rn6_v1_chr13_-_89565813_89565813	0.0704457	Sox1	ENSRNOT00000004347|Pcp4l1|ENSRNOG00000003209|Purkinje cell protein 4-like 1 [Source:RGD Symbol%3BAcc:1593809]
rn6_v1_chr4_-_10517832_10517848	0.0553389	Sox1	ENSRNOT00000039953|Gsap|ENSRNOG00000028801|gamma-secretase activating protein [Source:RGD Symbol%3BAcc:1563271]	ENSRNOT00000083964|Gsap|ENSRNOG00000028801|gamma-secretase activating protein [Source:RGD Symbol%3BAcc:1563271]
rn6_v1_chr16_+_3293599_3293657	0.0408377	Sox1	ENSRNOT00000081999|Erc2|ENSRNOG00000015148|ELKS/RAB6-interacting/CAST family member 2 [Source:RGD Symbol%3BAcc:708372]	ENSRNOT00000047118|Erc2|ENSRNOG00000015148|ELKS/RAB6-interacting/CAST family member 2 [Source:RGD Symbol%3BAcc:708372]	ENSRNOT00000020427|Erc2|ENSRNOG00000015148|ELKS/RAB6-interacting/CAST family member 2 [Source:RGD Symbol%3BAcc:708372]
rn6_v1_chr3_-_177201525_177201525	0.0381336	Sox1	ENSRNOT00000022451|Rgs19|ENSRNOG00000016547|regulator of G-protein signaling 19 [Source:RGD Symbol%3BAcc:629471]
rn6_v1_chr13_+_91054974_91054974	0.0372654	Sox1	ENSRNOT00000091089|Crp|ENSRNOG00000000053|C-reactive protein [Source:RGD Symbol%3BAcc:2411]
rn6_v1_chr19_-_36157924_36157924	0.0344322	Sox1	ENSRNOT00000072022|AABR07043701.1|ENSRNOG00000050237|
rn6_v1_chr9_-_43454078_43454078	0.0316514	Sox1	ENSRNOT00000023550|Tmem131|ENSRNOG00000017265|transmembrane protein 131 [Source:RGD Symbol%3BAcc:1309266]
rn6_v1_chr17_-_22143324_22143324	0.0280112	Sox1	ENSRNOT00000019361|Edn1|ENSRNOG00000014361|endothelin 1 [Source:RGD Symbol%3BAcc:2532]
rn6_v1_chr10_-_90940118_90940118	0.0247024	Sox1	ENSRNOT00000093143|Eftud2|ENSRNOG00000002818|elongation factor Tu GTP binding domain containing 2 [Source:RGD Symbol%3BAcc:1560116]
rn6_v1_chr6_+_144071914_144071914	0.0233035	Sox1	ENSRNOT00000056743|LOC102547216|ENSRNOG00000037486|uncharacterized LOC102547216 [Source:RGD Symbol%3BAcc:7627810]
rn6_v1_chr4_-_65962539_65962539	0.0229079	Sox1	ENSRNOT00000040391|RGD1306271|ENSRNOG00000013729|similar to KIAA1549 protein [Source:RGD Symbol%3BAcc:1306271]
rn6_v1_chr10_-_13826945_13826945	0.0223706	Sox1	ENSRNOT00000012506|E4f1|ENSRNOG00000009224|E4F transcription factor 1 [Source:RGD Symbol%3BAcc:1596731]
rn6_v1_chr19_+_51317425_51317425	0.0214724	Sox1	ENSRNOT00000019298|Cdh13|ENSRNOG00000014371|cadherin 13 [Source:RGD Symbol%3BAcc:619745]
rn6_v1_chr7_+_2529077_2529077	0.0212959	Sox1	ENSRNOT00000079383|Baz2a|ENSRNOG00000053881|bromodomain adjacent to zinc finger domain%2C 2A [Source:RGD Symbol%3BAcc:1305037]
rn6_v1_chr8_+_23771920_23771920	0.0209214	Sox1	ENSRNOT00000020481|Bbs9|ENSRNOG00000015189|Bardet-Biedl syndrome 9 [Source:RGD Symbol%3BAcc:1308472]
rn6_v1_chr20_+_4959294_4959294	0.0207782	Sox1	ENSRNOT00000074223|Hspa1l|ENSRNOG00000047966|heat shock protein family A (Hsp70) member 1 like [Source:RGD Symbol%3BAcc:1595925]
