rn6_v1_chr3_+_79823945_79823945	0.148105	Pax4	ENSRNOT00000014484|Celf1|ENSRNOG00000010379|CUGBP%2C Elav-like family member 1 [Source:RGD Symbol%3BAcc:1307721]
rn6_v1_chr9_+_20765296_20765296	0.0938909	Pax4	ENSRNOT00000016291|Cd2ap|ENSRNOG00000011987|CD2-associated protein [Source:RGD Symbol%3BAcc:727803]
rn6_v1_chr13_-_45318822_45318878	0.0874564	Pax4	ENSRNOT00000091514|Cxcr4|ENSRNOG00000003866|C-X-C motif chemokine receptor 4 [Source:RGD Symbol%3BAcc:620465]	ENSRNOT00000005143|Cxcr4|ENSRNOG00000003866|C-X-C motif chemokine receptor 4 [Source:RGD Symbol%3BAcc:620465]
rn6_v1_chr6_-_108796124_108796124	0.081722	Pax4	ENSRNOT00000086545|Arel1|ENSRNOG00000004382|apoptosis resistant E3 ubiquitin protein ligase 1 [Source:RGD Symbol%3BAcc:1307597]
rn6_v1_chr16_-_9709347_9709347	0.0729701	Pax4	ENSRNOT00000083933|Mapk8|ENSRNOG00000020155|mitogen-activated protein kinase 8 [Source:RGD Symbol%3BAcc:621506]
rn6_v1_chr20_+_13940877_13940877	0.0707991	Pax4	ENSRNOT00000093587|Cabin1|ENSRNOG00000001237|calcineurin binding protein 1 [Source:RGD Symbol%3BAcc:620263]
rn6_v1_chr4_-_152883210_152883210	0.0702006	Pax4	ENSRNOT00000056200|Ccdc77|ENSRNOG00000037206|coiled-coil domain containing 77 [Source:RGD Symbol%3BAcc:1310710]
rn6_v1_chrX_+_128416722_128416809	0.0679189	Pax4	ENSRNOT00000009336|Xiap|ENSRNOG00000006967|X-linked inhibitor of apoptosis [Source:RGD Symbol%3BAcc:620692]	ENSRNOT00000085110|Xiap|ENSRNOG00000006967|X-linked inhibitor of apoptosis [Source:RGD Symbol%3BAcc:620692]
rn6_v1_chr3_-_148932878_148932878	0.0659862	Pax4	ENSRNOT00000013881|Nol4l|ENSRNOG00000010417|nucleolar protein 4-like [Source:RGD Symbol%3BAcc:1563510]
rn6_v1_chr18_-_74485139_74485139	0.0649965	Pax4	ENSRNOT00000022598|Slc14a1|ENSRNOG00000016753|solute carrier family 14 member 1 [Source:RGD Symbol%3BAcc:3688]
rn6_v1_chr18_-_57245666_57245666	0.0568812	Pax4	ENSRNOT00000080365|Ablim3|ENSRNOG00000019365|actin binding LIM protein family%2C member 3 [Source:RGD Symbol%3BAcc:1565118]
rn6_v1_chr3_-_71845232_71845232	0.0563775	Pax4	ENSRNOT00000078645|Calcrl|ENSRNOG00000054695|calcitonin receptor like receptor [Source:RGD Symbol%3BAcc:2255]
rn6_v1_chr13_-_80775230_80775264	0.0561283	Pax4	ENSRNOT00000091389|Fmo2|ENSRNOG00000003510|flavin containing monooxygenase 2 [Source:RGD Symbol%3BAcc:628600]	ENSRNOT00000004762|Fmo2|ENSRNOG00000003510|flavin containing monooxygenase 2 [Source:RGD Symbol%3BAcc:628600]
rn6_v1_chr8_+_70317586_70317586	0.0548969	Pax4	ENSRNOT00000016260|Dennd4a|ENSRNOG00000011739|DENN domain containing 4A [Source:RGD Symbol%3BAcc:1562639]
