSRNOT00000017291|Rbbp8|ENSRNOG00000012899|RB binding protein 8%2C endonuclease [Source:RGD Symbol%3BAcc:1308872]
rn6_v1_chr12_+_2140203_2140203	0.0144138	Nkx3-1	ENSRNOT00000084906|Camsap3|ENSRNOG00000000986|calmodulin regulated spectrin-associated protein family%2C member 3 [Source:RGD Symbol%3BAcc:1597412]
rn6_v1_chr15_-_33285779_33285779	0.0143902	Nkx3-1	ENSRNOT00000036150|Cdh24|ENSRNOG00000013503|cadherin 24 [Source:RGD Symbol%3BAcc:1560161]
rn6_v1_chr8_-_49269411_49269411	0.0143094	Nkx3-1	ENSRNOT00000021321|Ube4a|ENSRNOG00000026833|ubiquitination factor E4A [Source:RGD Symbol%3BAcc:1303173]
rn6_v1_chr7_-_68523364_68523364	0.0141317	Nkx3-1	ENSRNOT00000077670|Slc16a7|ENSRNOG00000007839|solute carrier family 16 member 7 [Source:RGD Symbol%3BAcc:3691]
rn6_v1_chr1_-_126211439_126211439	0.0140069	Nkx3-1	ENSRNOT00000014988|Tjp1|ENSRNOG00000011077|tight junction protein 1 [Source:RGD Symbol%3BAcc:1306305]
rn6_v1_chr4_+_70572942_70572942	0.0139454	Nkx3-1	ENSRNOT00000051964|AC142181.1|ENSRNOG00000033815|
rn6_v1_chr1_-_67065797_67065797	0.0134334	Nkx3-1	ENSRNOT00000048152|Vom1r46|ENSRNOG00000032817|vomeronasal 1 receptor 46 [Source:RGD Symbol%3BAcc:1359306]
rn6_v1_chr2_-_220535751_220535751	0.0132305	Nkx3-1	ENSRNOT00000089082|Palmd|ENSRNOG00000058609|palmdelphin [Source:MGI Symbol%3BAcc:MGI:2148896]
rn6_v1_chr6_-_27460038_27460038	0.0132255	Nkx3-1	ENSRNOT00000036815|Drc1|ENSRNOG00000024905|dynein regulatory complex subunit 1 [Source:RGD Symbol%3BAcc:1359318]
rn6_v1_chr2_+_53109684_53109684	0.0130545	Nkx3-1	ENSRNOT00000086590|Selenop|ENSRNOG00000053086|selenoprotein P [Source:RGD Symbol%3BAcc:3660]
rn6_v1_chrX_+_68627313_68627329	0.0130025	Nkx3-1	ENSRNOT00000076699|Yipf6|ENSRNOG00000006642|Yip1 domain family%2C member 6 [Source:RGD Symbol%3BAcc:1566154]	ENSRNOT00000076795|Yipf6|ENSRNOG00000006642|Yip1 domain family%2C member 6 [Source:RGD Symbol%3BAcc:1566154]	ENSRNOT00000008705|Yipf6|ENSRNOG00000006642|Yip1 domain family%2C member 6 [Source:RGD Symbol%3BAcc:1566154]
rn6_v1_chr1_+_85162452_85162452	0.0126084	Nkx3-1	ENSRNOT00000093347|Pak4|ENSRNOG00000019883|p21 (RAC1) activated kinase 4 [Source:RGD Symbol%3BAcc:1307705]
rn6_v1_chr10_-_31419235_31419235	0.0125695	Nkx3-1	ENSRNOT00000059496|Cyfip2|ENSRNOG00000006557|cytoplasmic FMR1 interacting protein 2 [Source:RGD Symbol%3BAcc:1305048]
rn6_v1_chr17_+_22620721_22620721	0.0122809	Nkx3-1	ENSRNOT00000019478|Adtrp|ENSRNOG00000014481|androgen-dependent TFPI-regulating protein [Source:RGD Symbol%3BAcc:1305679]
rn6_v1_chr1_+_41590494_41590494	0.0121821	Nkx3-1	ENSRNOT00000089984|Esr1|ENSRNOG00000019358|estrogen receptor 1 [Source:RGD Symbol%3BAcc:2581]