rn6_v1_chr10_+_53740841_53740841	0.0191715	Sox1	ENSRNOT00000004295|Myh2|ENSRNOG00000049695|myosin heavy chain 2 [Source:RGD Symbol%3BAcc:620354]
rn6_v1_chr10_-_36502313_36502313	0.0171839	Sox1	ENSRNOT00000041273|LOC679794|ENSRNOG00000033559|similar to Cytochrome c%2C somatic [Source:RGD Symbol%3BAcc:1584748]
rn6_v1_chrX_+_35869538_35869538	0.0170856	Sox1	ENSRNOT00000058947|Ppef1|ENSRNOG00000027331|protein phosphatase with EF-hand domain 1 [Source:RGD Symbol%3BAcc:1562772]
rn6_v1_chr19_+_14835822_14835822	0.0155467	Sox1	ENSRNOT00000072804|1700007B14Rik|ENSRNOG00000046163|RIKEN cDNA 1700007B14 gene [Source:MGI Symbol%3BAcc:MGI:1919081]
rn6_v1_chr2_+_263895241_263895290	0.0150657	Sox1	ENSRNOT00000014126|Ptger3|ENSRNOG00000010325|prostaglandin E receptor 3 [Source:RGD Symbol%3BAcc:3435]	ENSRNOT00000014034|Ptger3|ENSRNOG00000010325|prostaglandin E receptor 3 [Source:RGD Symbol%3BAcc:3435]
rn6_v1_chr10_+_31324512_31324512	0.0129193	Sox1	ENSRNOT00000008559|Fndc9|ENSRNOG00000006549|fibronectin type III domain containing 9 [Source:RGD Symbol%3BAcc:2318580]
rn6_v1_chr1_-_183630695_183630695	0.0128599	Sox1	ENSRNOT00000036330|AABR07005506.1|ENSRNOG00000025122|
rn6_v1_chr5_-_162602339_162602339	0.0125088	Sox1	ENSRNOT00000071779|RGD1563334|ENSRNOG00000050089|similar to novel protein similar to esterases [Source:RGD Symbol%3BAcc:1563334]
rn6_v1_chr9_+_118842787_118842787	0.0121048	Sox1	ENSRNOT00000090512|Dlgap1|ENSRNOG00000016196|DLG associated protein 1 [Source:RGD Symbol%3BAcc:620223]
rn6_v1_chr10_+_71536533_71536533	0.011699	Sox1	ENSRNOT00000088138|Acaca|ENSRNOG00000034013|acetyl-CoA carboxylase alpha [Source:RGD Symbol%3BAcc:621248]
rn6_v1_chr18_-_62476700_62476700	0.0116377	Sox1	ENSRNOT00000048429|Cycs|ENSRNOG00000032885|cytochrome c%2C somatic [Source:RGD Symbol%3BAcc:2451]
rn6_v1_chr18_-_41899450_41899450	0.0116307	Sox1	ENSRNOT00000057099|RGD1561114|ENSRNOG00000030956|similar to hypothetical protein 4930474N05 [Source:RGD Symbol%3BAcc:1561114]
rn6_v1_chr1_-_2017488_2017488	0.0115538	Sox1	ENSRNOT00000021905|Tab2|ENSRNOG00000016054|TGF-beta activated kinase 1/MAP3K7 binding protein 2 [Source:RGD Symbol%3BAcc:1309527]
rn6_v1_chr18_+_27114822_27114822	0.0106495	Sox1	ENSRNOT00000027418|Srp19|ENSRNOG00000020204|signal recognition particle 19 [Source:RGD Symbol%3BAcc:1308437]
rn6_v1_chr14_-_21615488_21615488	0.0100486	Sox1	ENSRNOT00000002667|Vcsa2|ENSRNOG00000001945|variable coding sequence A2 [Source:RGD Symbol%3BAcc:3954]
rn6_v1_chr10_-_109827143_109827143	0.00874367	Sox1	ENSRNOT00000054948|Myadml2|ENSRNOG00000036681|myeloid-associated differentiation marker-like 2 [Source:RGD Symbol%3BAcc:1311499]
rn6_v1_chr18_-_16497886_16497886	0.00725929	Sox1	ENSRNOT00000021624|Rprd1a|ENSRNOG00000016036|regulation of nuclear pre-mRNA domain containing 1A [Source:RGD Symbol%3BAcc:1307374]
