rn6_v1_chr20_+_13778178_13778178	0.0450133	Pax1_Pax9	ENSRNOT00000058314|Gstt4|ENSRNOG00000038300|glutathione S-transferase%2C theta 4 [Source:RGD Symbol%3BAcc:1591294]
rn6_v1_chr4_+_119815139_119815246	0.0302645	Pax1_Pax9	ENSRNOT00000083402|Hmces|ENSRNOG00000010474|5-hydroxymethylcytosine (hmC) binding%2C ES cell-specific [Source:RGD Symbol%3BAcc:1559800]	ENSRNOT00000016137|Hmces|ENSRNOG00000010474|5-hydroxymethylcytosine (hmC) binding%2C ES cell-specific [Source:RGD Symbol%3BAcc:1559800]
rn6_v1_chr6_+_26390689_26390764	0.0209504	Pax1_Pax9	ENSRNOT00000079762|Ift172|ENSRNOG00000057813|intraflagellar transport 172 [Source:RGD Symbol%3BAcc:620744]	ENSRNOT00000091528|Ift172|ENSRNOG00000057813|intraflagellar transport 172 [Source:RGD Symbol%3BAcc:620744]
rn6_v1_chr8_-_55276070_55276070	0.0177839	Pax1_Pax9	ENSRNOT00000041555|LOC108351703|ENSRNOG00000031736|60S ribosomal protein L27a-like [Source:RGD Symbol%3BAcc:11463616]
rn6_v1_chr3_+_147609095_147609095	0.0174159	Pax1_Pax9	ENSRNOT00000041456|Srxn1|ENSRNOG00000031167|sulfiredoxin 1 [Source:RGD Symbol%3BAcc:1307332]
rn6_v1_chr7_+_2435553_2435553	0.0136398	Pax1_Pax9	ENSRNOT00000065593|Prim1|ENSRNOG00000031993|primase (DNA) subunit 1 [Source:RGD Symbol%3BAcc:621380]
rn6_v1_chr3_-_15433252_15433252	0.0135201	Pax1_Pax9	ENSRNOT00000008817|Lhx6|ENSRNOG00000005996|LIM homeobox 6 [Source:RGD Symbol%3BAcc:1306174]
rn6_v1_chr8_+_70603249_70603249	0.0116274	Pax1_Pax9	ENSRNOT00000067016|Igdcc4|ENSRNOG00000033496|immunoglobulin superfamily%2C DCC subclass%2C member 4 [Source:RGD Symbol%3BAcc:1310919]	ENSRNOT00000072486|Igdcc4|ENSRNOG00000033496|immunoglobulin superfamily%2C DCC subclass%2C member 4 [Source:RGD Symbol%3BAcc:1310919]
rn6_v1_chr3_+_2877293_2877293	0.0115573	Pax1_Pax9	ENSRNOT00000061855|Lcn5|ENSRNOG00000058597|lipocalin 5 [Source:RGD Symbol%3BAcc:69320]
rn6_v1_chr10_-_94488180_94488180	0.0113859	Pax1_Pax9	ENSRNOT00000015818|Gh1|ENSRNOG00000011207|growth hormone 1 [Source:RGD Symbol%3BAcc:2686]
rn6_v1_chr3_+_128828331_128828331	0.010084	Pax1_Pax9	ENSRNOT00000045393|Plcb4|ENSRNOG00000033119|phospholipase C%2C beta 4 [Source:RGD Symbol%3BAcc:3345]
rn6_v1_chr1_+_126749508_126749508	0.00707502	Pax1_Pax9	ENSRNOT00000015845|Pcsk6|ENSRNOG00000011526|proprotein convertase subtilisin/kexin type 6 [Source:RGD Symbol%3BAcc:3246]
rn6_v1_chr9_-_65737538_65737538	0.00561281	Pax1_Pax9	ENSRNOT00000014939|Trak2|ENSRNOG00000010881|trafficking kinesin protein 2 [Source:RGD Symbol%3BAcc:620915]
rn6_v1_chr7_+_114724610_114724610	0.0056093	Pax1_Pax9	ENSRNOT00000014541|Dennd3|ENSRNOG00000010794|DENN domain containing 3 [Source:RGD Symbol%3BAcc:1311559]
rn6_v1_chr9_-_17880706_17880706	0.00558109	Pax1_Pax9	ENSRNOT00000031549|Aars2|ENSRNOG00000025808|alanyl-tRNA synthetase 2%2C mitochondrial [Source:RGD Symbol%3BAcc:1310617]