rn6_v1_chr2_+_127625683_127625683	0.0121484	Nkx3-1	ENSRNOT00000015474|Hspa4l|ENSRNOG00000010819|heat shock protein 4-like [Source:RGD Symbol%3BAcc:1306528]
rn6_v1_chr16_-_54137660_54137660	0.0121052	Nkx3-1	ENSRNOT00000085435|Pcm1|ENSRNOG00000010155|pericentriolar material 1 [Source:RGD Symbol%3BAcc:620901]
rn6_v1_chr10_+_70520206_70520279	0.0120117	Nkx3-1	ENSRNOT00000088198|Ap2b1|ENSRNOG00000061543|adaptor-related protein complex 2%2C beta 1 subunit [Source:RGD Symbol%3BAcc:71048]	ENSRNOT00000090446|Ap2b1|ENSRNOG00000061543|adaptor-related protein complex 2%2C beta 1 subunit [Source:RGD Symbol%3BAcc:71048]	ENSRNOT00000085799|Ap2b1|ENSRNOG00000061543|adaptor-related protein complex 2%2C beta 1 subunit [Source:RGD Symbol%3BAcc:71048]
rn6_v1_chr8_-_27852996_27852996	0.0119768	Nkx3-1	ENSRNOT00000037790|Glb1l2|ENSRNOG00000007561|galactosidase%2C beta 1-like 2 [Source:RGD Symbol%3BAcc:1564436]
rn6_v1_chr19_+_37990374_37990374	0.0115537	Nkx3-1	ENSRNOT00000026827|Dus2|ENSRNOG00000019819|dihydrouridine synthase 2 [Source:RGD Symbol%3BAcc:1305612]
rn6_v1_chr1_-_255976425_255976425	0.011265	Nkx3-1	ENSRNOT00000085303|Ide|ENSRNOG00000016833|insulin degrading enzyme [Source:RGD Symbol%3BAcc:2861]
rn6_v1_chr2_-_211715311_211715311	0.0110774	Nkx3-1	ENSRNOT00000027738|Prpf38b|ENSRNOG00000020438|pre-mRNA processing factor 38B [Source:RGD Symbol%3BAcc:1562940]
rn6_v1_chr12_+_10577068_10577068	0.0108189	Nkx3-1	ENSRNOT00000001282|Rnf6|ENSRNOG00000000968|ring finger protein 6 [Source:RGD Symbol%3BAcc:1306092]
rn6_v1_chr10_+_90985653_90985653	0.0106036	Nkx3-1	ENSRNOT00000093364|Ccdc103|ENSRNOG00000002905|coiled-coil domain containing 103 [Source:RGD Symbol%3BAcc:1562370]
rn6_v1_chr3_-_105470475_105470475	0.0105706	Nkx3-1	ENSRNOT00000011078|Gjd2|ENSRNOG00000008337|gap junction protein%2C delta 2 [Source:RGD Symbol%3BAcc:2694]
rn6_v1_chr11_+_20474483_20474483	0.0101678	Nkx3-1	ENSRNOT00000082417|Ncam2|ENSRNOG00000002126|neural cell adhesion molecule 2 [Source:RGD Symbol%3BAcc:1303131]	ENSRNOT00000002895|Ncam2|ENSRNOG00000002126|neural cell adhesion molecule 2 [Source:RGD Symbol%3BAcc:1303131]
rn6_v1_chrX_+_29504349_29504349	0.0100853	Nkx3-1	ENSRNOT00000005981|Tceanc|ENSRNOG00000004531|transcription elongation factor A N-terminal and central domain containing [Source:RGD Symbol%3BAcc:1584894]
rn6_v1_chrX_-_64726210_64726241	0.00939639	Nkx3-1	ENSRNOT00000076012|Asb12|ENSRNOG00000004197|ankyrin repeat and SOCS box-containing 12 [Source:RGD Symbol%3BAcc:1561142]	ENSRNOT00000086265|Asb12|ENSRNOG00000004197|ankyrin repeat and SOCS box-containing 12 [Source:RGD Symbol%3BAcc:1561142]
rn6_v1_chr8_+_103342929_103342929	0.00931758	Nkx3-1	ENSRNOT00000045455|LOC501038|ENSRNOG00000033654|Ab2-060 [Source:RGD Symbol%3BAcc:1560610]