rn6_v1_chr2_-_22798214_22798214	0.0543957	Pax4	ENSRNOT00000016135|Papd4|ENSRNOG00000012099|poly(A) RNA polymerase D4%2C non-canonical [Source:RGD Symbol%3BAcc:1306438]
rn6_v1_chr3_-_113438801_113438801	0.0521477	Pax4	ENSRNOT00000091665|Mfap1a|ENSRNOG00000014436|microfibrillar-associated protein 1A [Source:RGD Symbol%3BAcc:1562232]
rn6_v1_chrX_-_152642531_152642531	0.0521083	Pax4	ENSRNOT00000085037|Gabra3|ENSRNOG00000056558|gamma-aminobutyric acid type A receptor alpha3 subunit [Source:RGD Symbol%3BAcc:2648]
rn6_v1_chr14_-_112946204_112946204	0.0501326	Pax4	ENSRNOT00000056813|LOC103690141|ENSRNOG00000003374|coiled-coil domain-containing protein 85A-like [Source:RGD Symbol%3BAcc:9432491]
rn6_v1_chrX_-_70428364_70428364	0.0501287	Pax4	ENSRNOT00000045907|P2ry4|ENSRNOG00000002953|pyrimidinergic receptor P2Y4 [Source:RGD Symbol%3BAcc:61798]
rn6_v1_chr14_+_8182383_8182383	0.0488842	Pax4	ENSRNOT00000092719|Mapk10|ENSRNOG00000002079|mitogen activated protein kinase 10 [Source:RGD Symbol%3BAcc:3663]
rn6_v1_chr10_+_90984227_90984266	0.0474712	Pax4	ENSRNOT00000003890|Ccdc103|ENSRNOG00000002905|coiled-coil domain containing 103 [Source:RGD Symbol%3BAcc:1562370]	ENSRNOT00000093707|Ccdc103|ENSRNOG00000002905|coiled-coil domain containing 103 [Source:RGD Symbol%3BAcc:1562370]
rn6_v1_chr1_+_264309214_264309214	0.0442631	Pax4	ENSRNOT00000019070|Hif1an|ENSRNOG00000014234|hypoxia-inducible factor 1%2C alpha subunit inhibitor [Source:RGD Symbol%3BAcc:1308281]
rn6_v1_chr3_-_66417741_66417741	0.0441123	Pax4	ENSRNOT00000007662|Neurod1|ENSRNOG00000005609|neuronal differentiation 1 [Source:RGD Symbol%3BAcc:3165]
rn6_v1_chr3_-_162579201_162579201	0.0395344	Pax4	ENSRNOT00000068328|Zmynd8|ENSRNOG00000019154|zinc finger%2C MYND-type containing 8 [Source:RGD Symbol%3BAcc:1309544]
rn6_v1_chr1_+_105285419_105285419	0.0383044	Pax4	ENSRNOT00000089693|Slc6a5|ENSRNOG00000031662|solute carrier family 6 member 5 [Source:RGD Symbol%3BAcc:621824]
rn6_v1_chrM_+_11736_11736	0.0375782	Pax4	ENSRNOT00000048767|Mt-nd5|ENSRNOG00000029971|mitochondrially encoded NADH dehydrogenase 5 [Source:RGD Symbol%3BAcc:620560]
rn6_v1_chr1_+_252894663_252894663	0.0369559	Pax4	ENSRNOT00000054757|Ifit2|ENSRNOG00000036604|interferon-induced protein with tetratricopeptide repeats 2 [Source:RGD Symbol%3BAcc:1307804]
rn6_v1_chr14_+_39663421_39663421	0.0364147	Pax4	ENSRNOT00000003197|Gabra2|ENSRNOG00000002349|gamma-aminobutyric acid type A receptor alpha2 subunit [Source:RGD Symbol%3BAcc:61856]