rn6_v1_chr20_+_7484800_7484800	0.00528451	Pax1_Pax9	ENSRNOT00000081604|Anks1a|ENSRNOG00000000498|ankyrin repeat and sterile alpha motif domain containing 1A [Source:RGD Symbol%3BAcc:1309183]
rn6_v1_chr20_+_7484550_7484550	0.00477142	Pax1_Pax9	ENSRNOT00000044395|Anks1a|ENSRNOG00000000498|ankyrin repeat and sterile alpha motif domain containing 1A [Source:RGD Symbol%3BAcc:1309183]
rn6_v1_chr16_-_24788740_24788740	0.00467769	Pax1_Pax9	ENSRNOT00000018952|Npy1r|ENSRNOG00000014149|neuropeptide Y receptor Y1 [Source:RGD Symbol%3BAcc:3198]
rn6_v1_chr12_+_37709860_37709860	0.00389696	Pax1_Pax9	ENSRNOT00000086244|Mphosph9|ENSRNOG00000001074|M-phase phosphoprotein 9 [Source:RGD Symbol%3BAcc:1598368]
rn6_v1_chr5_-_173209768_173209768	0.00325151	Pax1_Pax9	ENSRNOT00000045053|Atad3a|ENSRNOG00000018118|ATPase family%2C AAA domain containing 3A [Source:RGD Symbol%3BAcc:1305964]
rn6_v1_chr16_-_24788456_24788456	0.00311531	Pax1_Pax9	ENSRNOT00000079412|Npy1r|ENSRNOG00000014149|neuropeptide Y receptor Y1 [Source:RGD Symbol%3BAcc:3198]
rn6_v1_chrX_+_118084890_118084890	0.00304378	Pax1_Pax9	ENSRNOT00000065293|Htr2c|ENSRNOG00000030877|5-hydroxytryptamine receptor 2C [Source:RGD Symbol%3BAcc:2848]
rn6_v1_chr7_-_12634641_12634641	0.00236391	Pax1_Pax9	ENSRNOT00000093132|Cfd|ENSRNOG00000033564|complement factor D [Source:RGD Symbol%3BAcc:2498]
rn6_v1_chr1_-_220502272_220502272	0.00142556	Pax1_Pax9	ENSRNOT00000041238|Klc2|ENSRNOG00000020299|kinesin light chain 2 [Source:RGD Symbol%3BAcc:1307377]
rn6_v1_chr7_-_11319516_11319516	0.00134582	Pax1_Pax9	ENSRNOT00000027784|Apba3|ENSRNOG00000020466|amyloid beta precursor protein binding family A member 3 [Source:RGD Symbol%3BAcc:620846]
rn6_v1_chr17_+_54280851_54280851	0.00116793	Pax1_Pax9	ENSRNOT00000024022|Arhgap12|ENSRNOG00000017791|Rho GTPase activating protein 12 [Source:RGD Symbol%3BAcc:1310017]
rn6_v1_chr9_-_15628881_15629017	0.000545595	Pax1_Pax9	ENSRNOT00000077318|Guca1b|ENSRNOG00000015623|guanylate cyclase activator 1B [Source:RGD Symbol%3BAcc:1308191]	ENSRNOT00000020950|Guca1b|ENSRNOG00000015623|guanylate cyclase activator 1B [Source:RGD Symbol%3BAcc:1308191]
rn6_v1_chr18_-_1946840_1946840	0.000501909	Pax1_Pax9	ENSRNOT00000041878|Abhd3|ENSRNOG00000029370|abhydrolase domain containing 3 [Source:RGD Symbol%3BAcc:1310655]
rn6_v1_chr3_-_5802129_5802129	0.000383628	Pax1_Pax9	ENSRNOT00000009555|Sardh|ENSRNOG00000006916|sarcosine dehydrogenase [Source:RGD Symbol%3BAcc:621125]
rn6_v1_chr5_-_50068706_50068706	0.000292551	Pax1_Pax9	ENSRNOT00000084643|Orc3|ENSRNOG00000008314|origin recognition complex%2C subunit 3 [Source:RGD Symbol%3BAcc:1308457]
rn6_v1_chr9_-_53732858_53732858	0.000253426	Pax1_Pax9	ENSRNOT00000029204|Nemp2|ENSRNOG00000012924|nuclear envelope integral membrane protein 2 [Source:RGD Symbol%3BAcc:1560421]