rn6_v1_chr13_-_47623849_47623849	0.00926237	Nkx3-1	ENSRNOT00000006106|Il24|ENSRNOG00000004470|interleukin 24 [Source:RGD Symbol%3BAcc:621484]
rn6_v1_chr4_-_140220487_140220487	0.00918367	Nkx3-1	ENSRNOT00000009008|Sumf1|ENSRNOG00000006813|sulfatase modifying factor 1 [Source:RGD Symbol%3BAcc:1309939]
rn6_v1_chr14_-_45859908_45859908	0.0090929	Nkx3-1	ENSRNOT00000086994|Pgm2|ENSRNOG00000002185|phosphoglucomutase 2 [Source:RGD Symbol%3BAcc:1306061]
rn6_v1_chr18_+_15738809_15738809	0.00877166	Nkx3-1	ENSRNOT00000075444|Mapre2|ENSRNOG00000049681|microtubule-associated protein%2C RP/EB family%2C member 2 [Source:RGD Symbol%3BAcc:1590736]
rn6_v1_chr10_+_67810810_67810810	0.00865666	Nkx3-1	ENSRNOT00000079156|Psmd11|ENSRNOG00000005538|proteasome 26S subunit%2C non-ATPase 11 [Source:RGD Symbol%3BAcc:1306450]
rn6_v1_chr20_-_27117663_27117663	0.00833325	Nkx3-1	ENSRNOT00000000434|Pbld1|ENSRNOG00000000386|phenazine biosynthesis-like protein domain containing 1 [Source:RGD Symbol%3BAcc:621263]
rn6_v1_chr5_-_150949931_150949931	0.00828839	Nkx3-1	ENSRNOT00000067905|Smpdl3b|ENSRNOG00000042326|sphingomyelin phosphodiesterase%2C acid-like 3B [Source:RGD Symbol%3BAcc:1307458]
rn6_v1_chr11_-_27094364_27094364	0.00816471	Nkx3-1	ENSRNOT00000050902|Rwdd2b|ENSRNOG00000001599|RWD domain containing 2B [Source:RGD Symbol%3BAcc:1305062]
rn6_v1_chr20_+_3246739_3246739	0.00793565	Nkx3-1	ENSRNOT00000061299|RT1-T24-2|ENSRNOG00000000787|RT1 class I%2C locus T24%2C gene 2 [Source:RGD Symbol%3BAcc:1303033]
rn6_v1_chr16_-_54137485_54137485	0.00757557	Nkx3-1	ENSRNOT00000014202|Pcm1|ENSRNOG00000010155|pericentriolar material 1 [Source:RGD Symbol%3BAcc:620901]
rn6_v1_chr5_-_115184219_115184219	0.00735502	Nkx3-1	ENSRNOT00000045686|LOC100912642|ENSRNOG00000042224|cytochrome P450 2J3-like [Source:RGD Symbol%3BAcc:6486125]
rn6_v1_chr1_-_198354466_198354466	0.00726605	Nkx3-1	ENSRNOT00000027094|Tmem219|ENSRNOG00000020000|transmembrane protein 219 [Source:RGD Symbol%3BAcc:1560566]
rn6_v1_chr13_+_73708815_73708815	0.00716937	Nkx3-1	ENSRNOT00000071482|Tor1aip2|ENSRNOG00000048267|torsin 1A interacting protein 2 [Source:RGD Symbol%3BAcc:735059]	ENSRNOT00000077874|Tor1aip2|ENSRNOG00000048267|torsin 1A interacting protein 2 [Source:RGD Symbol%3BAcc:735059]	ENSRNOT00000050734|Tor1aip2|ENSRNOG00000024849|torsin 1A interacting protein 2 [Source:RGD Symbol%3BAcc:735059]
rn6_v1_chr18_-_81682206_81682206	0.00708604	Nkx3-1	ENSRNOT00000058219|LOC100359752|ENSRNOG00000038241|hypothetical protein LOC100359752 [Source:RGD Symbol%3BAcc:2323488]