rn6_v1_chr1_+_81779380_81779482	0.0358663	Pax4	ENSRNOT00000065865|Arhgef1|ENSRNOG00000020130|Rho guanine nucleotide exchange factor 1 [Source:RGD Symbol%3BAcc:620951]	ENSRNOT00000080143|Arhgef1|ENSRNOG00000020130|Rho guanine nucleotide exchange factor 1 [Source:RGD Symbol%3BAcc:620951]	ENSRNOT00000089592|Arhgef1|ENSRNOG00000020130|Rho guanine nucleotide exchange factor 1 [Source:RGD Symbol%3BAcc:620951]	ENSRNOT00000080840|Arhgef1|ENSRNOG00000020130|Rho guanine nucleotide exchange factor 1 [Source:RGD Symbol%3BAcc:620951]
rn6_v1_chr6_-_50941248_50941248	0.0353302	Pax4	ENSRNOT00000084533|Dus4l|ENSRNOG00000008155|dihydrouridine synthase 4-like [Source:RGD Symbol%3BAcc:1311445]
rn6_v1_chr7_+_97559841_97559841	0.0334604	Pax4	ENSRNOT00000007326|Zhx2|ENSRNOG00000005417|zinc fingers and homeoboxes 2 [Source:RGD Symbol%3BAcc:727926]
rn6_v1_chr5_+_6373583_6373583	0.0330452	Pax4	ENSRNOT00000084749|AABR07046778.1|ENSRNOG00000058589|
rn6_v1_chr7_-_140437467_140437467	0.0324975	Pax4	ENSRNOT00000087181|Fkbp11|ENSRNOG00000054775|FK506 binding protein 11 [Source:RGD Symbol%3BAcc:1306161]
rn6_v1_chr8_+_12823155_12823155	0.0319668	Pax4	ENSRNOT00000011008|Sesn3|ENSRNOG00000008173|sestrin 3 [Source:RGD Symbol%3BAcc:1309470]
rn6_v1_chr3_-_51297852_51297852	0.0293965	Pax4	ENSRNOT00000001607|Cobll1|ENSRNOG00000027016|cordon-bleu WH2 repeat protein-like 1 [Source:RGD Symbol%3BAcc:1308954]
rn6_v1_chr7_+_117605050_117605050	0.0293313	Pax4	ENSRNOT00000047380|Slc52a2|ENSRNOG00000032561|solute carrier family 52 member 2 [Source:RGD Symbol%3BAcc:1560410]
rn6_v1_chr7_-_120295618_120295618	0.029233	Pax4	ENSRNOT00000014413|Ankrd54|ENSRNOG00000010821|ankyrin repeat domain 54 [Source:RGD Symbol%3BAcc:1309552]
rn6_v1_chrM_+_9870_9870	0.029018	Pax4	ENSRNOT00000044582|Mt-nd4l|ENSRNOG00000031053|mitochondrially encoded NADH 4L dehydrogenase [Source:RGD Symbol%3BAcc:620494]
rn6_v1_chr14_-_103321270_103321270	0.0281346	Pax4	ENSRNOT00000006157|Meis1|ENSRNOG00000004606|Meis homeobox 1 [Source:RGD Symbol%3BAcc:1585482]
rn6_v1_chr15_-_42947656_42947656	0.0280144	Pax4	ENSRNOT00000030007|Ptk2b|ENSRNOG00000027839|protein tyrosine kinase 2 beta [Source:RGD Symbol%3BAcc:628758]
rn6_v1_chr7_-_117605141_117605141	0.0255165	Pax4	ENSRNOT00000035199|Fbxl6|ENSRNOG00000025497|F-box and leucine-rich repeat protein 6 [Source:RGD Symbol%3BAcc:1359687]
rn6_v1_chr12_-_37411525_37411525	0.025193	Pax4	ENSRNOT00000087698|Tctn2|ENSRNOG00000052704|tectonic family member 2 [Source:RGD Symbol%3BAcc:1591895]
rn6_v1_chr14_+_99919485_99919485	0.0226896	Pax4	ENSRNOT00000006087|Egfr|ENSRNOG00000004332|epidermal growth factor receptor [Source:RGD Symbol%3BAcc:2543]