rn6_v1_chr12_+_45319501_45319501	0.00711781	Sox1	ENSRNOT00000090630|RGD1561114|ENSRNOG00000052647|similar to hypothetical protein 4930474N05 [Source:RGD Symbol%3BAcc:1561114]	ENSRNOT00000041732|RGD1561114|ENSRNOG00000052647|similar to hypothetical protein 4930474N05 [Source:RGD Symbol%3BAcc:1561114]
rn6_v1_chr7_+_34744483_34744483	0.00677817	Sox1	ENSRNOT00000007465|Usp44|ENSRNOG00000005637|ubiquitin specific peptidase 44 [Source:RGD Symbol%3BAcc:1308216]
rn6_v1_chr8_+_133210473_133210473	0.00643177	Sox1	ENSRNOT00000082774|Ccr5|ENSRNOG00000049115|chemokine (C-C motif) receptor 5 [Source:RGD Symbol%3BAcc:620596]
rn6_v1_chr3_+_63510293_63510293	0.00619746	Sox1	ENSRNOT00000058093|Dfnb59|ENSRNOG00000038165|deafness%2C autosomal recessive 59 [Source:RGD Symbol%3BAcc:1587131]
rn6_v1_chr3_-_72052990_72053049	0.00534007	Sox1	ENSRNOT00000064009|Ctnnd1|ENSRNOG00000030790|catenin delta 1 [Source:RGD Symbol%3BAcc:1305643]	ENSRNOT00000081400|Ctnnd1|ENSRNOG00000030790|catenin delta 1 [Source:RGD Symbol%3BAcc:1305643]
rn6_v1_chr2_+_118831350_118831350	0.00509553	Sox1	ENSRNOT00000083720|Pik3ca|ENSRNOG00000056371|phosphatidylinositol-4%2C5-bisphosphate 3-kinase%2C catalytic subunit alpha [Source:RGD Symbol%3BAcc:620916]
rn6_v1_chr10_-_59762644_59762644	0.0049457	Sox1	ENSRNOT00000083390|Ctns|ENSRNOG00000028688|cystinosin%2C lysosomal cystine transporter [Source:RGD Symbol%3BAcc:1308466]
rn6_v1_chr14_-_21553949_21553949	0.00371995	Sox1	ENSRNOT00000031642|Smr3b|ENSRNOG00000001942|submaxillary gland androgen regulated protein 3B [Source:RGD Symbol%3BAcc:3953]
rn6_v1_chrX_+_106360393_106360393	0.00361686	Sox1	ENSRNOT00000004260|Gprasp2|ENSRNOG00000037658|G protein-coupled receptor associated sorting protein 2 [Source:RGD Symbol%3BAcc:1561019]
rn6_v1_chr7_-_12569110_12569143	0.00319882	Sox1	ENSRNOT00000093446|Wdr18|ENSRNOG00000012379|WD repeat domain 18 [Source:RGD Symbol%3BAcc:1310646]	ENSRNOT00000016733|Wdr18|ENSRNOG00000012379|WD repeat domain 18 [Source:RGD Symbol%3BAcc:1310646]
rn6_v1_chr1_+_142136452_142136452	0.00289895	Sox1	ENSRNOT00000016445|Hddc3|ENSRNOG00000012236|HD domain containing 3 [Source:RGD Symbol%3BAcc:1311839]
rn6_v1_chr17_-_44841382_44841382	0.00274971	Sox1	ENSRNOT00000080119|Hist1h2ak|ENSRNOG00000052594|histone cluster 1%2C H2ak [Source:RGD Symbol%3BAcc:1589461]
rn6_v1_chr7_+_34402738_34402738	0.00267174	Sox1	ENSRNOT00000030985|Ccdc38|ENSRNOG00000021892|coiled-coil domain containing 38 [Source:RGD Symbol%3BAcc:1564046]
rn6_v1_chr3_+_150188455_150188455	0.002525	Sox1	ENSRNOT00000072917|AABR07054370.1|ENSRNOG00000046585|
rn6_v1_chr8_+_48657795_48657795	0.0024479	Sox1	ENSRNOT00000013134|Dpagt1|ENSRNOG00000009799|dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 [Source:RGD Symbol%3BAcc:735124]
rn6_v1_chr20_+_27129291_27129291	0.00207045	Sox1	ENSRNOT00000031053|AABR07044933.1|ENSRNOG00000026813|
rn6_v1_chr17_-_15030364_15030364	0.00156733	Sox1	ENSRNOT00000044543|Nutm2f|ENSRNOG00000027311|NUT family member 2F [Source:RGD Symbol%3BAcc:1566043]