rn6_v1_chr1_-_277867630_277867668	0.00707262	Nkx3-1	ENSRNOT00000054679|Ablim1|ENSRNOG00000046333|actin-binding LIM protein 1 [Source:RGD Symbol%3BAcc:1565768]	ENSRNOT00000091038|Ablim1|ENSRNOG00000046333|actin-binding LIM protein 1 [Source:RGD Symbol%3BAcc:1565768]	ENSRNOT00000079869|Ablim1|ENSRNOG00000046333|actin-binding LIM protein 1 [Source:RGD Symbol%3BAcc:1565768]
rn6_v1_chr19_+_43392085_43392085	0.00704361	Nkx3-1	ENSRNOT00000023854|Sf3b3|ENSRNOG00000017724|splicing factor 3b%2C subunit 3 [Source:RGD Symbol%3BAcc:1311636]
rn6_v1_chr8_-_132911193_132911193	0.00704361	Nkx3-1	ENSRNOT00000087799|Fyco1|ENSRNOG00000006336|FYVE and coiled-coil domain containing 1 [Source:RGD Symbol%3BAcc:1309069]
rn6_v1_chr1_-_66639205_66639205	0.00701841	Nkx3-1	ENSRNOT00000082190|LOC100909481|ENSRNOG00000055247|eukaryotic translation initiation factor 3 subunit E-like [Source:RGD Symbol%3BAcc:6503216]
rn6_v1_chr9_-_15700235_15700312	0.00697583	Nkx3-1	ENSRNOT00000088713|Trerf1|ENSRNOG00000022598|transcriptional regulating factor 1 [Source:RGD Symbol%3BAcc:1307167]	ENSRNOT00000035907|Trerf1|ENSRNOG00000022598|transcriptional regulating factor 1 [Source:RGD Symbol%3BAcc:1307167]
rn6_v1_chr1_+_7252349_7252349	0.00695246	Nkx3-1	ENSRNOT00000030329|Plagl1|ENSRNOG00000025587|PLAG1 like zinc finger 1 [Source:RGD Symbol%3BAcc:3014]
rn6_v1_chr9_-_27761365_27761365	0.00685147	Nkx3-1	ENSRNOT00000018552|Kcnq5|ENSRNOG00000013781|potassium voltage-gated channel subfamily Q member 5 [Source:RGD Symbol%3BAcc:628848]
rn6_v1_chr10_+_51478378_51478378	0.00679096	Nkx3-1	ENSRNOT00000004722|Elac2|ENSRNOG00000003424|elaC ribonuclease Z 2 [Source:RGD Symbol%3BAcc:628882]
rn6_v1_chr18_+_56887722_56887722	0.00672751	Nkx3-1	ENSRNOT00000078783|Csnk1a1|ENSRNOG00000017106|casein kinase 1%2C alpha 1 [Source:RGD Symbol%3BAcc:71098]
rn6_v1_chr10_+_104377748_104377748	0.00663213	Nkx3-1	ENSRNOT00000080714|Llgl2|ENSRNOG00000004834|LLGL2%2C scribble cell polarity complex component [Source:RGD Symbol%3BAcc:1560307]
rn6_v1_chr10_+_17579284_17579284	0.00662536	Nkx3-1	ENSRNOT00000079698|Fbxw11|ENSRNOG00000004395|F-box and WD repeat domain containing 11 [Source:RGD Symbol%3BAcc:1309121]
rn6_v1_chr6_-_92398525_92398525	0.00605594	Nkx3-1	ENSRNOT00000007314|Sav1|ENSRNOG00000005264|salvador family WW domain containing protein 1 [Source:RGD Symbol%3BAcc:1307253]
rn6_v1_chr2_-_60461458_60461458	0.00585638	Nkx3-1	ENSRNOT00000024285|Brix1|ENSRNOG00000018021|BRX1%2C biogenesis of ribosomes [Source:RGD Symbol%3BAcc:1308508]
rn6_v1_chr4_+_342302_342302	0.00572431	Nkx3-1	ENSRNOT00000009233|Insig1|ENSRNOG00000006859|insulin induced gene 1 [Source:RGD Symbol%3BAcc:708457]
rn6_v1_chr10_+_72147816_72147816	0.0056546	Nkx3-1	ENSRNOT00000090085|LOC102553386|ENSRNOG00000053557|SUMO-conjugating enzyme UBC9-like [Source:RGD Symbol%3BAcc:7518044]