rn6_v1_chr8_-_53901358_53901358	0.0226338	Pax4	ENSRNOT00000047666|Ncam1|ENSRNOG00000031890|neural cell adhesion molecule 1 [Source:RGD Symbol%3BAcc:67378]	ENSRNOT00000042281|Ncam1|ENSRNOG00000031890|neural cell adhesion molecule 1 [Source:RGD Symbol%3BAcc:67378]
rn6_v1_chr1_+_116604550_116604550	0.0213129	Pax4	ENSRNOT00000083587|Ube3a|ENSRNOG00000015734|ubiquitin protein ligase E3A [Source:RGD Symbol%3BAcc:1306361]
rn6_v1_chr20_-_6257604_6257604	0.0211613	Pax4	ENSRNOT00000092489|Stk38|ENSRNOG00000000519|serine/threonine kinase 38 [Source:RGD Symbol%3BAcc:1309455]
rn6_v1_chr3_-_92749121_92749121	0.0209443	Pax4	ENSRNOT00000008760|Cd44|ENSRNOG00000006094|CD44 molecule (Indian blood group) [Source:RGD Symbol%3BAcc:2307]
rn6_v1_chr20_-_1878126_1878126	0.0207546	Pax4	ENSRNOT00000000995|Ubd|ENSRNOG00000000768|ubiquitin D [Source:RGD Symbol%3BAcc:69418]
rn6_v1_chr12_-_11176106_11176106	0.0205419	Pax4	ENSRNOT00000090073|Zkscan5|ENSRNOG00000059552|zinc finger with KRAB and SCAN domains 5 [Source:RGD Symbol%3BAcc:1311175]
rn6_v1_chr1_-_221370322_221370322	0.0203645	Pax4	ENSRNOT00000028431|Capn1|ENSRNOG00000020935|calpain 1 [Source:RGD Symbol%3BAcc:2267]
rn6_v1_chr12_-_11175917_11175917	0.0201933	Pax4	ENSRNOT00000079573|Zkscan5|ENSRNOG00000059552|zinc finger with KRAB and SCAN domains 5 [Source:RGD Symbol%3BAcc:1311175]
rn6_v1_chr15_+_43298794_43298794	0.0198979	Pax4	ENSRNOT00000012736|Adra1a|ENSRNOG00000009522|adrenoceptor alpha 1A [Source:RGD Symbol%3BAcc:2055]
rn6_v1_chr15_-_6587367_6587367	0.0197621	Pax4	ENSRNOT00000038449|Zfp385d|ENSRNOG00000014661|zinc finger protein 385D [Source:RGD Symbol%3BAcc:1359606]
rn6_v1_chrX_-_116792707_116792707	0.019286	Pax4	ENSRNOT00000049482|Amot|ENSRNOG00000007345|angiomotin [Source:RGD Symbol%3BAcc:1564027]
rn6_v1_chr20_-_4401610_4401610	0.0192608	Pax4	ENSRNOT00000091468|Ppt2|ENSRNOG00000000435|palmitoyl-protein thioesterase 2 [Source:RGD Symbol%3BAcc:620375]
rn6_v1_chr3_+_94530586_94530586	0.0175294	Pax4	ENSRNOT00000067860|Cstf3|ENSRNOG00000012089|cleavage stimulation factor subunit 3 [Source:RGD Symbol%3BAcc:1305901]
rn6_v1_chr7_+_37018459_37018459	0.017323	Pax4	ENSRNOT00000087297|Eea1|ENSRNOG00000021681|early endosome antigen 1 [Source:RGD Symbol%3BAcc:1310167]
rn6_v1_chr7_-_101140308_101140308	0.0170196	Pax4	ENSRNOT00000006279|Fam84b|ENSRNOG00000004744|family with sequence similarity 84%2C member B [Source:MGI Symbol%3BAcc:MGI:3026924]
rn6_v1_chr5_+_148781222_148781222	0.0159754	Pax4	ENSRNOT00000015831|Pum1|ENSRNOG00000011709|pumilio RNA-binding family member 1 [Source:RGD Symbol%3BAcc:1307190]