rn6_v1_chr8_+_13305152_13305152	0.00550964	Nkx3-1	ENSRNOT00000012940|Mre11a|ENSRNOG00000009506|MRE11 homolog A%2C double strand break repair nuclease [Source:RGD Symbol%3BAcc:69263]
rn6_v1_chr2_+_104020955_104020955	0.00546804	Nkx3-1	ENSRNOT00000045586|Mtfr1|ENSRNOG00000021359|mitochondrial fission regulator 1 [Source:RGD Symbol%3BAcc:1304936]
rn6_v1_chr10_+_109851854_109851854	0.00544427	Nkx3-1	ENSRNOT00000087005|Aspscr1|ENSRNOG00000036678|ASPSCR1%2C UBX domain containing tether for SLC2A4 [Source:RGD Symbol%3BAcc:1588666]
rn6_v1_chr2_+_17616401_17616401	0.00538188	Nkx3-1	ENSRNOT00000064991|Edil3|ENSRNOG00000033064|EGF like repeats and discoidin domains 3 [Source:RGD Symbol%3BAcc:1588887]
rn6_v1_chr3_-_48535909_48535909	0.0053467	Nkx3-1	ENSRNOT00000008148|Fap|ENSRNOG00000005679|fibroblast activation protein%2C alpha [Source:RGD Symbol%3BAcc:621253]
rn6_v1_chr10_+_83556809_83556809	0.00503929	Nkx3-1	ENSRNOT00000022811|Zfp652|ENSRNOG00000017001|zinc finger protein 652 [Source:RGD Symbol%3BAcc:1566329]
rn6_v1_chr18_-_74478341_74478341	0.00495061	Nkx3-1	ENSRNOT00000074572|Slc14a1|ENSRNOG00000016753|solute carrier family 14 member 1 [Source:RGD Symbol%3BAcc:3688]
rn6_v1_chr3_-_160561741_160561741	0.00486744	Nkx3-1	ENSRNOT00000018364|Kcns1|ENSRNOG00000013681|potassium voltage-gated channel%2C modifier subfamily S%2C member 1 [Source:RGD Symbol%3BAcc:621524]
rn6_v1_chr4_-_6062641_6062641	0.00473991	Nkx3-1	ENSRNOT00000074846|Cct8l1|ENSRNOG00000047114|chaperonin containing TCP1%2C subunit 8 (theta)-like 1 [Source:RGD Symbol%3BAcc:1561536]
rn6_v1_chr3_-_123607352_123607352	0.00449722	Nkx3-1	ENSRNOT00000051404|Adam33|ENSRNOG00000021242|ADAM metallopeptidase domain 33 [Source:RGD Symbol%3BAcc:1305278]	ENSRNOT00000028854|Adam33|ENSRNOG00000021242|ADAM metallopeptidase domain 33 [Source:RGD Symbol%3BAcc:1305278]
rn6_v1_chr18_+_56887354_56887496	0.00446976	Nkx3-1	ENSRNOT00000044346|Csnk1a1|ENSRNOG00000017106|casein kinase 1%2C alpha 1 [Source:RGD Symbol%3BAcc:71098]	ENSRNOT00000066133|Csnk1a1|ENSRNOG00000017106|casein kinase 1%2C alpha 1 [Source:RGD Symbol%3BAcc:71098]
rn6_v1_chr20_-_3819200_3819235	0.0044235	Nkx3-1	ENSRNOT00000000542|Hsd17b8|ENSRNOG00000000466|hydroxysteroid (17-beta) dehydrogenase 8 [Source:RGD Symbol%3BAcc:1303158]	ENSRNOT00000081486|Hsd17b8|ENSRNOG00000000466|hydroxysteroid (17-beta) dehydrogenase 8 [Source:RGD Symbol%3BAcc:1303158]
rn6_v1_chr19_-_37440471_37440471	0.00409571	Nkx3-1	ENSRNOT00000066636|Zdhhc1|ENSRNOG00000017045|zinc finger%2C DHHC-type containing 1 [Source:RGD Symbol%3BAcc:1589775]
rn6_v1_chr10_+_65161152_65161152	0.00408566	Nkx3-1	ENSRNOT00000011608|Cryba1|ENSRNOG00000008700|crystallin%2C beta A1 [Source:RGD Symbol%3BAcc:2415]