rn6_v1_chr9_-_10471009_10471009	0.0157685	Pax4	ENSRNOT00000072868|Safb|ENSRNOG00000050543|scaffold attachment factor B [Source:RGD Symbol%3BAcc:620613]
rn6_v1_chr11_-_57993548_57993548	0.014269	Pax4	ENSRNOT00000002957|Nectin3|ENSRNOG00000002176|nectin cell adhesion molecule 3 [Source:RGD Symbol%3BAcc:1309516]
rn6_v1_chr12_-_44999074_44999159	0.0139441	Pax4	ENSRNOT00000079177|Vsig10|ENSRNOG00000022698|V-set and immunoglobulin domain containing 10 [Source:RGD Symbol%3BAcc:1565800]	ENSRNOT00000038293|Vsig10|ENSRNOG00000022698|V-set and immunoglobulin domain containing 10 [Source:RGD Symbol%3BAcc:1565800]
rn6_v1_chr7_-_114573900_114573900	0.0132846	Pax4	ENSRNOT00000011219|Ptk2|ENSRNOG00000007916|protein tyrosine kinase 2 [Source:RGD Symbol%3BAcc:3443]
rn6_v1_chr1_-_248376750_248376750	0.0132159	Pax4	ENSRNOT00000089073|Gldc|ENSRNOG00000011599|glycine decarboxylase [Source:RGD Symbol%3BAcc:1308660]
rn6_v1_chr7_-_119689938_119689938	0.0131794	Pax4	ENSRNOT00000000200|Tmprss6|ENSRNOG00000000184|transmembrane protease%2C serine 6 [Source:RGD Symbol%3BAcc:1307138]
rn6_v1_chr18_-_81682206_81682206	0.0128575	Pax4	ENSRNOT00000058219|LOC100359752|ENSRNOG00000038241|hypothetical protein LOC100359752 [Source:RGD Symbol%3BAcc:2323488]
rn6_v1_chr8_-_67040005_67040005	0.0121484	Pax4	ENSRNOT00000038641|Glce|ENSRNOG00000025372|glucuronic acid epimerase [Source:RGD Symbol%3BAcc:1565253]
rn6_v1_chr1_+_80092403_80092403	0.0116782	Pax4	ENSRNOT00000078336|Eml2|ENSRNOG00000030127|echinoderm microtubule associated protein like 2 [Source:RGD Symbol%3BAcc:621066]
rn6_v1_chr20_-_44255064_44255064	0.0116315	Pax4	ENSRNOT00000000735|Wisp3|ENSRNOG00000000597|WNT1 inducible signaling pathway protein 3 [Source:RGD Symbol%3BAcc:1564120]
rn6_v1_chr20_-_5076539_5076586	0.0114197	Pax4	ENSRNOT00000076253|Ly6g6f|ENSRNOG00000027225|lymphocyte antigen 6 complex%2C locus G6F [Source:RGD Symbol%3BAcc:1303333]	ENSRNOT00000037613|Ly6g6f|ENSRNOG00000027225|lymphocyte antigen 6 complex%2C locus G6F [Source:RGD Symbol%3BAcc:1303333]
rn6_v1_chr6_+_28235695_28235695	0.0106304	Pax4	ENSRNOT00000047210|Dnmt3a|ENSRNOG00000026649|DNA methyltransferase 3 alpha [Source:RGD Symbol%3BAcc:1303336]
rn6_v1_chr13_+_49005405_49005413	0.0101303	Pax4	ENSRNOT00000092560|Lemd1|ENSRNOG00000051244|LEM domain containing 1 [Source:RGD Symbol%3BAcc:2322707]	ENSRNOT00000076457|Lemd1|ENSRNOG00000051244|LEM domain containing 1 [Source:RGD Symbol%3BAcc:2322707]
rn6_v1_chr8_+_107508351_107508351	0.00905355	Pax4	ENSRNOT00000081594|Cep70|ENSRNOG00000022845|centrosomal protein 70 [Source:RGD Symbol%3BAcc:1561486]