rn6_v1_chr3_-_147188929_147188929	0.00395255	Nkx3-1	ENSRNOT00000055455|Rad21l1|ENSRNOG00000022335|RAD21 cohesin complex component like 1 [Source:RGD Symbol%3BAcc:1587557]
rn6_v1_chr2_+_266317745_266317745	0.0039224	Nkx3-1	ENSRNOT00000080305|Wls|ENSRNOG00000036816|wntless Wnt ligand secretion mediator [Source:RGD Symbol%3BAcc:735139]
rn6_v1_chr5_+_173237642_173237642	0.00378569	Nkx3-1	ENSRNOT00000068770|Ankrd65|ENSRNOG00000043331|ankyrin repeat domain 65 [Source:RGD Symbol%3BAcc:1588232]
rn6_v1_chr2_-_210839295_210839295	0.00376299	Nkx3-1	ENSRNOT00000025994|Gstm4|ENSRNOG00000019221|glutathione S-transferase mu 4 [Source:RGD Symbol%3BAcc:1565825]
rn6_v1_chr4_+_117744075_117744075	0.00359425	Nkx3-1	ENSRNOT00000081173|Add2|ENSRNOG00000015903|adducin 2 [Source:RGD Symbol%3BAcc:2042]
rn6_v1_chr6_+_97168453_97168453	0.00357258	Nkx3-1	ENSRNOT00000085790|Syt16|ENSRNOG00000056012|synaptotagmin 16 [Source:RGD Symbol%3BAcc:1564654]
rn6_v1_chr17_+_45467015_45467015	0.00318004	Nkx3-1	ENSRNOT00000081408|Gpx5|ENSRNOG00000057180|glutathione peroxidase 5 [Source:RGD Symbol%3BAcc:69227]
rn6_v1_chr3_+_146695344_146695344	0.00282023	Nkx3-1	ENSRNOT00000010955|Gins1|ENSRNOG00000008091|GINS complex subunit 1 [Source:RGD Symbol%3BAcc:1562246]
rn6_v1_chr6_+_125876109_125876109	0.00277372	Nkx3-1	ENSRNOT00000091300|Cpsf2|ENSRNOG00000005733|cleavage and polyadenylation specific factor 2 [Source:RGD Symbol%3BAcc:1309687]
rn6_v1_chr1_+_101554642_101554642	0.00271618	Nkx3-1	ENSRNOT00000028474|Bcat2|ENSRNOG00000020956|branched chain amino acid transaminase 2 [Source:RGD Symbol%3BAcc:68948]
rn6_v1_chr10_+_29067102_29067102	0.00267891	Nkx3-1	ENSRNOT00000005161|C1qtnf2|ENSRNOG00000003870|C1q and tumor necrosis factor related protein 2 [Source:RGD Symbol%3BAcc:1561041]
rn6_v1_chr5_-_133067245_133067245	0.00265219	Nkx3-1	ENSRNOT00000033163|Skint10|ENSRNOG00000022988|selection and upkeep of intraepithelial T cells 10 [Source:RGD Symbol%3BAcc:1587504]
rn6_v1_chr14_+_36216002_36216002	0.00256059	Nkx3-1	ENSRNOT00000038506|Scfd2|ENSRNOG00000026828|sec1 family domain containing 2 [Source:RGD Symbol%3BAcc:1562708]
rn6_v1_chr1_+_169590308_169590308	0.00234683	Nkx3-1	ENSRNOT00000023147|Olr155|ENSRNOG00000017234|olfactory receptor 155 [Source:RGD Symbol%3BAcc:1332954]
rn6_v1_chr1_-_80716143_80716146	0.00223849	Nkx3-1	ENSRNOT00000092048|Cblc|ENSRNOG00000018953|Cbl proto-oncogene C [Source:RGD Symbol%3BAcc:1307651]	ENSRNOT00000025829|Cblc|ENSRNOG00000018953|Cbl proto-oncogene C [Source:RGD Symbol%3BAcc:1307651]
rn6_v1_chr1_+_199449973_199449973	0.00182117	Nkx3-1	ENSRNOT00000029994|Trim72|ENSRNOG00000022099|tripartite motif containing 72 [Source:RGD Symbol%3BAcc:1562778]