rn6_v1_chr4_+_110699557_110699686	0.00767724	Pax4	ENSRNOT00000030588|Lrrtm4|ENSRNOG00000021938|leucine rich repeat transmembrane neuronal 4 [Source:RGD Symbol%3BAcc:1560707]	ENSRNOT00000092261|Lrrtm4|ENSRNOG00000021938|leucine rich repeat transmembrane neuronal 4 [Source:RGD Symbol%3BAcc:1560707]
rn6_v1_chrX_+_105537602_105537602	0.0067724	Pax4	ENSRNOT00000029833|Armcx1|ENSRNOG00000037709|armadillo repeat containing%2C X-linked 1 [Source:RGD Symbol%3BAcc:1561629]
rn6_v1_chr12_+_40244081_40244081	0.00635654	Pax4	ENSRNOT00000030583|Sh2b3|ENSRNOG00000028198|SH2B adaptor protein 3 [Source:RGD Symbol%3BAcc:68411]
rn6_v1_chr4_-_158704170_158704170	0.00632882	Pax4	ENSRNOT00000082009|Ntf3|ENSRNOG00000019716|neurotrophin 3 [Source:RGD Symbol%3BAcc:619728]
rn6_v1_chrM_+_3904_3904	0.00586279	Pax4	ENSRNOT00000040993|Mt-nd2|ENSRNOG00000031033|mitochondrially encoded NADH dehydrogenase 2 [Source:RGD Symbol%3BAcc:620556]
rn6_v1_chr6_-_103313074_103313074	0.00560958	Pax4	ENSRNOT00000083677|Zfp36l1|ENSRNOG00000058646|zinc finger protein 36%2C C3H type-like 1 [Source:RGD Symbol%3BAcc:62009]
rn6_v1_chr18_+_60392376_60392376	0.00472401	Pax4	ENSRNOT00000023890|Nedd4l|ENSRNOG00000017610|neural precursor cell expressed%2C developmentally down-regulated 4-like%2C E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:735047]
rn6_v1_chr13_-_53108713_53108713	0.00426026	Pax4	ENSRNOT00000035404|RGD1311892|ENSRNOG00000025948|similar to hypothetical protein FLJ10901 [Source:RGD Symbol%3BAcc:1311892]
rn6_v1_chr13_+_90301006_90301006	0.00412261	Pax4	ENSRNOT00000029315|Slamf6|ENSRNOG00000038286|SLAM family member 6 [Source:RGD Symbol%3BAcc:1561848]
rn6_v1_chr1_+_273854248_273854342	0.00333247	Pax4	ENSRNOT00000044827|Add3|ENSRNOG00000012820|adducin 3 [Source:RGD Symbol%3BAcc:2043]	ENSRNOT00000017600|Add3|ENSRNOG00000012820|adducin 3 [Source:RGD Symbol%3BAcc:2043]	ENSRNOT00000086496|Add3|ENSRNOG00000012820|adducin 3 [Source:RGD Symbol%3BAcc:2043]
rn6_v1_chr16_-_62164135_62164135	0.00299687	Pax4	ENSRNOT00000058872|Gtf2e2|ENSRNOG00000014422|general transcription factor IIE subunit 2 [Source:RGD Symbol%3BAcc:1310134]
rn6_v1_chr18_+_30527705_30527705	0.00259298	Pax4	ENSRNOT00000027168|Pcdhb14|ENSRNOG00000020059|protocadherin beta 14 [Source:RGD Symbol%3BAcc:1307591]
rn6_v1_chr10_-_25845634_25845634	0.00211845	Pax4	ENSRNOT00000004269|Mat2b|ENSRNOG00000003177|methionine adenosyltransferase 2B [Source:RGD Symbol%3BAcc:1593534]
rn6_v1_chr5_+_117583502_117583502	0.000424376	Pax4	ENSRNOT00000010933|Usp1|ENSRNOG00000007890|ubiquitin specific peptidase 1 [Source:RGD Symbol%3BAcc:1306461]