rn6_v1_chr17_-_10439691_10439691	0.00175604	Nkx3-1	ENSRNOT00000024151|Cdhr2|ENSRNOG00000017917|cadherin-related family member 2 [Source:RGD Symbol%3BAcc:1560576]
rn6_v1_chr2_-_117666683_117666683	0.00166741	Nkx3-1	ENSRNOT00000015479|AABR07009931.1|ENSRNOG00000011640|
rn6_v1_chr7_-_117940007_117940007	0.00162975	Nkx3-1	ENSRNOT00000028184|Zfp251|ENSRNOG00000030308|zinc finger protein 251 [Source:RGD Symbol%3BAcc:1311138]
rn6_v1_chr6_-_25507073_25507073	0.00158019	Nkx3-1	ENSRNOT00000061176|Plb1|ENSRNOG00000026037|phospholipase B1 [Source:RGD Symbol%3BAcc:621565]
rn6_v1_chr16_+_20657099_20657099	0.00143892	Nkx3-1	ENSRNOT00000027053|Kxd1|ENSRNOG00000019971|KxDL motif containing 1 [Source:RGD Symbol%3BAcc:1562866]
rn6_v1_chr1_-_228014924_228014924	0.00141108	Nkx3-1	ENSRNOT00000042091|Oosp2|ENSRNOG00000036624|oocyte secreted protein 2 [Source:RGD Symbol%3BAcc:1590948]
rn6_v1_chr11_-_80936524_80936524	0.00140597	Nkx3-1	ENSRNOT00000044591|St6gal1|ENSRNOG00000001823|ST6 beta-galactoside alpha-2%2C6-sialyltransferase 1 [Source:RGD Symbol%3BAcc:3676]
rn6_v1_chr12_+_4546287_4546287	0.00139685	Nkx3-1	ENSRNOT00000001416|Higd2al1|ENSRNOG00000001071|HIG1 hypoxia inducible domain family%2C member 2A-like 1 [Source:RGD Symbol%3BAcc:1586494]
rn6_v1_chr1_+_107262659_107262659	0.00119822	Nkx3-1	ENSRNOT00000022499|Gas2|ENSRNOG00000016717|growth arrest-specific 2 [Source:RGD Symbol%3BAcc:1563167]
rn6_v1_chr3_-_114728410_114728410	0.00116684	Nkx3-1	ENSRNOT00000000181|Gatm|ENSRNOG00000000168|glycine amidinotransferase [Source:RGD Symbol%3BAcc:71090]
rn6_v1_chr4_-_6046477_6046477	0.00115076	Nkx3-1	ENSRNOT00000073925|Cct8l1|ENSRNOG00000050369|chaperonin containing TCP1%2C subunit 8 (theta)-like 1 [Source:RGD Symbol%3BAcc:1561536]
rn6_v1_chr6_+_107999846_107999846	0.000990539	Nkx3-1	ENSRNOT00000058095|Ptgr2|ENSRNOG00000038166|prostaglandin reductase 2 [Source:RGD Symbol%3BAcc:1310518]
rn6_v1_chrX_-_70461553_70461635	0.000884117	Nkx3-1	ENSRNOT00000076110|Pdzd11|ENSRNOG00000002838|PDZ domain containing 11 [Source:RGD Symbol%3BAcc:1560007]	ENSRNOT00000003872|Pdzd11|ENSRNOG00000002838|PDZ domain containing 11 [Source:RGD Symbol%3BAcc:1560007]	ENSRNOT00000076812|Pdzd11|ENSRNOG00000002838|PDZ domain containing 11 [Source:RGD Symbol%3BAcc:1560007]
rn6_v1_chrX_+_119030419_119030419	0.000405268	Nkx3-1	ENSRNOT00000060168|Pls3|ENSRNOG00000027520|plastin 3 [Source:RGD Symbol%3BAcc:621409]
rn6_v1_chr5_-_128333805_128333805	0.000103784	Nkx3-1	ENSRNOT00000037523|Zfyve9|ENSRNOG00000027183|zinc finger FYVE-type containing 9 [Source:RGD Symbol%3BAcc:1310856]
rn6_v1_chr9_-_63641400_63641400	8.44334e-05	Nkx3-1	ENSRNOT00000087684|Satb2|ENSRNOG00000010188|SATB homeobox 2 [Source:RGD Symbol%3BAcc:1562369]
